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Journal of Integrative Bioinformatics, Volume 14
Volume 14, Number 1, March 2017
- Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer:
Computational miRNomics - Integrative Approaches. - Keywan Hassani-Pak
, Christopher J. Rawlings:
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. - Hamid Hamzeiy
, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
:
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. - Ali M. Yazbeck, Kifah R. Tout, Peter F. Stadler
, Jana Hertel
:
Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution. - Anindya Bhattacharya, Yan Cui:
Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences. - Kavita Goswami
, Anita Tripathi, Neeti Sanan-Mishra
:
Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice.
Volume 14, Number 2, June 2017
- Eudes Barbosa, Richard Röttger
, Anne-Christin Hauschild
, Siomar de Castro Soares
, Sebastian Böcker
, Vasco Ariston de Carvalho Azevedo
, Jan Baumbach
:
LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. - Qihua Tan
, Mads Thomassen, Mark Burton
, Kristian Fredløv Mose, Klaus Ejner Andersen, Jacob v. B. Hjelmborg
, Torben Arvid Kruse:
Generalized Correlation Coefficient for Non-Parametric Analysis of Microarray Time-Course Data. - Dan Søndergaard, Svend V. Nielsen, Christian N. S. Pedersen, Søren Besenbacher
:
Prediction of Primary Tumors in Cancers of Unknown Primary. - Simon J. Larsen
, Jan Baumbach
:
CytoMCS: A Multiple Maximum Common Subgraph Detection Tool for Cytoscape. - Jennifer Maier
, Marianne S. Black, Serena Bonaretti
, Bastian Bier, Bjoern M. Eskofier
, Jang Hwan Choi
, Marc E. Levenston
, Garry Gold
, Rebecca Fahrig, Andreas K. Maier:
Comparison of Different Approaches for Measuring Tibial Cartilage Thickness. - Markus List
:
Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform. - Sepideh Sadegh, Maryam Nazarieh
, Christian Spaniol, Volkhard Helms
:
Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene Regulatory Networks. - Noël Malod-Dognin
, Natasa Przulj
:
Omics Data Complementarity Underlines Functional Cross-Communication in Yeast. - Nora K. Speicher, Nico Pfeifer:
Towards Multiple Kernel Principal Component Analysis for Integrative Analysis of Tumor Samples. - Maximilian Miller
, Chengsheng Zhu, Yana Bromberg
:
clubber: removing the bioinformatics bottleneck in big data analyses. - Muserref Duygu Saçar Demirci
, Jens Allmer
:
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection.
Volume 14, Number 3, September 2017
- Ming Chen
, Andrew P. Harrison, Hugh P. Shanahan
, Yuriy L. Orlov
:
Biological Big Bytes: Integrative Analysis of Large Biological Datasets. - Graeme Benstead-Hume
, Sarah K. Wooller, Frances M. G. Pearl
:
Computational Approaches to Identify Genetic Interactions for Cancer Therapeutics. - Jamie J. Alnasir
, Hugh P. Shanahan
:
A Novel Method to Detect Bias in Short Read NGS Data. - Ruiquan Ge
, Guoqin Mai, Ruochi Zhang, Xundong Wu, Qing Wu, Fengfeng Zhou
:
MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). - Vladimir N. Babenko
, Natalya V. Gubanova
, Anatoly O. Bragin, Irina V. Chadaeva
, Gennady V. Vasiliev, Irina V. Medvedeva
, Alexey S. Gaytan
, Alexey L. Krivoshapkin, Yuriy L. Orlov
:
Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events. - Vladimir N. Babenko
, Dmitry A. Smagin
, Natalia N. Kudryavtseva:
RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE Functional Network. - Lijun Wang, Md. Asif Ahsan, Ming Chen
:
A Generalized Approach for Measuring Relationships Among Genes. - Md. Matiur Rahaman
, Md. Asif Ahsan, Zeeshan Gillani, Ming Chen
:
Digital Biomass Accumulation Using High-Throughput Plant Phenotype Data Analysis.
Volume 14, Number 4, December 2017
- Florentino Fdez-Riverola
, Miguel Rocha
:
Selected Extended Papers of the 11th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB). - Rui Antunes, Sérgio Matos
:
Supervised Learning and Knowledge-Based Approaches Applied to Biomedical Word Sense Disambiguation. - Sérgio Matos
, Rui Antunes:
Protein-Protein Interaction Article Classification Using a Convolutional Recurrent Neural Network with Pre-trained Word Embeddings. - João D. Ferreira
, Bruno Inácio, Reza M. Salek
, Francisco M. Couto:
Assessing Public Metabolomics Metadata, Towards Improving Quality. - Sara Cardoso
, Marcelo Maraschin, Luiz Augusto Martins Peruch, Miguel Rocha
, Aline Pereira:
A Chemometrics Approach for Nuclear Magnetic Resonance Data to Characterize the Partial Metabolome Banana Peels from Southern Brazil. - Telma Afonso, Rodolfo Moresco
, Virgílio G. Uarrota
, Bruno Bachiega Navarro
, Eduardo da C. Nunes, Marcelo Maraschin, Miguel Rocha
:
UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents. - Gökhan Karakülah
:
Discovery and Annotation of Plant Endogenous Target Mimicry Sequences from Public Transcriptome Libraries: A Case Study of Prunus persica. - Shyamasree Ghosh
:
Application of Computational Methods in Planaria Research: A Current Update.

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