Journal of Computational Science, Volume 5

Volume 5, Number 1, January 2014

• 
  Michael Lülfesmann, Ken-ichi Kawarabayashi:
  Sub-exponential graph coloring algorithm for stencil-based Jacobian computations. 1-11
• 
  Rommel G. Regis:
  Particle swarm with radial basis function surrogates for expensive black-box optimization. 12-23
• 
  Gadi Oxman, Shlomo Weiss, Yair Be'ery:
  Computational methods for Conway's Game of Life cellular automaton. 24-31
• 
  Guang-qiu Huang:
  SIS epidemic model-based optimization. 32-50
• 
  Stefan J. Zasada, David Chan-Wei Chang, Ali Nasrat Haidar, Peter V. Coveney:
  Flexible composition and execution of large scale applications on distributed e-infrastructures. 51-62

Volume 5, Number 2, March 2014

Section 1: Empowering Science through Computing: International Conference on Computational Science 2012

• 
  Hesham H. Ali, Yong Shi, Deepak Khazanchi:
  Special Issue on ICCS 2012. 63-64
• 
  I. Gómez-Revuelto, L. E. García-Castillo, S. Llorente-Romano, David Pardo:
  3D hp-adaptive finite element simulations of bend, step, and magic-T electromagnetic waveguide structures. 65-75
• 
  Vishwas Rao, Adrian Sandu:
  An adjoint-based scalable algorithm for time-parallel integration. 76-84
• 
  Rick Archibald, M. Chakoumakos, Tony Zhuang:
  Characterizing the elements of Earth's radiative budget: Applying uncertainty quantification to the CESM. 85-89
• 
  Milosz Ciznicki, Michal Kierzynka, Piotr Kopta, Krzysztof Kurowski, Pawel Gepner:
  Benchmarking JPEG 2000 implementations on modern CPU and GPU architectures. 90-98
• 
  Xiaoqian Zhu, Fei Wang, Haiyan Wang, Changzhi Liang, Run Tang, Xiaolei Sun, Jianping Li:
  TOPSIS method for quality credit evaluation: A case of air-conditioning market in China. 99-105
• 
  Alberto Nuñez, Mercedes G. Merayo:
  A formal framework to analyze cost and performance in Map-Reduce based applications. 106-118
• 
  Xin-She Yang, Mehmet Karamanoglu, Tao Luan, Slawomir Koziel:
  Mathematical modelling and parameter optimization of pulsating heat pipes. 119-125
• 
  Minh Ngoc Dinh, David Abramson, Chao Jin:
  Statistical assertion: A more powerful method for debugging scientific applications. 126-134

Section 2: Special Issue on Bio-Inspired Computing: Theories and Applications

• 
  Jagdish Chand Bansal, Pramod Kumar Singh, Kusum Deep, Atulya Nagar, Millie Pant:
  Special Issue on Bio-Inspired Computing: Theories and Applications: Journal of Computational Science. 135-136
• 
  Ravie Chandren Muniyandi, Abdullah Mohd Zin:
  Modeling framework for membrane computing in biological systems: Evaluation with a case study. 137-143
• 
  Vijay Kumar, Jitender Kumar Chhabra, Dinesh Kumar:
  Parameter adaptive harmony search algorithm for unimodal and multimodal optimization problems. 144-155
• 
  Kusum Kumari Bharti, Pramod Kumar Singh:
  A three-stage unsupervised dimension reduction method for text clustering. 156-169
• 
  Chih-Hao Lin, Pei-Ling Lin:
  Improving the non-dominated sorting genetic algorithm using a gene-therapy method for multi-objective optimization. 170-183
• 
  Subhash Chandra Pandey, Gora Chand Nandi:
  TSD based framework for mining the induction rules. 184-195
• 
  Zuriani Mustaffa, Yuhanis Yusof, Siti Sakira Kamaruddin:
  Enhanced artificial bee colony for training least squares support vector machines in commodity price forecasting. 196-205
• 
  Ahmad Mozaffari, Mohammadreza Azimi, Mofid Gorji-Bandpy:
  Ensemble mutable smart bee algorithm and a robust neural identifier for optimal design of a large scale power system. 206-223
• 
  Amir Hossein Gandomi, Xin-She Yang:
  Chaotic bat algorithm. 224-232
• 
  P. C. Jha, Vikram Bali, Sonam Narula, Mala Kalra:
  Optimal component selection based on cohesion & coupling for component based software system under build-or-buy scheme. 233-242
• 
  K. G. Subramanian, Pradeep Isawasan, Ibrahim Venkat, Linqiang Pan, Atulya Nagar:
  Array P systems with permitting features. 243-250
• 
  Mohamad Amin Bakhshali, Mousa Shamsi:
  Segmentation of color lip images by optimal thresholding using bacterial foraging optimization (BFO). 251-257
• 
  Anupam Yadav, Kusum Deep:
  An efficient co-swarm particle swarm optimization for non-linear constrained optimization. 258-268
• 
  Manohar Singh, Bijaya K. Panigrahi, Abhijit R. Abhyankar, Swagatam Das:
  Optimal coordination of directional over-current relays using informative differential evolution algorithm. 269-276
• 
  P. Victer Paul, A. Ramalingam, Ramachandran Baskaran, P. Dhavachelvan, K. Vivekanandan, R. Subramanian:
  A new population seeding technique for permutation-coded Genetic Algorithm: Service transfer approach. 277-297
• 
  Manoj Thakur:
  A new genetic algorithm for global optimization of multimodal continuous functions. 298-311
• 
  Harish Sharma, Jagdish Chand Bansal, K. V. Arya:
  Self Balanced Differential Evolution. 312-323

Volume 5, Number 3, May 2014

Section 1: Current Bioinformatics

• 
  Vesselin Baev, Gaurav Sablok, Ivan Nikiforov Minkov:
  Next generation sequencing crowd sourcing at BIOCOMP: What promises it holds for us in future? 325-326
• 
  Sasitorn Plakunmonthon, Nattanan Panjaworayan T.-Thienprasert, Kritsada Khongnomnan, Yong Poovorawan, Sunchai Payungporn:
  Computational prediction of hybridization patterns between hepatitis C viral genome and human microRNAs. 327-331
• 
  Gianfranco Politano, Alessandro Savino, Alfredo Benso, Stefano Di Carlo, Hafeez Ur Rehman, Alessandro Vasciaveo:
  Using Boolean networks to model post-transcriptional regulation in gene regulatory networks. 332-344
• 
  Sorana D. Bolboaca, Lorentz Jäntschi:
  Sensitivity, specificity, and accuracy of predictive models on phenols toxicity. 345-350
• 
  Natalia V. Mitiushkina, Aglaya G. Iyevleva, Ekatherina Sh. Kuligina, Alexandr V. Togo, Yoshio Miki, Evgeny N. Imyanitov:
  Biased detection of guanine-rich microRNAs by array profiling: Systematic error or biological phenomenon? 351-356
• 
  Milko Krachunov, Dimitar Vassilev:
  An approach to a metagenomic data processing workflow. 357-362
• 
  Lorentz Jäntschi, Sorana D. Bolboaca:
  Rarefaction on natural compound extracts diversity among genus. 363-367
• 
  Veselka Boeva:
  Clustering approaches for dealing with multiple DNA microarray datasets. 368-376

Section 2: Modeling, Algorithms and Simulations: advances and novel researches for problem-solving and decision-making in complex, multi-scale and multi-domain systems

• 
  Agostino G. Bruzzone:
  Special Issue: Multidisciplinary M&S. 377-379
• 
  Boris V. Sokolov, Vyacheslav A. Zelentsov, Rafael M. Yusupov, Yuri Merkuryev:
  Multiple models of information fusion processes: Quality definition and estimation. 380-386
• 
  Juan Ignacio Latorre Biel, Emilio Jiménez Macías, Mercedes Pérez de la Parte:
  Sequence of decisions on discrete event systems modeled by Petri nets with structural alternative configurations. 387-394
• 
  Marina Massei, Simonluca Poggi, Matteo Agresta, Angelo Ferrando:
  Development planning based on interoperable agent driven simulation. 395-407
• 
  Lena Rogovchenko-Buffoni, Andrea Tundis, Muhammed Zoheb Hossain, Mattias Nyberg, Peter Fritzson:
  An integrated toolchain for model based functional safety analysis. 408-414
• 
  Loucas S. Louca:
  Modal analysis reduction of multi-body systems with generic damping. 415-426
• 
  Irene Hafner, Matthias Rößler, Bernhard Heinzl, Andreas Körner, Michael Landsiedl, Felix Breitenecker:
  Investigating communication and step-size behaviour for co-simulation of hybrid physical systems. 427-438
• 
  Alfredo Garro, Johannes Groß, Marius Riestenpatt gen. Richter, Andrea Tundis:
  Reliability analysis of an Attitude Determination and Control System (ADCS) through the RAMSAS method. 439-449
• 
  Matías A. Nacusse, Sergio J. Junco:
  Switchable structured bond: A bond graph device for modeling power coupling/decoupling of physical systems. 450-462
• 
  Til Hennies, Tobias Reggelin, Juri Tolujew, Pierre-Alain Piccut:
  Mesoscopic supply chain simulation. 463-470
• 
  Elaine M. Raybourn:
  A new paradigm for serious games: Transmedia learning for more effective training and education. 471-481
• 
  J. L. Baliño:
  Modeling and simulation of severe slugging in air-water systems including inertial effects. 482-495

Section 3: High Performance Computing -- SHARCNET

• 
  Ilias S. Kotsireas, Lilia Krivodonova, Sabine McConnell, Erik Schnetter:
  High performance computing theory and applications - Proceedings of SHARCNET Research Day 2012 (Guelph, Ontario). 497-498
• 
  Alexei M. Frolov, David M. Wardlaw:
  Vacuum polarization in light two-electron atoms and ions. 499-506
• 
  Kevin R. Green, Lennaert van Veen:
  Open-source tools for dynamical analysis of Liley's mean-field cortex model. 507-516
• 
  Dhanaraja Kasinathan, Kirsten Morris, Steven D. Yang:
  Solution of large generalized H_∞ algebraic Riccati equations. 517-526
• 
  Varvara Nika, Paul S. Babyn, Hongmei Zhu:
  EigenBlock algorithm for change detection - An application of adaptive dictionary learning techniques. 527-535
• 
  Edward R. Sykes, Wesley Skoczen:
  An improved parallel implementation of RainbowCrack using MPI. 536-541
• 
  Wai Kong Yuen, Egor Ospadov, Stuart M. Rothstein:
  Ground-state electronic properties of LiH calculated from the "Bounce" version of quantum Monte Carlo. 542-548
• 
  Tatiana Zaraiskaya, Sergei Vassiliev, Doug Bruce:
  Discovering oxygen channel topology in photosystem II using implicit ligand sampling and wavefront propagation. 549-555

Volume 5, Number 4, July 2014

Section 1: VCCC-2013

• 
  Ponnadurai Ramasami:
  Preface for the Special Issue of the Journal of Computational Science (Proceedings of the Virtual Conference on Computational Chemistry, VCCC-2013). 557
• 
  Rita Kakkar, Richa Arora, Pragya Gahlot, Deepti Gupta:
  An insight into pyruvate dehydrogenase kinase (PDHK) inhibition through pharmacophore modeling and QSAR studies. 558-567
• 
  Mansour H. Almatarneh, Mohammednoor Altarawneh, Raymond A. Poirier, Ibrahim A. Saraireh:
  High level ab initio, DFT, and RRKM calculations for the unimolecular decomposition reaction of ethylamine. 568-575
• 
  Ning Shen, Ye Fan, Sudhakar Pamidighantam:
  E-science infrastructures for molecular modeling and parametrization. 576-589
• 
  Jane S. Murray, Laura Macaveiu, Peter Politzer:
  Factors affecting the strengths of σ-hole electrostatic potentials. 590-596
• 
  Lorentz Jäntschi, Sorana D. Bolboaca:
  First order derivatives of thermodynamic functions under assumption of no chemical changes revisited. 597-602

Section 2: PEDISWESA'13

• 
  Narayan C. Debnath, Hacène Fouchal:
  Preface - PEDISWESA'13. 603-605
• 
  Takaaki Goto, Tadaaki Kirishima, Tetsuro Nishino, Takeo Yaku, Kensei Tsuchida:
  Generation of UML package diagrams based on an attribute graph grammar. 606-615
• 
  Sebastien Linck, Emmanuel Mory, Julien Bourgeois, Eugen Dedu, François Spies:
  Adaptive multimedia streaming using a simulation test bed. 616-623
• 
  Nathalie Dessart, Philippe Hunel:
  Data collection using WSN for counting individuals and habitat characterization. 624-632
• 
  Nawel Gharbi, Besma Nemmouchi, Lynda Mokdad, Jalel Ben-Othman:
  The impact of breakdowns disciplines and repeated attempts on performances of Small Cell Networks. 633-644
• 
  Sindoora Koneru, Bidyut Gupta, Shahram Rahimi, Ziping Liu, Narayan C. Debnath:
  A highly efficient RPF-based broadcast protocol using a new two-level pruning mechanism. 645-652
• 
  Ramzi A. Haraty, Mirna Naous, Azzam Mourad:
  Assuring consistency in mixed models. 653-663
• 
  Bandar Alghamdi, Hacène Fouchal:
  A mobile wireless body area network platform. 664-674
• 
  Soumya Sen, Santanu Roy, Anirban Sarkar, Nabendu Chaki, Narayan C. Debnath:
  Dynamic discovery of query path on the lattice of cuboids using hierarchical data granularity and storage hierarchy. 675-683

Volume 5, Number 5, September 2014

Section 1: Regular Papers

• 
  Youxiang Xie, Zhaohui Yuan, Linjun Wang:
  Dynamic analysis of pest control model with population dispersal in two patches and impulsive effect. 685-695
• 
  Cheng Guan Koay:
  Distributing points uniformly on the unit sphere under a mirror reflection symmetry constraint. 696-700
• 
  Diogo Fernando Trevisan, João Paulo Gois, Harlen Costa Batagelo:
  A low-cost-memory CUDA implementation of the conjugate gradient method applied to globally supported radial basis functions implicits. 701-708
• 
  Abdolrahman Dadvand, Masoud Baghalnezhad, Iraj Mirzaee, Boo Cheong Khoo, Soheila Ghoreishi:
  An immersed boundary-lattice Boltzmann approach to study the dynamics of elastic membranes in viscous shear flows. 709-718
• 
  Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Krzysztof Kurowski, Mohamed Ben Belgacem, Bastien Chopard, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra:
  Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. 719-731
• 
  Markus Stürmer, Johannes Dagner, Paul Manstetten, Harald Köstler:
  Real-time simulation of temperature in hot rolling rolls. 732-742
• 
  Nada Kherici, Yamina Mohamed Ben Ali:
  Using PSO for a walk of a biped robot. 743-749
• 
  Catherine A. Bliss, Morgan R. Frank, Christopher M. Danforth, Peter Sheridan Dodds:
  An evolutionary algorithm approach to link prediction in dynamic social networks. 750-764
• 
  Seshasai Srinivasan, M. Ziad Saghir:
  Computational evaluation of micro-scale and macro-scale error sources in a thermodiffusive cell. 765-776
• 
  Javad Behnamian:
  A parallel competitive colonial algorithm for JIT flowshop scheduling. 777-783
• 
  Manuel Hasert, Kannan Masilamani, Simon Zimny, Harald Klimach, Jiaxing Qi, Jörg Bernsdorf, Sabine Roller:
  Complex fluid simulations with the parallel tree-based Lattice Boltzmann solver Musubi. 784-794
• 
  Wei Pang, George Macleod Coghill:
  QML-Morven: A novel framework for learning qualitative differential equation models using both symbolic and evolutionary approaches. 795-808
• 
  Asaju La'aro Bolaji, Ahamad Tajudin Khader, Mohammed Azmi Al-Betar, Mohammed A. Awadallah:
  University course timetabling using hybridized artificial bee colony with hill climbing optimizer. 809-818

Section 2: Complex Collective Systems

• 
  Pawel Topa, Jaroslaw Was:
  Complex collective systems. 819-820
• 
  Petros Saravakos, Georgios Ch. Sirakoulis:
  Modeling employees behavior in workplace dynamics. 821-833
• 
  Marija Bezbradica, Heather J. Ruskin, Martin Crane:
  Comparative analysis of asynchronous cellular automata in stochastic pharmaceutical modelling. 834-840
• 
  Felix Dietrich, Gerta Köster, Michael J. Seitz, Isabella von Sivers:
  Bridging the gap: From cellular automata to differential equation models for pedestrian dynamics. 841-846
• 
  Ekaterina Kirik, Andrey Malyshev:
  On validation of SigmaEva pedestrian evacuation computer simulation module with bottleneck flow. 847-850

Volume 5, Number 6, November 2014

Section 1 : Regular Papers

• 
  Muhamad Azfar Ramli, Christopher Pineda Monterola:
  Probing and shaping the information transfer of noise-perturbed complex networks via Markov Chain analysis. 851-860
• 
  Ali Maroosi, Ravie Chandren Muniyandi:
  Enhancement of membrane computing model implementation on GPU by introducing matrix representation for balancing occupancy and reducing inter-block communications. 861-871

Section 2 : Advances in Simulation Part I

• 
  Samee ur Rehman, Matthijs Langelaar, Fred van Keulen:
  Efficient Kriging-based robust optimization of unconstrained problems. 872-881
• 
  Michael Van Schyndel, Gabriel A. Wainer, Rhys Goldstein, Jeremy P. M. Mogk, Azam Khan:
  On the definition of a computational fluid dynamic solver using cellular discrete-event simulation. 882-890
• 
  Tanja Clees, Nils Hornung, Igor N. Nikitin, Lialia Nikitina, Daniela Steffes-lai, Stanislav V. Klimenko:
  Focused ultrasonic therapy planning: Metamodeling, optimization, visualization. 891-897