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International Journal of High Performance Computing Applications, Volume 34
Volume 34, Number 1, January 2020
- José M. Cecilia:
Guest editors' note: Special issue on novel high-performance computing algorithms and platforms in bioinformatics.
- Javier Prades
, Baldomero Imbernón
, Carlos Reaño
, Jorge Peña-García, José Pedro Cerón-Carrasco
, Federico Silla
, Horacio Pérez Sánchez
:
Maximizing resource usage in multifold molecular dynamics with rCUDA. - Christian Ponte-Fernández
, Jorge González-Domínguez, María J. Martín
:
Fast search of third-order epistatic interactions on CPU and GPU clusters. - Baldomero Imbernón
, Antonio Llanes
, José-Matías Cutillas-Lozano, Domingo Giménez:
HYPERDOCK: Improving virtual screening through parallel hyperheuristics. - Marta Garcia-Gasulla
, Filippo Mantovani
, Marc Josep-Fabrego, Beatriz Eguzkitza, Guillaume Houzeaux:
Runtime mechanisms to survive new HPC architectures: A use case in human respiratory simulations. - César González, Mariano Pérez
, Juan M. Orduña
, Javier Chaves, Ana-Bárbara García:
HPG-HMapper: A DNA hydroxymethylation analysis tool.
- Akrem Benatia
, Weixing Ji
, Yizhuo Wang, Feng Shi:
Sparse matrix partitioning for optimizing SpMV on CPU-GPU heterogeneous platforms. - José Miguel Mantas
, Francesco Vecil:
Hybrid OpenMP-CUDA parallel implementation of a deterministic solver for ultrashort DG-MOSFETs. - Pawel Russek
, Ernest Jamro, Agnieszka Dabrowska-Boruch
, Kazimierz Wiatr:
A study of the loops control for reconfigurable computing with OpenCL in the LABS local search problem. - Daobi Chen, Liang Yuan, Yunquan Zhang, Jingfu Yan, David K. Kahaner:
HPC software capability landscape in China.
Volume 34, Number 2, March 2020
- Jue Wang, Xinfu He:
Special issue on advanced simulation in engineering. - Xinming Qin
, Honghui Shang
, Lei Xu, Wei Hu, Jinlong Yang, Shigang Li, Yunquan Zhang:
The static parallel distribution algorithms for hybrid density-functional calculations in HONPAS package. - Xiaodong Hu, Zhonghua Lu
, Jian Zhang, Xiazhen Liu, Wu Yuan, Shan Liang, Haikuo Zhang:
A parallel algorithm for chimera grid with implicit hole cutting method. - Xianmeng Wang, Zhifeng Zhou, Changjun Hu, Wen Yang, Minfu Zhao, Zhaoshun Wang, Peng Shi:
Accelerating and tuning small matrix multiplications on Sunway TaihuLight: A case study of spectral element CFD Code Nek5000.
- Gary Lawson, Masha Sosonkina, Tal Ezer, Yuzhong Shen:
Applying EMD/HHT analysis to power traces of applications executed on systems with Intel Xeon Phi. - Mario Hernández, Juan M. Cebrian
, José M. Cecilia, José M. García:
Offloading strategies for Stencil kernels on the KNC Xeon Phi architecture: Accuracy versus performance. - Atsushi Hori, Kazumi Yoshinaga, Thomas Hérault
, Aurelien Bouteiller
, George Bosilca, Yutaka Ishikawa:
Overhead of using spare nodes. - Jean Luca Bez
, Andre Ramos Carneiro, Pablo José Pavan, Valéria Soldera Girelli
, Francieli Zanon Boito, Bruno Alves Fagundes, Carla Osthoff
, Pedro Leite da Silva Dias
, Jean-François Méhaut
, Philippe O. A. Navaux:
I/O performance of the Santos Dumont supercomputer. - Louis-Claude Canon, Aurélie Kong Win Chang, Yves Robert
, Frédéric Vivien
:
Scheduling independent stochastic tasks under deadline and budget constraints.
Volume 34, Number 3, May 2020
- Roberto Porcù
, Edie Miglio, Nicola Parolini
, Mattia Penati
, Noemi Vergopolan
:
HPC simulations of brownout: A noninteracting particles dynamic model. - Byron E. Moutafis, George A. Gravvanis
, Christos K. Filelis-Papadopoulos:
Hybrid multi-projection method using sparse approximate inverses on GPU clusters. - Tieqiang Mo, Renfa Li:
Iteratively solving sparse linear system based on PaRSEC task scheduling. - David Zwick
, S. Balachandar
:
A scalable Euler-Lagrange approach for multiphase flow simulation on spectral elements. - Sébastien Cayrols
, Iain S. Duff, Florent Lopez:
Parallelization of the solve phase in a task-based Cholesky solver using a sequential task flow model. - J. C. S. Kadupitiya, Geoffrey C. Fox, Vikram Jadhao
:
Machine learning for parameter auto-tuning in molecular dynamics simulations: Efficient dynamics of ions near polarizable nanoparticles.
Volume 34, Number 4, July 2020
- Kadir Akbudak
, Hatem Ltaief
, Étienne Vincent, Rached Abdelkhalak, Thierry Tonellot, David E. Keyes
:
Asynchronous computations for solving the acoustic wave propagation equation. - Yang Liu
, Wissam M. Sid-Lakhdar, Elizaveta Rebrova
, Pieter Ghysels, Xiaoye Sherry Li:
A parallel hierarchical blocked adaptive cross approximation algorithm. - Tom Peterka
, Deborah Bard, Janine C. Bennett, E. Wes Bethel, Ron A. Oldfield, Line Pouchard
, Christine Sweeney
, Matthew Wolf:
Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources. - Francesco Cremonesi
, Georg Hager
, Gerhard Wellein
, Felix Schürmann:
Analytic performance modeling and analysis of detailed neuron simulations. - Kevin Verma
, Christopher McCabe, Chong Peng, Robert Wille:
A PCISPH implementation using distributed multi-GPU acceleration for simulating industrial engineering applications.
- A. Grannan, Kanika Sood
, Boyana Norris
, Anshu Dubey
:
Understanding the landscape of scientific software used on high-performance computing platforms.
Volume 34, Number 5, September 2020
- Walid Keyrouz, Michael Mascagni:
CRE2019 Special Issue Introduction IJHPCA.
- David H. Bailey
:
Reproducibility and variable precision computing. - Gregory Kiar
, Pablo de Oliveira Castro
, Pierre Rioux, Eric Petit, Shawn T. Brown
, Alan C. Evans
, Tristan Glatard
:
Comparing perturbation models for evaluating stability of neuroimaging pipelines. - Roman Iakymchuk, María Barreda Vayá, Stef Graillat, José Ignacio Aliaga
, Enrique S. Quintana-Ortí:
Reproducibility of parallel preconditioned conjugate gradient in hybrid programming environments. - Brett Neuman
, Andy Dubois, Laura Monroe, Robert W. Robey:
Fast, good, and repeatable: Summations, vectorization, and reproducibility.
- Srdan Nikolic
, Nenad Stevanovic, Milos R. Ivanovic:
Optimizing parallel particle tracking in Brownian motion using machine learning. - Amanda Bienz
, William D. Gropp, Luke N. Olson:
Reducing communication in algebraic multigrid with multi-step node aware communication. - Paul F. Fischer, Misun Min
, Thilina Rathnayake
, Som Dutta, Tzanio V. Kolev, Veselin Dobrev
, Jean-Sylvain Camier
, Martin Kronbichler
, Timothy C. Warburton
, Kasia Swirydowicz, Jed Brown:
Scalability of high-performance PDE solvers.
Volume 34, Number 6, November 2020
- James D. Stevens
, Andreas Klöckner:
A mechanism for balancing accuracy and scope in cross-machine black-box GPU performance modeling. - Masaki Iwasawa
, Daisuke Namekata, Ryo Sakamoto, Takashi Nakamura, Yasuyuki Kimura, Keigo Nitadori, Long Wang, Miyuki Tsubouchi, Jun Makino, Zhao Liu, Haohuan Fu, Guangwen Yang:
Implementation and performance of Barnes-hut n-body algorithm on extreme-scale heterogeneous many-core architectures. - Tianjiao Sun
, Lawrence Mitchell, Kaushik Kulkarni, Andreas Klöckner, David A. Ham, Paul H. J. Kelly
:
A study of vectorization for matrix-free finite element methods. - Mohammed A. Al Farhan
, Ahmad Abdelfattah, Stanimire Tomov
, Mark Gates
, Dalal Sukkari
, Azzam Haidar, Robert Rosenberg, Jack J. Dongarra:
MAGMA templates for scalable linear algebra on emerging architectures. - Cristian Ramon-Cortes
, Ramon Amela, Jorge Ejarque
, Philippe Clauss
, Rosa M. Badia
:
AutoParallel: Automatic parallelisation and distributed execution of affine loop nests in Python.
- Hank Childs, Sean Ahern, James P. Ahrens, Andrew C. Bauer, Janine Bennett, E. Wes Bethel, Peer-Timo Bremer, Eric Brugger, Joseph Cottam, Matthieu Dorier, Soumya Dutta
, Jean M. Favre, Thomas Fogal, Steffen Frey
, Christoph Garth, Berk Geveci, William F. Godoy
, Charles D. Hansen, Cyrus Harrison, Bernd Hentschel, Joseph A. Insley, Christopher R. Johnson, Scott Klasky, Aaron Knoll, James Kress, Matthew Larsen, Jay F. Lofstead, Kwan-Liu Ma, Preeti Malakar, Jeremy S. Meredith
, Kenneth Moreland, Paul A. Navrátil, Patrick O'Leary, Manish Parashar, Valerio Pascucci, John Patchett, Tom Peterka, Steve Petruzza, Norbert Podhorszki, David Pugmire, Michel E. Rasquin
, Silvio Rizzi, David H. Rogers, Sudhanshu Sane
, Franz Sauer, Robert Sisneros, Han-Wei Shen, Will Usher, Rhonda Vickery, Venkatram Vishwanath, Ingo Wald, Ruonan Wang, Gunther H. Weber
, Brad Whitlock, Matthew Wolf, Hongfeng Yu, Sean B. Ziegeler:
A terminology for in situ visualization and analysis systems.
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