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International Journal of Bioinformatics Research and Applications (IJBRA), Volume 3
Volume 3, Number 1, 2007
- Farid Parvini, Cyrus Shahabi:

An algorithmic approach for static and dynamic gesture recognition utilising mechanical and biomechanical characteristics. 4-23 - Michael D. Morse, Jignesh M. Patel, William I. Grosky:

Efficient evaluation of radial queries using the target tree. 24-41 - Lin Cheung, David W. Cheung, Ben Kao, Kevin Y. Yip

, Michael K. Ng
:
On mining micro-array data by Order-Preserving Submatrix. 42-64 - Bill Andreopoulos, Aijun An

, Xiangji Huang
, Xiaogang Wang:
Finding molecular complexes through multiple layer clustering of protein interaction networks. 65-85 - Jianjun Zhou, Jörg Sander

, Guohui Lin:
Efficient composite pattern finding from monad patterns. 86-99 - Xin Zhu

, Daming Wei:
Computer simulation of intracardiac potential with whole-heart model. 100-122
Volume 3, Number 2, 2007
- Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang:

Supervised classification of protein structures based on convex hull representation. 123-144 - My T. Thai, David MacCallum, Ping Deng, Weili Wu:

Decoding algorithms in pooling designs with inhibitors and error-tolerance. 145-152 - Xue-wen Chen, Byron Gerlach, Dechang Chen, Zhenqiu Liu:

Structural Risk Minimisation based gene expression profiling analysis. 153-169 - Tie Wang, Guoliang Xue, Jeffrey W. Touchman:

Modelling gene functional linkages using yeast microarray data. 170-186 - Pradeep S. Nair, Eugene B. John

:
Analysing the performance of personal computers based on Intel microprocessors for sequence aligning bioinformatics applications. 187-205 - Yuhang Wang, Siling Wang:

A novel stationary wavelet denoising algorithm for array-based DNA Copy Number data. 206-222 - Aiguo Du, Xiaohua Hu, Yi Pan:

Prediction of the disulphide bridges in proteins using SVM. 223-233 - Michal Brylinski, Leszek Konieczny, Irena Roterman:

Is the protein folding an aim-oriented process? Human haemoglobin as example. 234-260
Volume 3, Number 3, 2007
- Luciano A. Digiampietri

, José de Jesús Pérez Alcázar, Claudia Bauzer Medeiros
:
An ontology-based framework for bioinformatics workflows. 268-285 - Lavanya Dhanapalan, Jake Yue Chen

:
A case study of integrating protein interaction data using semantic web technology. 286-302 - Katy Wolstencroft

, Pinar Alper, Duncan Hull
, Chris Wroe, Phillip W. Lord, Robert D. Stevens, Carole A. Goble
:
The myGrid ontology: bioinformatics service discovery. 303-325 - Andreas Kupfer, Silke Eckstein, Britta Störmann, Brigitte Mathiak:

A database ontology for signal transduction pathways. 326-340 - Deendayal Dinakarpandian, Tuanjie Tong, Yugyung Lee:

A pragmatic approach to mapping the open biomedical ontologies. 341-365 - Ramez Elmasri, Feng Ji, Jack Fu, Yiming Zhang, Zoe Raja:

Modelling concepts and database implementation techniques for complex biological data. 366-388 - René Witte, Thomas Kappler, Christopher J. O. Baker

:
Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. 389-413 - Illhoi Yoo, Xiaohua Hu, Il-Yeol Song:

Biomedical ontology improves biomedical literature clustering performance: a comparison study. 414-428
Volume 3, Number 4, 2007
- Brian Tripet, Megha Renuka Jayadev, Don Blow, Cao D. Nguyen, Robert S. Hodges, Krzysztof J. Cios:

Proteomic data mining using predicted peptide chromatographic retention times. 431-445 - Raja Loganantharaj, Vivek M. Philip

:
On predicting secondary structure transition. 446-455 - Kimberly K. Baer, David A. McClellan

:
Molecular coevolution of the vertebrate cytochrome c. 456-470 - Mark T. W. Ebbert, Wesley A. Beckstead, Timothy O'Connor, Mark J. Clement, David A. McClellan

:
Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties. 471-479 - Shawn Martin, Zisu Mao, Linda S. Chan, Suraiya Rasheed:

Inferring protein-protein interaction networks from protein complex data. 480-492 - Hyrum Carroll, Perry G. Ridge, Mark J. Clement, Quinn Snell:

Phylogenies scores for exhaustive searches and parsimony scores searches. 493-503 - Srikar Chamala

, Wesley A. Beckstead, Mark J. Rowe, David A. McClellan
:
Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians. 504-522 - Abanish Singh, Cédric Feschotte

, Nikola Stojanovic:
A study of the repetitive structure and distribution of short motifs in human genomic sequences. 523-535 - Yinglei Lai:

Conservative adjustment of permutation p-values when the number of permutations is limited. 536-546

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