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ORCIDIn Silico Biology, Volume 11
Volume 11, Numbers 1-2, 2012
- Xiaosheng Wang
:
Identification of Common Tumor Signatures Based on Gene Set Enrichment Analysis. 1-10 - Dikla Dotan-Cohen, Dana Moonshine, Moshe Natan, Yonat Shemer-Avni, Avraham A. Melkman:
GO for Integration of Expression Data. 11-17 - Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay:
Gene Expression Data Analysis Using Multiobjective Clustering Improved with SVM Based Ensemble. 19-27 - Neni Frimayanti, Sharifuddin Mohd. Zain, Vannajan Sanghiran Lee, Habibah A. Wahab, Rohana Yusof, Noorsaadah Abdul Rahman:
Fragment-Based Molecular Design of New Competitive Dengue Den2 Ns2b/Ns3 Inhibitors from the Components of Fingerroot (Boesenbergia rotunda). 29-37 - Rajarshi Guha, Gary Wiggins, David J. Wild, Mu-Hyun Baik, Marlon E. Pierce, Geoffrey Charles Fox:
Improving Usability and Accessibility of Cheminformatics Tools for Chemists through Cyberinfrastructure and Education. 41-60 - Jacqueline M. Hughes-Oliver, Atina D. Brooks, William J. Welch, Morteza G. Khaledi, Douglas M. Hawkins, S. Stanley Young, Kirtesh Patil, Gary W. Howell, Raymond T. Ng, Moody T. Chu:
ChemModLab: A Web-Based Cheminformatics Modeling Laboratory. 61-81 - Alberto Gobbi, Matthew A. Lardy, Sun-Hee Kim, Frank Ruebsam, Martin Tran, Stephen E. Webber, Alan X. Xiang:
Illuminator: Increasing Synergies Between Medicinal And Computational Chemists. 83-93
Volume 11, Numbers 3-4, 2012
- J. Ernst van den Ende:
Obituary. 95 - Y. Y. Vaskin, I. V. Khomicheva, Elena V. Ignatieva, Evgenii E. Vityaev:
ExpertDiscovery and UGENE integrated system for intelligent analysis of regulatory regions of genes. 97-108 - Konstantin V. Gunbin, Valentin V. Suslov, Mikhail A. Genaev, Dmitry A. Afonnikov:
Computer System for Analysis of Molecular Evolution Modes (SAMEM): Analysis of molecular evolution modes at deep inner branches of the phylogenetic tree. 109-123 - Sergey A. Lashin, Yuri G. Matushkin:
Haploid evolutionary constructor: New features and further challenges. 125-135 - Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson, Alexander Dibert:
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment. 137-147 - Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. 149-161
Volume 11, Numbers 5-6, 2012
- Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili:
Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection. 163-173 - David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov:
Coordinated evolution of the Hepatitis B Virus Polymerase. 175-182 - Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov:
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. 183-192 - Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail:
QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. 193-201 - James Lara, Yuri Khudyakov:
Association of antigenic properties to structure of the hepatitis C virus NS3 protein. 203-212 - James Lara, John E. Tavis, Maureen J. Donlin, William M. Lee, He-Jun Yuan, Brian L. Pearlman, Gilberto Vaughan, Joseph C. Forbi, Guo-liang Xia, Yuri Khudyakov:
Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon. 213-224 - Li-Ping Long, Changhe Yuan, Zhipeng Cai, Huiping Xu, Xiu-Feng Wan:
Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. 225-236 - Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alex Zelikovsky:
Reconstructing viral quasispecies from NGS amplicon reads. 237-249 - Serghei Mangul, Adrian Caciula, Olga Glebova, Ion I. Mandoiu, Alex Zelikovsky:
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. 251-261 - Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov:
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response. 263-269 - Mohd Danishuddin, Asad U. Khan:
Molecular modeling and docking analysis of Beta-lactamases with inhibitors: A comparative study. 273-280 - Saranya Devaraj, Jeyakumar Natarajan:
miRNA-mRNA network detects hub mRNAs and cancer specific miRNAs in lung cancer. 281-295
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