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ORCIDJournal of Open Source Software, Volume 10
Volume 10, Number 105, January 2025
- Geert Raaijmakers
, Nathan Rutherford, Patrick Timmerman, Tuomo E. Salmi, Anna L. Watts, Chanda Prescod-Weinstein, Isak Svensson, Melissa Mendes:
NEoST: A Python package for nested sampling of the neutron star equation of state. 6003 - Hajime Senuma:
mmh3: A Python extension for MurmurHash3. 6124 - Flaminia Catalli, Matteo Spada:
ProMCDA: A Python package for Probabilistic Multi-Criteria Decision Analysis. 6190 - Theresa Klütz, Kevin Knosala, Johannes Behrens, Rachel Maier, Maximilian Hoffmann, Noah Pflugradt, Detlef Stolten:
ETHOS.FINE: A Framework for Integrated Energy System Assessment. 6274 - Stijn Wittouck, Tim Van Rillaer, Wenke Smets, Sarah Lebeer:
Tidytacos: An R package for analyses on taxonomic composition of microbial communities. 6313 - Anna Tartaglia, Kazunori Akiyama, Paul Tiede:
ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language. 6354 - David Tschumperlé, Sébastien Fourey, Garry Osgood:
G'MIC: An Open-Source Self-Extending Framework for Image Processing. 6618 - Sara Ha, Simona Onori:
COBRAPRO: A MATLAB toolbox for Physics-based Battery Modeling and Co-simulation Parameter Optimization. 6803 - Daniel J. Asay, Timothy M. O'Keefe, Randy L. Buckner, Ross W. Mair:
DWIQC: A Python package for preprocessing and quality assurance of diffusion weighted images. 6974 - Wesley H. Holliday, Eric Pacuit:
pref_voting: The Preferential Voting Tools package for Python. 7020 - Sinan Ozaydin, Lu Li, Utpal Singh, Patrice Rey, Maria Constanza Manassero:
pide: Petrophysical Interpretation tools for geoDynamic Exploration. 7021 - Niklas S. Neher, Erik Faulhaber, Sven Berger, Gregor J. Gassner, Michael Schlottke-Lakemper:
TrixiParticles.jl: Particle-based multiphysics simulation in Julia. 7044 - Raoul Schram, Samuel Spithorst, Erik-Jan van Kesteren:
Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees. 7099 - Robert M. Cook, Md. Asaduzzaman, Sarahjane Jones:
Deident: An R package for data anonymization. 7157 - Daniel Otto de Mentock, Sharan Roongta, Franz Roters, Philip Eisenlohr, Martin Diehl:
A Python Library for Pre- and Post-Processing of DAMASK Simulations. 7164 - John M. Volk, Christian Dunkerly, Christopher Pearson, Charles G. Morton, Justin L. Huntington:
gridwxcomp: A Python package to evaluate and interpolate biases between station and gridded weather data. 7178 - Hause Lin, Tawab Safi:
ollamar: An R package for running large language models. 7211 - Jacob Tiegs, Julia Raykin, Ilia Rochlin:
BART-Survival: A Bayesian machine learning approach to survival analyses in Python. 7213 - Cedric Kulbach, Lucas Cazzonelli, Hoang-Anh Ngo, Max Halford, Saulo Martiello Mastelini:
DeepRiver: A Deep Learning Library for Data Streams. 7226 - Sajjad Khan, Sandeep Pallikkuth, David J. Schodt, Marjolein B. m. Meddens, Hanieh Mazloom-Farsibaf, Michael J. Wester, Sheng Liu, Ellyse Taylor, Mohamadreza Fazel, Farzin Farzam, Keith A. Lidke:
A MATLAB-based Instrument Control (MIC) package for fluorescence imaging. 7275 - Gareth Cross:
wrenfold: Symbolic code generation for robotics. 7303 - Felix Böhm, Moritz Makowski, Patrick Aigner, Jia Chen:
Tenta: Remote and Real-Time Sensor Network Management. 7311 - Sevgi Akten Karakaya, Mehmet Hakan Satman:
pycellga: A Python package for improved cellular genetic algorithms. 7322 - David Landa-Marbán, Tor Harald Sandve:
pyopmspe11: A Python framework using OPM Flow for the SPE11 benchmark project. 7357 - Brice Letcher:
delfies: a Python package for the detection of DNA breakpoints with neo-telomere addition. 7385 - Tom Wagg, Katelyn Breivik, Mathieu Renzo, Adrian M. Price-Whelan:
cogsworth: A Gala of COSMIC proportions combining binary stellar evolution and galactic dynamics. 7400 - Logan Mondal Bhamidipaty, Mykel J. Kochenderfer, Trevor Hastie:
ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis. 7403 - Yuefan Ji, Matthew Murbach, Daniel T. Schwartz:
nleis.py: A Nonlinear Electrochemical Impedance Analysis Toolbox. 7424 - Elmongi Elbellili, Daan Huybrechs, Ben Lauwens:
QuantizedSystemSolver: A discontinuous ODE system solver in Julia. 7434 - Mark Zolotas, Philip Long, Taskin Padir:
robot_collision_checking: A Lightweight ROS 2 Interface to FCL (Flexible Collision Library). 7473 - Daniel S. Stich, Julie L. Nieland, Timothy F. Sheehan:
dia: An R package for the National Oceanic and Atmospheric Administration dam impact analysis. 7475 - Joe Thorley, Rebecca Fisher, David Fox, Carl Schwarz:
ssdtools v2: An R package to fit Species Sensitivity Distributions. 7492 - Lionel Constantin, Dominik Brunner, Joel Thanwerdas, Corina Keller, Michael Steiner, Erik Koene:
Emiproc: A Python package for emission inventory processing. 7509 - Rohan Babbar, Matteo Ravasi, Yuxi Hong:
PyLops-MPI - MPI Powered PyLops with mpi4py. 7512 - Peter Gadomski, Preston J. Hartzell:
antimeridian: A Python package for correcting geometries that cross the 180th meridian. 7530 - Vladimir Mikheev, Benedikt V. Ehinger:
UnfoldMakie.jl: EEG/ERP visualization package. 7560 - Clemens Eppner, Adithyavairavan Murali, Caelan Reed Garrett, Rowland O'Flaherty, Tucker Hermans, Wei Yang, Dieter Fox:
scene_synthesizer: A Python Library for Procedural Scene Generation in Robot Manipulation. 7561 - Dylan Bouchard, Mohit Singh Chauhan, David Skarbrevik, Viren Bajaj, Zeya Ahmad:
LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases. 7570 - Jed Homer, Oliver Friedrich:
SBIAX: Density-estimation simulation-based inference in JAX. 7606
Volume 10, Number 106, February 2025
- Tim Furlan, Jonathan Stollberg, Andreas Menzel:
Paraqus: Exporting Finite Element Simulation Results from Abaqus to VTK. 5729 - Maggie Voetberg, Ashia Livaudais, Becky Nevin, Omari Paul, Brian Nord:
DeepBench: A simulation package for physical benchmarking data. 6774 - Johannes Holke, Johannes Markert, David Knapp, Lukas Dreyer, Sandro Elsweijer, Niklas Böing, Ioannis Lilikakis, Jakob Fussbroich, Tabea Leistikow, Florian Becker, Veli Uenlue, Ole Albers, Carsten Burstedde, Achim Basermann, Chiara Hergl, Weber Julia, Kathrin Schoenlein, Jonas Ackerschott, Andreev Evgenii, Zoltan Csati, Alexandra Dutka, Benedict Geihe, Pierre Kestener, Andrew Kirby, Hendrik Ranocha, Michael Schlottke-Lakemper:
t8code - modular adaptive mesh refinement in the exascale era. 6887 - Manuel Rausch, Sascha Meyen, Sebastian Hellmann:
statConfR: An R Package for Static Models of Decision Confidence and Metacognition. 6966 - Theresa Pollinger, Marcel Hurler, Alexander Van Craen, Michael Obersteiner, Dirk Pflüger:
DisCoTec: Distributed higher-dimensional HPC simulations with the sparse grid combination technique. 7018 - John M. Aiken, Gareth Jones, Xueqing Yin, Anrijs Abele, Christopher J. Woods, Richard M. Westaway, Jonathan L. Bamber:
4DModeller: a spatio-temporal modelling package. 7047 - Robin Chartrand, Robert Fajber, Georgy E. Manucharyan:
NcCut: A NetCDF Viewer and Transecting Tool. 7185 - Maximilian Wolf, Selina Götz, Georg K. H. Madsen, Theodoros Dimopoulos:
COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements. 7291 - Joseph Emile Honour Percival, Benjamin Palsa Leamon:
PyForestScan: A Python library for calculating forest structural metrics from lidar point cloud data. 7314 - Jennifer A. Clark, Nathan Duff, Andrew Abi Mansour, Erik E. Santiso:
DESPASITO: A Python Package for SAFT EOS Parametrization and Thermodynamic Calculations. 7365 - Jan F. Wiegner, Julia L. Tiggeloven, Luca Bertoni, Inge M. Ossentjuk, Matteo Gazzani:
AdOpT-NET0: A technology-focused Python package for the optimization of multi-energy systems. 7402 - Jonathan M. Waldrop, Ryan M. Richard:
Sigma: Uncertainty Propagation for C++. 7404 - Thomas Holland, Daniel Cummins, Monica Marinescu:
PyProBE: Python Processing for Battery Experiments. 7474 - Raphaël Prat, Thierry Carrard, Lhassan Amarsid, Vincent Richefeu, Carlo-Elia Doncecchi, Paul Lafourcade, Guillaume Latu, Jean-Mathieu Vanson:
ExaDEM: a HPC application based on exaNBody targeting scalable DEM simulations with complex particle shapes. 7484 - Ankush Aggarwal, Ross Williams, Claire Rosnel, Silvia Renon, Jude M. Hussain, André F. Schmidt, Shiting Huang, Sean McGinty, Andrew McBride:
pyMechT: A Python package for mechanics of soft tissues. 7490 - Darren J. Wilkinson:
jax-smfsb: A Python library for stochastic systems biology modelling and inference. 7491 - Dingshan Deng, Ilaria Pascucci, Rachel B. Fernandes:
ysoisochrone: A Python package to estimate masses and ages for YSOs. 7493 - David O'Gara, Mickaël Binois, Roman Garnett, Ross A. Hammond:
hetGPy: Heteroskedastic Gaussian Process Modeling in Python. 7518 - David Woodburn:
r3f: Rotation of 3-dimensional Reference Frames. 7534 - Gabriel Couture, Yannick Lemaréchal, Philippe Després:
PyOrthanc: A Python Interface for Orthanc DICOM Servers. 7562 - Mistral Contrastin, Raoul Hidalgo Charman, Matthew Danish, Benjamin Orchard, Dominic Orchard, Andrew Rice, Jason Xu:
fortran-src: Fortran static analysis infrastructure. 7571 - Salvador V. Balkus, Nima S. Hejazi:
CausalTables.jl: Simulating and storing data for statistical causal inference in Julia. 7580 - Fábio Madeira, Nandana Madhusoodanan, Joonheung Lee, Alberto Eusebi, Ania Niewielska, Sarah Butcher:
Taxonomy Resolver: A Python package for building and filtering taxonomy trees. 7604 - Markus Pichler:
idf-analysis: Heavy rainfall intensity as a function of duration and return period. 7607 - Toru Seo:
UXsim: lightweight mesoscopic traffic flow simulator in pure Python. 7617 - Simon R. Parker, Linda Vesel, Eric O. Ohuma:
gigs: A package for standardising fetal, neonatal, and child growth assessment. 7655
Volume 10, Number 107, March 2025
- Joshua Benjamin Schramm, Marcel Lichters:
validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools. 6708 - Evaristo Rojas-Mayoral, Braulio Rojas-Mayoral, Federico A. Méndez-Sánchez:
NERD: Numerical Estimation of Rodenticide Density. 6736 - Martin Rätz, Fabian Wüllhorst, Rita Streblow, Dirk Müller:
AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export. 7344 - Simon Sekavcnik, Kareem H. El-Safty, Janis Nötzel:
PhotonWeave. 7468 - Steven Golovkine:
FDApy: a Python package for functional data. 7526 - Truls Flatberg, Julian Straus, Lars Hellemo:
TimeStruct.jl - flexible multi-horizon time modelling in optimization models. 7578
Volume 10, Number 108, April 2025
- David L. Birtwell, Heather Williams, Tom Hutchinson, Louis Lee, Hayden Freedman, Christian J. Stoeckert Jr.:
Carnival: JVM Property graph data unification toolkit. 5117 - Christopher G. Stahl, Kristan J. Markey, Brian C. Jewell, Dahnish Shams, Michele M. Taylor, A. Amina Wilkins, Sean Watford, Andy Shapiro, Michelle Angrish:
PDF Entity Annotation Tool (PEAT). 5336 - Anthony Lim:
quickBayes: An analytical approach to Bayesian marginal likelihoods. 6230 - Judith Schepers, Luis Lips, Maanik Marathe, Benedikt V. Ehinger:
UnfoldSim.jl: Simulating continuous event-based time series data for EEG and beyond. 6641 - Philip Gouverneur, Frédéric Li, Luisa Luebke, Tibor M. Szikszay, Sonja-Dana Roelen, Jarek Krajewski, Kerstin Luedtke, Marcin Grzegorzek:
eVAS: A user-friendly electronic Visual Analogue Scale. 6876 - Fabia Miorelli, Niklas Wulff, Benjamin Fuchs, Hans Christian Gils, Patrick Jochem:
venco.py: A Python model to represent the charging flexibility and vehicle-to-grid potential of electric vehicles in energy system models. 6896 - Keisuke Adachi, Minoru Kanega:
TopologicalNumbers.jl: A Julia package for topological number computation. 6944 - Scott W. Linderman, Peter G. Chang, Giles Harper-Donnelly, Aleyna Kara, Xinglong Li, Gerardo Duran-Martin, Kevin Murphy:
Dynamax: A Python package for probabilistic state space modeling with JAX. 7069 - Scott E. Field, Vijay Varma, Jonathan Blackman, Bhooshan Gadre, Chad R. Galley, Tousif Islam, Keefe Mitman, Michael Pürrer, Adhrit Ravichandran, Mark A. Scheel, Leo C. Stein, Jooheon Yoo:
GWSurrogate: A Python package for gravitational wave surrogate models. 7073 - Julius Gervelmeyer, Sarah Müller, Ziwei Huang, Philipp Berens:
Fundus Image Toolbox: A Python package for fundus image processing. 7101 - Aravind Sundararajan, Varun Joshi, Brian R. Umberger, Matthew C. O'Neill:
MocoExtendProblem: Interface Between OpenSim and MATLAB for Rapidly Developing Direct Collocation Goals in Moco. 7110 - Silke Maes, Frederik De Ceuster, Marie Van de Sande, Leen Decin:
MACE: a Machine-learning Approach to Chemistry Emulation. 7148 - Lucas Korol, Robert J. Green, Jesus P. Curbelo, Raymond J. Spiteri:
GO-RXR: Global Optimization of Resonant X-ray Reflectometry. 7165 - Jim Hester, Florent Angly, Michael Chirico, Russ Hyde, Ren Kun, Indrajeet Patil, Alexander Rosenstock:
Static Code Analysis for R. 7240 - Matias D. Cattaneo, Rajita Chandak, Michael Jansson, Xinwei Ma:
lpcde: Estimation and Inference for Local Polynomial Conditional Density Estimators. 7241 - Firas A. Khasawneh, Elizabeth Munch, Danielle Barnes, Max M. Chumley, Ismail Güzel, Audun D. Myers, Sunia Tanweer, Sarah Tymochko, Melih C. Yesilli:
Teaspoon: A Python Package for Topological Signal Processing. 7243
Volume 10, Number 109, May 2025
- Yongji Wang, Ching-Yao Lai:
DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX. 7254 - Lorena Acuña, Laura Kreidberg, Meng Zhai, Paul Mollière, Morgan Fouesneau:
GASTLI: A Python package for coupled interior-atmosphere modelling of volatile-rich planets. 7288 - Tobias Bode:
AutoPDEx: An Automized Partial Differential Equation solver based on JAX. 7300 - Michael S. Petersen, Martin D. Weinberg:
EXP: a Python/C++ package for basis function expansion methods in galactic dynamics. 7302 - Miguel Castillón:
PhaseFieldX: An Open-Source Framework for Advanced Phase-Field Simulations. 7307 - Juan Pablo P. de Aquino, José Fernando M. de Firmino, Diogo D. Moreira, Ricardo S. de Job:
DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections. 7308 - James C. Ross, Tingting Zhao:
bayes_traj: A Python package for Bayesian trajectory analysis. 7323 - Asim Shrestha, Adam Watkins, Fereshteh Yousefirizi, Arman Rahmim, Carlos F. Uribe:
RT-utils: A Minimal Python Library for RT-struct Manipulation. 7361 - Danilo Couto de Souza, Pedro Leite da Silva Dias, Carolina B. Gramcianinov, Ricardo Saraiva de Camargo:
CycloPhaser: A Python Package for Detecting Extratropical Cyclone Life Cycles. 7363 - George Simmons, David Stern, Georg Osang, Luigi Ponti, Andrew Paul Gutierrez, Chiara Facciolà, Timothy Hosgood:
Psymple: A Python package for complex systems modelling. 7364 - Jaren N. Ashcraft, Ewan S. Douglas, William Melby, Manxuan Zhang, Kenji Mulhall, Ramya M. Anche, Emory Jenkins, Maxwell A. Millar-Blanchaer:
Katsu: A Python package for Mueller and Stokes simulation and polarimetry. 7375 - Yicheng Qiang, David Zwicker:
flory: A Python package for finding coexisting phases in multicomponent mixtures. 7388 - Newell H. Moser, Alexander K. Landauer, Orion L. Kafka:
IMPPY3D: Image Processing in Python for 3D Image Stacks. 7405 - Philip Cardiff, Ivan Batistic, Zeljko Tukovic:
solids4foam: A toolbox for performing solid mechanics and fluid-solid interaction simulations in OpenFOAM. 7407 - Matilde Gargiani, Philip Pawlowsky, Robin Sieber, Václav Hapla, John Lygeros:
madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes. 7411 - Nicholas Van Alfen, Duncan Campbell, Andrew P. Hearin, Jonathan Blazek:
Halotools: A New Release Adding Intrinsic Alignments to Halo-Based Methods. 7421 - Humberto Medina, Christopher D. Ellis, Tom Mazin, Oscar Osborn, Timothy Ward, Stephen Ambrose, Svetlana Aleksandrova, Benjamin Rothwell, Carol Eastwick:
XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library. 7441 - Isaac Kinley:
tempodisco: an R package for temporal discounting. 7472 - Lukas Burgholzer, Yannick Stade, Tom Peham, Robert Wille:
MQT Core: The Backbone of the Munich Quantum Toolkit (MQT). 7478 - Mark Zolotas, Philip Long, Keerthi Sagar, Taskin Padir:
constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators. 7481 - Sayak Chakrabarty, Souradip Pal:
ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach. 7489 - Martin Wendt, Marvin Henschel, Oskar Fjonn Soth:
FELINE: A Tool to Detect Emission Line Galaxies in 3D Data. 7528 - Austin M. Weber:
Algorithms for SEM-EDS Mineral Dust Classification. 7533 - Henrik Melin:
h3ppy: An open-source Python package for modelling and fitting H$_3^+$ spectra. 7536 - Leonie Sara Plaga, Valentin Bertsch:
cd2es: Converting climate data to energy system input data. 7541 - Jacques Dainat:
AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment. 7545 - Selvakumar Kamatchinathan, Suresh Hewapathirana, Chakradhar Bandla, Santiago Insua, Juan Antonio Vizcaíno, Yasset Pérez-Riverol:
pridepy: A Python package to download and search data from PRIDE database. 7563 - Alaa Reguei, Samuel Murail:
Af-analysis: a Python package for Alphafold analysis. 7577 - Ioannis G. Tsoulos, Vasileios Charilogis, Glykeria Kyrou, Vasileios N. Stavrou, Alexandros T. Tzallas:
OPTIMUS: A Multidimensional Global Optimization Package. 7584 - Johannes Zauner, Steffen Hartmeyer, Manuel Spitschan:
LightLogR: Reproducible analysis of personal light exposure data. 7601 - Jack Atkinson, Athena Elafrou, Elliott Kasoar, Joseph G. Wallwork, Thomas Meltzer, Simon Clifford, Dominic Orchard, Chris Edsall:
FTorch: a library for coupling PyTorch models to Fortran. 7602 - Trung Ha, Joonas Nättilä, Jordy Davelaar:
aweSOM: a CPU/GPU-accelerated Self-organizing Map and Statistically Combined Ensemble Framework for Machine-learning Clustering Analysis. 7613 - Riccardo Boero:
An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews. 7616 - Martin A. Stoffel, Bryan M. Li, Kalle Westerling, Sophie Arana, Maximilian Balmus, Eric G. Daub, Steven A. Niederer:
AutoEmulate: A Python package for semi-automated emulation. 7626 - Ewout ter Hoeven, Jan Kwakkel, Vincent Hess, Thomas Pike, Boyu Wang, Rht, Jackie Kazil:
Mesa 3: Agent-based modeling with Python in 2025. 7668 - Robrecht Cannoodt, Louise Deconinck, Artuur Couckuyt, Nikolay S. Markov, Luke Zappia, Malte D. Lücken, Marta Interlandi, Yvan Saeys, Wouter Saelens:
funkyheatmap: Visualising data frames with mixed data types. 7698 - Damar Wicaksono, Uwe Hernandez Acosta, Sachin Krishnan Thekke Veettil, Jannik Kissinger, Michael Hecht:
Minterpy: multivariate polynomial interpolation in Python. 7702 - Younes Strittmatter, Sebastian Musslick:
SweetBean: A declarative language for behavioral experiments with human and artificial participants. 7703 - Evan T. Hockings:
QuantumACES.jl: design noise characterisation experiments for quantum computers. 7707 - J. Eduardo Vera-Valdés:
LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia. 7708 - Thomas Helfer, Guillaume Latu, Raphaël Prat, Maxence Wangermez, Francesca Cuteri:
MFEM/MGIS, a HPC mini-application targeting nonlinear thermo-mechanical simulations of nuclear fuels at mesoscale. 7719 - Emily Tour, Kabir Manandhar Shrestha, Robert Turnbull:
Potnia: A Python library for the conversion of transliterated ancient texts to Unicode. 7725 - Adam Wysokinski:
NeuroAnalyzer: Julia toolbox for analyzing neurophysiological data. 7734 - Michael Foster, Andrew G. Clark, Christopher Wild, Farhad Allian, Robert D. Turner, Richard J. Somers, Nicholas Latimer, Neil Walkinshaw, Robert M. Hierons:
The Causal Testing Framework. 7739 - Pierre-Antoine Comby, Guillaume Daval-Frerot, Caini Pan, Asma Tanabene, Léna Oudjman, Matteo Cencini, Philippe Ciuciu, Chaithya G. R.:
MRI-NUFFT: Doing non-Cartesian MRI has never been easier. 7743 - Jan Boelts, Michael Deistler, Manuel Glöckler, Álvaro Tejero-Cantero, Jan-Matthis Lueckmann, Guy Moss, Peter Steinbach, Thomas Moreau, Fabio Muratore, Julia Linhart, Conor Durkan, Julius Vetter, Benjamin Kurt Miller, Maternus Herold, Abolfazl Ziaeemehr, Matthijs Pals, Theo Gruner, Sebastian Bischoff, Nastya Krouglova, Richard Gao, Janne K. Lappalainen, Bálint Mucsányi, Felix Pei, Auguste Schulz, Zinovia Stefanidi, Pedro Rodrigues, Cornelius Schröder, Faried Abu Zaid, Jonas Beck, Jaivardhan Kapoor, David S. Greenberg, Pedro J. Gonçalves, Jakob H. Macke:
sbi reloaded: a toolkit for simulation-based inference workflows. 7754 - Matthew N. Crowe:
QGDipoles.jl: A Julia package for calculating dipolar vortex solutions to the Quasi-Geostrophic equations. 7767 - Nathaniel Starkman, Adrian M. Price-Whelan, Jake Nibauer:
unxt: A Python package for unit-aware computing with JAX. 7771 - Jan Janssen, Michael Gilbert Taylor, Ping Yang, Jörg Neugebauer, Danny Perez:
Executorlib - Up-scaling Python workflows for hierarchical heterogenous high-performance computing. 7782 - Sayak Chakrabarty, Souradip Pal:
MM-PoE: Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models. 7783 - Odd A. Andersen:
Topography-based surface water modeling in Julia, with support for infiltration and temporal developments. 7785 - Daniel Schuch:
eva3dm: A R-package for model evaluation of 3D weather and air quality models. 7797 - Ruoyan Meng, Gabriella d'Albenzio, Ole Vegard Solberg, Geir Arne Tangen, Rafael Palomar:
Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning. 7798 - Spyros Rigas, Michalis Papachristou:
jaxKAN: A unified JAX framework for Kolmogorov-Arnold Networks. 7830 - Wenbo Wu, Xinyi Zhang, Jann Spiess, Rahul Ladhania:
rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering. 7843 - Kurt Irvin M. Rojas, Yoshitada Morikawa, Ikutaro Hamada:
VibIR-Parallel-Compute: Enhancing Vibration and Infrared Analysis in High-Performance Computing Environments. 7855 - Rahil Makadia, Davide Farnocchia, Steven R. Chesley, Siegfried Eggl:
Gauss-Radau Small-body Simulator (GRSS): An Open-Source Library for Planetary Defense. 7861 - Thomas Kerwin:
Pydre: A Python package for driving simulation data reduction. 7870 - Rhyd Lewis, Geraint Palmer:
GCol: A High-Performance Python Library for Graph Colouring. 7871 - James W. Trayford, Samantha Youles, Chris M. Harrison, Rose Shepherd, Nicolas Bonne:
strauss: Sonification Tools and Resources for Analysis Using Sound Synthesis. 7875 - Apostolos Chalkis, Vissarion Fisikopoulos, Marios Papachristou, Elias P. Tsigaridas:
volesti: A C++ library for sampling and volume computation on convex bodies. 7886 - Patrick J. Taylor, Benjamin J. Morgan:
pengWann: Descriptors of chemical bonding from Wannier functions. 7890 - Dan Bonachea, Katherine Rasmussen, Brad Richardson, Damian W. I. Rouson:
Caffeine: A parallel runtime library for supporting modern Fortran compilers. 7895 - Adam B. Rohrlach, Jonathan Tuke, Divya Ratan Popli, Wolfgang Haak:
BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data. 7916 - Alexander Coulter, Rebecca Lee, Irina Gaynanova:
fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses. 7925 - Daniel Peláez-Zapata, Frédéric Dias:
EWDM: A wavelet-based method for estimating directional spectra of ocean waves. 7942 - Micah D. Gale, Travis J. Labossiere-Hickman, Brenna A. Carbno, Andrew J. Bascom:
MontePy: a Python library for reading, editing, and writing MCNP input files. 7951 - Adrian Niemann, Dmitry Puzyrev, Ralf Stannarius:
ParticleTracking: A GUI and library for particle tracking on stereo camera images. 5986 - Mohammad Amin Sadeghi, Runze Zhang, Jason Hattrick-Simpers:
AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning. 6256 - Nathan Decaux, Pierre-Henri Conze, Juliette Ropars, Xinyan He, Frances T. Sheehan, Christelle Pons, Douraied Ben Salem, Sylvain Brochard, François Rousseau:
LabelProp: A semi-automatic segmentation tool for 3D medical images. 6284 - Trevor Gokey:
BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS. 6653
Volume 10, Number 110, June 2025
- Nathan Martindale, Scott Stewart:
ICAT: The Interactive Corpus Analysis Tool. 6873 - Utpal Singh, Sinan Ozaydin, Vasileios Chatzaras, Patrice Rey:
SAnTex: A Python-based Library for Seismic Anisotropy Calculation. 6886 - Subhadeep Sarkar, Michael S. Petersen:
commensurability: a Python package for classifying astronomical orbits based on their toroid volume. 7009 - Hao-Ting Wang, Rémi Gau, Natasha Clarke, Quentin Dessain, Lune Bellec:
Giga Connectome: a BIDS-app for time series and functional connectome extraction. 7061 - Dena J. Clink, Abdul Hamid Ahmad:
gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data. 7250 - Igor Dornelles Schoeller Siciliani, Paulo Henrique dos Santos:
corrp: An R package for multiple correlation-like analysis and clustering in mixed data. 7319 - Andy Wilkins, Nicholas J. Beeton, Maud El-Hachem, Keith R. Hayes, Geoffrey R. Hosack:
Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes. 7324 - Nikita Kavokine, Hao Lu, Thomas Ayral, Michel Ferrero, Nils Wentzell, Olivier Parcollet:
CTSEG: A segment picture quantum impurity solver based on TRIQS. 7425 - Matthew T. Warkentin, John M. Hutchinson, Yibing Ruan, Darren R. Brenner:
openmpp: An R package for dynamic microsimulation modeling using OpenM++. 7435 - Christopher Donnay, Moon Duchin, Jack Gibson, Zach Glaser, Andrew Hong, Malavika Mukundan, Jennifer Wang:
VoteKit: A Python package for computational social choice research. 7477 - Garrett K. Keating, Bryna J. Hazelton, Matthew Kolopanis, Steven G. Murray, Adam P. Beardsley, Daniel C. Jacobs, Nicholas S. Kern, Adam Lanman, Paul La Plante, Jonathan C. Pober, Pyxie Star:
pyuvdata v3: an interface for astronomical interferometric data sets in Python. 7482 - Anders Reenberg Andersen, Jesper Fink Andersen:
MDPSolver: An Efficient Solver for Markov Decision Processes. 7544 - Arkavo Hait, Santanu Mahapatra:
CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation. 7589 - Karthik Menon, Jakob Richter, Martin R. Pfaller, Jonathan Pham, Emilin M. Mathew, Kaitlin E. Harold, Nicholas C. Dorn, Aekaansh Verma, Alison L. Marsden:
svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations. 7595 - Abhinav Sharma, Talya Conradie, David Martino, Stephen Stick, Patricia Agudelo-Romero:
target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files. 7608 - Sebastián José Herrera Monterrosa, Carlos Andrés Masmela Pinilla:
Phitter: A library designed to streamline the process of fitting and analyzing probability distributions. 7625 - Gabriel S. Gerlero, Pablo A. Kler:
foamlib: A modern Python package for working with OpenFOAM. 7633 - Vijini Mallawaarachchi, Anuradha Wickramarachchi, Robert McArthur, Yapeng Lang, Katherine Caley, Gavin A. Huttley:
GraphBin-Tk: assembly graph-based metagenomic binning toolkit. 7713 - Jonas Pleyer, Christian Fleck:
cellular_raza: Cellular Agent-based Modeling from a Clean Slate. 7723 - Harrison Nicholls, Raymond Pierrehumbert, Tim Lichtenberg:
AGNI: A radiative-convective model for lava planet atmospheres. 7726 - Barnaby Dobson, Diego Alonso-Álvarez, Taher Chegini:
SWMManywhere: Synthesise Urban Drainage Network Models Anywhere in the World. 7729 - Kjetil Olsen Lye, Tobias Meyer Andersen, Atgeirr Flø Rasmussen, Jakob Torben:
gpu-ISTL - Extending OPM Flow with GPU Linear Solvers. 7740 - Thomas Helfer, Maxence Wangermez, Eric Simo, Thomas Nagel, Christian B. Silbermann, Lorenzo Riparbelli:
The MFrontGallery project. 7742 - Aristarchos Mavridis, Carmine D'Agostino:
NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance. 7745 - Tian Tian, Lucas R. Timmerman, Shashikant Kumar, Benjamin M. Comer, Andrew J. Medford, Phanish Suryanarayana:
SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations. 7747 - Snir Meiri, Efi Efrati:
LCOI: Local crystalline orientation identifier using mask fitting implemented in MATLAB. 7748 - Colm Talbot, Amanda Farah, Shanika Galaudage, Jacob Golomb, Hui Tong:
GWPopulation: Hardware agnostic population inference for compact binaries and beyond. 7753 - Gavin Huttley, Katherine Caley, Robert McArthur:
diverse-seq: an application for alignment-free selecting and clustering biological sequences. 7765 - Greg Sallaberry, Zofia Kaczmarek, Peter McGill, Scott E. Perkins, William A. Dawson, Caitlin G. Begbie:
popclass: A Python Package for Classifying Microlensing Events. 7769 - John Coleman, Kellis Kincaid, Gerry L. Knapp, Benjamin Stump, Samuel Temple Reeve, Matthew Rolchigo, Alex Plotkowski:
AdditiveFOAM: A Continuum Multiphysics Code for Additive Manufacturing. 7770 - Gerd Specht, Clemens Schmid, Denise Kühnert, Arthur Kocher:
ggret: An R package for visualising and manipulating tree‑based phylogenetic networks. 7773 - Robbi Bishop-Taylor, Claire Phillips, Stephen Sagar, Vanessa Newey, Tyler Clark Sutterley:
eo-tides: Tide modelling tools for large-scale satellite Earth observation analysis. 7786 - Saransh Chopra, Henry Schreiner, Eduardo Rodrigues, Jonas Eschle, Jim Pivarski:
Vector: JIT-compilable mathematical manipulations of ragged Lorentz vectors. 7791 - Jacob Hartzer, Srikanth Saripalli:
EKF_CAL: Extended Kalman Filter-based Calibration and Localization. 7793 - Alexander V. Mantzaris:
BenchmarkDataNLP.jl: Synthetic Data Generation for NLP Benchmarking. 7844 - Fabian Schmidt, Nathan Weisz, Thomas Hartmann:
PyRASA - Spectral parametrization in python based on IRASA. 7852 - Kathleen M. Kuesters, Jessica M. Blanton, Jeffrey D. Kovach, Walter A. Blank, Lúcio M. Barbosa, Luciano K. Silva, Mitermayer G. Reis, Ronald E. Blanton:
pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples. 7853 - Moritz Leucke, Ramón L. Panadés-Barrueta, Ekin E. Bas, Dorothea Golze:
Analytic continuation component of the GreenX library: robust Padé approximants with symmetry constraints. 7859 - Silvia Barbiero, Charlotte Soneson, Prisca Liberali, Michael B. Stadler:
ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets. 7882 - Maximilian Weigert, Alexander Bauer, Jana Gauß, Asmik Nalmpatian:
fuzzyclara: Efficient Medoid-based Clustering Algorithms for Large and Fuzzy Data. 7887 - Logan Lang, Eduardo Hernández, Kamal Choudhary, Aldo H. Romero:
ParquetDB: A Lightweight Python Parquet-Based Database. 7932 - Clay J. Morrow, Anthony R. Ives:
remotePARTS: Spatiotemporal autoregression analyses for large data sets. 7937 - Gabriel Díaz Iturry, Marco C. Matthies, Guy Peer, Daniel Vedder:
AquaCrop.jl: A Process-Based Model of Crop Growth. 7944 - Zhaiyu Chen:
abspy: A Python package for 3D adaptive binary space partitioning and modeling. 7946 - Paula Rulff:
elfe3D v1.0.1: Modelling with the total electric field approach using finite elements in 3D. 7949 - Hannah Klion, Robert D. Hetland, Jean M. Sexton, Ann S. Almgren, Iulian R. Grindeanu, Kyle Hinson, Vijay Mahadevan:
REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX). 7958 - Dominique Makowski, Mattan S. Ben-Shachar, Brenton M. Wiernik, Indrajeet Patil, Rémi Thériault, Daniel Lüdecke:
modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions. 7969 - Romain Egele, Prasanna Balaprakash, Gavin M. Wiggins, Brett Eiffert:
DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning. 7975 - Ola Tangen Kulseng, Stanley Miao, Franz G. Fuchs, Alexander J. Stasik:
QuantumReservoirPy: A Software Package for Time Series Prediction. 7994 - Agathe Senellart, Clément Chadebec, Stéphanie Allassonnière:
MultiVae: A Python package for Multimodal Variational Autoencoders on Partial Datasets. 7996 - Seb Dalgarno, John Boulanger, Ayla Pearson, Joe Thorley, Troy Hegel, Barry Nobert, Dave Hervieux:
bbousuite: A set of R packages to facilitate analysis of boreal caribou survival and recruitment data. 7997 - Michal Charemza:
OpenTTDLab: A Python framework for reproducible experiments using OpenTTD. 8014 - Dennis Klinkhammer:
AI-ANNE: (A) (N)eural (N)et for (E)xploration. 8039 - Sam Harrison, Cansu Uluseker, Patrizia Pfohl, Katherine Santizo, Joana Sipe, Brandon Lopez, Antonia Praetorius, Richard K. Cross, Gbotemi A. Adediran, Claus Svendsen, Wendel Wohlleben, Mark Wiesner:
FRAGMENT-MNP: A model of micro- and nanoplastic fragmentation in the environment. 8061 - Robert L. Baker, Colin Smith, Sarah E. Wright, Issac Quevedo, Kristin Vanderbilt, Carl Boettiger, Judd M. Patterson, Joe DeVivo:
NPSdataverse: a suite of R packages for data processing, authoring Ecological Metadata Language metadata, checking data-metadata congruence, and accessing data. 8066 - Marilyn De Graeve, Wout Bittremieux, Thomas Naake, Carolin Huber, Matthias Anagho-Mattanovich, Nils Hoffmann, Pierre Marchal, Victor Chrone, Philippine Louail, Helge Hecht, Michael Witting, Johannes Rainer:
SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python. 8070 - Aslan Noorghasemi, Christopher McComb:
KeepDelta: A Python Library for Human-Readable Data Differencing. 8075 - Maxim Van de Wynckel, Beat Signer:
OpenHPS: A Modular Framework to Facilitate the Development of FAIR Positioning Systems. 8113 - Stefan Kopecz, Joshua Lampert, Hendrik Ranocha:
PositiveIntegrators.jl: A Julia library of positivity-preserving time integration methods. 8130 - Milan Rother:
PathSim - A System Simulation Framework. 8158 - Lars Ivar Hatledal:
Ecos: An accessible and intuitive co-simulation framework. 8182 - Alexander V. Mantzaris:
LMDiskANN.jl: An Implementation of the Low Memory Disk Approximate Nearest Neighbors Search Algorithm. 8199 - Alasdair Warwick, Benjamin Zuckerman, Chuin Ying Ung, Robert Luben, Abraham Olvera Barrios:
gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API. 8249 - Alexander Kolpakov, Igor Rivin:
DiRe - JAX: A JAX based Dimensionality Reduction Algorithm for Large-scale Data. 8264 - Muhammad Shahbaz, Shaurya Agarwal:
LiGuard: Interactively and Rapidly Create Point-Cloud and Image Processing Pipelines. 6751
Volume 10, Number 111, July 2025
- Patrick Cole:
PyGMI - a python package for geoscience modelling and interpretation. 7019 - Srinath Kailasa:
kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust. 7124 - Logan Mondal Bhamidipaty, Mykel J. Kochenderfer:
CompressedBeliefMDPs.jl: A Julia Package for Solving Large POMDPs with Belief Compression. 7346 - Samuel Rincé, Adrien Banse:
EcoLogits: Evaluating the Environmental Impacts of Generative AI. 7471 - Carlo Brunelli:
SegregatedVMSSolver.jl: Linearized and Segregated Stabilized Solver for Large Eddy Simulation in Julia. 7564 - Xilin Xia, Xiaodong Ming:
SynxFlow: A GPU-accelerated Python package for multi-hazard simulations. 7586 - Lasse B. Anderson, Roberto Agromayor, Fredrik Haglind, Lars Olof Nord:
TurboFlow: Meanline Modelling of Axial Turbines. 7588 - Felix Gerick:
Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains. 7593 - Tobey B. Carman, Hélène Genet, Ruth A. Rutter, Elchin Jafarov, Eugénie Euskirchen, Ben Maglio, Joy Clein, Valeria Briones, Andrew Mullen, Heather Greaves, A. D. McGuire, Fengming Yuan, Chu-Chun Chang, Joshua M. Rady, Dogukan Teber, Brendan M. Rogers, Trevor Smith, Hannah Mevenkamp, Mark J. Lara, Qianlai Zhuang, Shuhua Yi:
DVMDOSTEM v0.8.3: a terrestrial ecosystem model designed to represent arctic, boreal and permafrost ecosystem dynamics. 7667 - Eva Alonso-Epelde, Clàudia Rodés-Bachs:
MEDUSA: An R tool to model equity and distributional impacts. 7697 - Erik Bergbäck Knudsen, Lorenzo Chierici:
CAD_to_OpenMC: from CAD design to particle transport. 7710 - Angel Monsalve, Sebastian Bernal, Oscar Link:
RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics. 7823 - Anton Elmiger, Kai von Szadkowski, Timo Korthals:
Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data. 7854 - Samuel Leweke, Jan Michael Breuer, Johannes Schmölder, Ronald Jäpel, Hannah Lanzrath, Jayghosh Subodh Rao, Jazib Hassan, Wendi Zhang, Antonia Berger, William Heymann, Eric von Lieres:
CADET-Core 5.0: High-Performance Solver for Advanced Biotechnology Process Modeling. 7881 - Guillaume Le Goc, Alexis d'Humières, Antoine Lesage, Julien Bouvier:
cuisto: A Python package to quantify neurohistological data from QuPath and ABBA. 7906 - Manuel Schmid, Jeffrey D. Massey, Marco G. Giometto:
PointClouds.jl: Fast & flexible processing of lidar data. 7952 - Arthur Yan Lin, Lucas Ortengren, Seonwoo Hwang, Yong-Cheol Cho, Jigyasa Nigam, Rose K. Cersonsky:
AniSOAP: Machine Learning Representations for Coarse-grained and Non-spherical Systems. 7954 - Juan M. Losada, Gregor Decristoforo:
Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions. 8032 - Alexander V. Mantzaris:
WunDeeDB.jl: An easy to use, zero config, WAL, SQLite backend vector database. 8033 - Varchas Gopalaswamy, Ethan Mentzer:
AutoUncertainties: A Python Package for Uncertainty Propagation. 8037 - Michael Horrell:
GBNet: Gradient Boosting packages integrated into PyTorch. 8047 - Nicholas D. Crosbie:
grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions. 8048 - Hannah N. Turney, Micaela Matta:
SwiftPol: A Python package for building and parameterizing in silico polymer systems. 8053 - Filip Wójcik, Marcin Malczewski:
HeXtractor: Extracting Heterogeneous Graphs from Structured and Textual Data for Graph Neural Networks. 8057 - Gaëtan Heidsieck, Tim Oberländer, Thomas Hay, Winfried Kurth:
Pointcloud: Implementation of point clouds as graphs in the 3D plant modeling platform GroIMP. 8062 - Tong Chen, S. Ghazaleh Dashti, Margarita Moreno-Betancur:
medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R. 8063 - Phong V. Le, Geeta Persad, Gabriel Perez, Ifeanyichukwu C. Nduka, William Mobley, Ethan T. Coon:
pyTCR: A tropical cyclone rainfall model for python. 8074 - Valentin Gartiser, Verena Lang, Martin Maier:
ConFluxPro: A toolkit for soil gas analysis. 8094 - Ibrahim Hadzic, Suraj Pai, Keno K. Bressem, Borek Foldyna, Hugo J. W. L. Aerts:
Lighter: Configuration-Driven Deep Learning. 8101 - Tim M. Tierney, Nicholas Alexander, John Ashburner, Nicole Labra Avila, Yaël Balbastre, Gareth R. Barnes, Yulia Bezsudnova, Mikael Brudfors, Korbinian Eckstein, Guillaume Flandin, Karl J. Friston, Amirhossein Jafarian, Olivia S. Kowalczyk, Vladimir Litvak, Johan Medrano, Stephanie Mellor, George C. O'Neill, Thomas Parr, Adeel Razi, Ryan C. Timms, Peter Zeidman:
SPM 25: open source neuroimaging analysis software. 8103 - Nils Holle, Sebastian Walfort, Riccardo Mazzarello, Martin Salinga:
fastatomstruct: A High-Performance Library for Structural and Dynamical Analysis of Atomic Systems. 8106 - Harry J. Stroud, Mark D. Wonnacott, Jonathan Barnoud, Rhoslyn Roebuck Williams, Mohamed Dhouioui, Adam McSloy, Ludovica Aisa, Luis E. Toledo, Phil Bates, Adrian J. Mulholland, David R. Glowacki:
NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality. 8118 - Alexander J. Daniel, Susan T. Francis:
3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI. 8121 - Stella Bourdin, Leo Saffin:
HuracanPy: A Python package for reading and analysing cyclone tracks. 8174 - Lars Hoffmann, Jan Clemens, Sabine Griessbach, Kaveh Haghighi Mood, Yi Heng, Farahnaz Khosrawi, Mingzhao Liu, Yen-Sen Lu, Catrin I. Meyer, Nils Nobre Wittwer, Xue Wu, Ling Zou:
MPTRAC: A high-performance Lagrangian transport model for atmospheric air parcel dispersion. 8177 - Márton Kardos, Kenneth C. Enevoldsen, Jan Kostkan, Ross Deans Kristensen-McLachlan, Roberta Rocca:
Turftopic: Topic Modelling with Contextual Representations from Sentence Transformers. 8183 - Luis Vargas-Rojas, Diane R. Wang:
dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration. 8188 - Sadie L. Bartholomew, Lincoln Colling, Abhishek Dasgupta, Anthony J. Greenberg, Loïc Lannelongue, Thibault Lestang, Carlos Martinez-Ortiz, Colin Sauzé, Andrew M. Walker, Adam Stuart Ward:
CATS: The Climate Aware Task Scheduler. 8251 - Rajmadan Lakshmanan, Alois Pichler:
StochasticDominance.jl: A Julia Package for Higher Order Stochastic Dominance. 8255 - Kevin Co, Amedeo Ceglia, Mickaël Begon:
pyScienceMode: an Open-Source Python Package to control electro-stimulator through the Hasomed's science mode protocol. 8259 - Zhiwei Wei, Bing Li, Rongqing Zhang:
AirFogSim: A Python Package for Benchmarking Collaborative Intelligence in Low-Altitude Vehicular Fog Computing. 8267 - Sara A. Miskovich, Bennet E. Meyers, Elpiniki Apostolaki-Iosifidou, Claire Berschauer, Chengcheng Ding, Aramis Dufour, David Jose Florez Rodriguez, Jonathan Goncalves, Alejandro Londono-Hurtado, Victor-Haoyang Lian, Tristan Lin, Junlin Luo, Xiao Ming, Duncan Ragsdale, Derin Serbetcioglu, Shixian Sheng, Jose St Louis, Tadatoshi Takahashi, Nimish Telang, Mitchell Victoriano, Haoxi Zhang, Nimish Yadav:
Solar Data Tools: a Python library for automated analysis of unlabeled PV data. 8478
Volume 10, Number 112, August 2025
- Jiangmei Xiong, Sarah C. Lotspeich, Joey B. Sherrill, Gustavo Amorim, Bryan E. Shepherd, Ran Tao:
sleev: An R Package for Semiparametric Likelihood Estimation with Errors in Variables. 7320 - Mengqi Zhao, Stephanie T. Morris, Claudia Tebaldi, Abigail Snyder:
gaia: An R package to estimate crop yield responses to temperature and precipitation. 7538 - Habiba Eldababy, Roshan Philip Saji, Panos Pantidis, Mostafa E. Mobasher:
Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB. 7610 - Sarah Henn, Joel David Schölzel, Tobias Beckhölter, Carla Wüller, Rawad Hamze, Dirk Müller:
Districtgenerator: Generating building-specific load profiles for residential districts. 7657 - Lea Dang, René Groh, Andreas M. Kist:
EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms. 7728 - Nicole Hill, Ayla Pearson, Andrea Kortello:
bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. 7752 - Lily Clements:
ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates. 7876 - Colin P. Folsom, Christiana Erba, Veronique Petit, Shaquann Seadrow, Patrick Stanley, Tali Natan, Bonnie Zaire, Mary E. Oksala, Federico Villadiego Forero, Robin Moore, Marisol Catalan Olais:
SpecpolFlow: a new software package for spectropolarimetry using Python. 7891 - Jamila Taaki, Athol Kemball, Farzad Kamalabadi:
PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades. 7917 - Penelope R. How:
GrIML: A Python package for investigating Greenland's ice-marginal lakes under a changing climate. 7927 - Zoltán Sylvester, Daniel F. Stockli, Nick Howes, Kalinda Roberts, Matthew A. Malkowski, Zsófia Poros, Rowan C. Martindale, Wilson Bai:
Segmenteverygrain: A Python module for segmentation of grains in images. 7953 - Benny Sun, Yuansi Chen:
PolytopeWalk: Sparse MCMC Sampling over Polytopes. 7957 - Phumthep Bunnak, Hisham Eldardiry, Matija Pavicevic, Jerry Zhuoer Feng, Stefano Galelli:
PowNet 2.0: A production cost modeling framework for large-scale power systems. 8035 - Ira Zibbu, Claus O. Wilke, Jeffrey E. Barrick:
seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies. 8065 - Thomas Wanner:
ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes. 8085 - Mathieu Scheltienne, Eric Larson, Arnaud Desvachez, Kyuhwa Lee:
MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices. 8088 - Jakob Skelmose, Lars Nielsen, Jennifer Anne Bartell, Charles Vesteghem, Martin Bøgsted, Rasmus Rask Kragh Jørgensen:
simulacrumWorkflowR: An R package for Streamlined Access and Analysis of the Simulacrum Cancer Dataset. 8120 - Tom Eulenfeld:
Sugar: A Python framework for bioinformatics. 8122 - Tom Aubier, Ivan M. Suarez-Castellanos, W. Apoutou N'Djin:
CoperniFUS: A flexible Python-based GUI for stereotaxic Focused UltraSound (FUS) experiment planning. 8128 - Marc Weitz, Shaheen Syed, Alexander Horsch:
PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python. 8136 - Joshua E. Meyers, Michael D. Schneider, Julia T. Ebert, Edward F. Schlafly, Travis Yeager, Alexx Perloff, Daniel Merl, Noah Lifset, Jason Bernstein, William A. Dawson, Nathan Golovich, Denvir Higgins, Peter McGill, Caleb Miller, Kerianne Pruett:
SSAPy - Space Situational Awareness for Python. 8147 - Nathalia Bianchini Esper, Reinder Vos de Wael, Larissa Hunt, Céline Vetter, Andrew Leroux, Vadim Zipunnikov, John Vito d'Antonio-Bertagnolli, Michelle Freund, Kathleen R. Merikangas, Michael P. Milham, Gregory Kiar, Alexandre Rosa Franco:
ActiSleep Tracker: a Python-based dashboard for adjusting automatic sleep predictions of actigraphy data. 8181 - Donisha Smith:
NeuroCAPs: A Python Package for Performing Co-Activation Patterns Analyses on Resting-State and Task-Based fMRI Data. 8196 - Ava Polzin:
spike: A Tool to Drizzle HST, JWST, and Roman PSFs for Improved Analyses. 8200 - Pablo Corcho-Caballero, Yago Ascasibar, Daniel Jiménez-López:
The Population Synthesis Toolkit (PST) Python Library. 8203 - Robert McGibbon, John C. Helly, Joop Schaye, Matthieu Schaller, Bert Vandenbroucke:
SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations. 8252 - Timon Merk, Antonio Brotons, Samed Rouven Vossberg, Richard M. Köhler, Thomas Samuel Binns, Ahmed Tarek Kamel Abdalfatah, Alessia Cavallo, Elisa Garulli, Ashley Walton, Jojo Vanhoecke, R. Mark Richardson, Wolf-Julian Neumann:
py_neuromodulation: Signal processing and decoding for neural electrophysiological recordings. 8258 - Shihui Feng, Baiyue He, Alec Kirkley:
HINA: A Learning Analytics Tool for Heterogenous Interaction Network Analysis in Python. 8299 - Taher Chegini:
HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS. 8301 - Hendrik Jung, Gerhard Hummer:
asyncmd: A python library to orchestrate complex molecular dynamics simulation campaigns on high performance computing systems. 8321 - He Zhang:
SDA: a symbolic differential algebra package in C++. 8330 - Anubhab Biswas, Lorenzo Nespoli, Dario Azzimonti, Lorenzo Zambon, Nicolò Rubattu, Giorgio Corani:
BayesReconPy: A Python package for forecast reconciliation. 8336 - Zhiang He:
ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access. 8341 - Pedro Vinícius A. B. de Venâncio, Lucas S. Batista:
PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data. 8348 - Benjamin Z. Rudski, Joseph Deering, Natalie Reznikov:
VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python. 8369 - Dion Häfner, Alexander Lavin:
Tesseract Core: Universal, autodiff-native software components for Simulation Intelligence. 8385 - Yuuichi Asahi, Thomas Padioleau, Paul Zehner, Julien Bigot, Damien Lebrun-Grandié:
kokkos-fft: A shared-memory FFT for the Kokkos ecosystem. 8391 - Filipe Jaeger Zabala, Giovanni Abrahão Salum:
voice: A Comprehensive R Package for Audio Analysis. 8420 - Martin A. Vonk:
SPEI: A Python package for calculating and visualizing drought indices. 8454 - Daniel A. J. Parsons, Benjamin Price:
Gene Fetch: A Python tool for sequence retrieval from GenBank across the tree of life. 8456 - Simon Provost, Alex Alves Freitas:
Scikit-Longitudinal: A Machine Learning Library for Longitudinal Classification in Python. 8481 - Daniel S. Stich, Joshua D. Hardesty, Nicholas T. Jordan, Samuel G. Roy, Timothy F. Sheehan, Shawn D. Snyder, Joseph D. Zydlewski:
anadrofish: Anadromous fish population responses to dams. 8564 - Jackson Barr, Diptaparna Biswas, Maxence Draguet, Philipp Gadow, Emil Haines, Osama Karkout, Dmitrii Kobylianskii, Wei Sheng Lai, Matthew Leigh, Nicholas Luongo, Ivan Oleksiyuk, Nikita Ivvan Pond, Sebastien Rettie, Andrius Vaitkus, Samuel Van Stroud, Johannes Wagner:
Salt: Multimodal Multitask Machine Learning for High Energy Physics. 7217 - Elise Lei, Paul Mollière:
easyCHEM: A Python package for calculating chemical equilibrium abundances in exoplanet atmospheres. 7712 - Aramy Truong, Maruti Kumar Mudunuru, Erin C. Rooney, Arunima Bhattacharjee, Tamas Varga, Md Lal Mamud, Xiaoliang He, Anil K. Battu, Satish Karra:
Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design. 8052 - Steffen Vogel, Niklas Eiling, Manuel Pitz, Alexandra Bach, Marija Stevic, Antonello Monti:
VILLASnode: An Open-Source Real-time Multi-protocol Gateway. 8401 - Andrew T. Landau:
Syd: A package for making interactive data visualizations in python. 8447 - Gaurav Atreya, Todd E. Steissberg, Patrick L. Ray:
NADI - Network Analysis and Data Integration with a Domain Specific Language. 8655 - Jan P. Hackstein, Eva Hackmann:
GREOPy: A Python package for solving the emitter-observer problem in general relativity. 8765 - Wilson Gregory, Kaze W. K. Wong, David W. Hogg, Soledad Villar:
ginjax: E(d)-Equivariant CNN for Tensor Images. 8129 - Randy Davila:
GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems. 8383 - Ather Abbas, Sara Iftikhar, Hylke E. Beck:
AquaFetch: A Unified Python Interface for Water Resource Dataset Acquisition and Harmonization. 8051 - Kyle J. Gillett:
SounderPy: An atmospheric sounding visualization and analysis tool for Python. 8087 - Jesko Wagner, Hugh Warden, Ava Khamseh, Sjoerd Viktor Beentjes:
scmorph: a Python package for analysing single-cell morphological profiles. 8324 - Jiawei Li, Thomas Asikis, Ioannis Fragkos, Lucas Böttcher:
idinn: A Python Package for Inventory-Dynamics Control with Neural Networks. 8508 - Thomas Samuel Binns, Franziska Pellegrini, Tin Jurhar, Tien D. Nguyen, Richard M. Köhler, Stefan Haufe:
PyBispectra: A toolbox for advanced electrophysiological signal processing using the bispectrum. 8504 - Peter William Hogg, Jerry Shijie Tong, Kurt Haas:
slap2-utils: Tools for Processing SLAP2 Data. 8054 - Giandomenico Lupo, Peter Wellens, Pedro Costa:
CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows. 8076 - Xue Quan, Antoine Levitt:
MatrixFuns.jl: Matrix functions in Julia. 8396 - Louis Moresi, John Mansour, Julian Giordani, Matt Knepley, Ben Knight, Juan Carlos Graciosa, Thyagarajulu Gollapalli, Neng Lu, Romain Beucher:
Underworld3: Mathematically Self-Describing Modelling in Python for Desktop, HPC and Cloud. 7831 - Olivier Labayle, Chris P. Ponting, Mark J. van der Laan, Ava Khamseh, Sjoerd Viktor Beentjes:
TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia. 8446 - Dustin F. Kapraun, Todd J. Zurlinden, Ryan D. Friese, Andrew J. Shapiro:
MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language. 8492 - Alexei Goumilevski, James Otterson:
Snowdrop: Python Package for DSGE Modeling. 8197 - Josephine Westermann, Joshua Chen:
smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX. 8505 - Florian Maurer, Nick Harder, Kim K. Miskiw, Manish Khanra:
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution. 8515
Volume 10, Number 113, September 2025
- Thomas Guillod, Charles R. Sullivan:
PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization. 6644 - Neil A. Butcher, James Tyrrell, David Smith:
CNearest: A C++ toolkit to use the nearest-neighbour method of regularised stokeslets algorithm to solve viscous flow problems. 7605 - Ruthvik Mannem, Adrian Swindle:
Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi. 7744 - Yanrong Song, Zijie Zhu, David Kane, Heidi Chen, Yuanchu Dang, Yang Lu, Kanishka Malik, Skylar Smith:
Credit Default Swaps with R. 7758 - Tomasz M. Stepkowski:
Vivid Volcano: Empowering Non-Bioinformaticians to Analyze Pre-Processed Omics Data. 8055 - Bartosz Prokop, Nikita S. Frolov, Lendert Gelens:
pyCLINE: A Python package using the CLINE method for discovery of nullcline structures in oscillatory dynamics. 8112 - Mike Du, Núria Mercadé-Besora, Marta Alcalde-Herraiz, Xihang Chen, Yuchen Guo, Kim López-Güell, Edward Burn, Martí Català:
omock: A R package for Mock Data Generation for the Observational Medical Outcomes Partnership Common Data Model. 8178 - Felix Wühler, Matthias Rädle:
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications. 8207 - Trevor Rife, Chaney Courtney, Prasad Kamath, Bryan J. Ellerbrock, Jesse A. Poland:
Coordinate: An Android application to organize samples into grids. 8263 - Robert Qiao:
substrateminer: A Python package to investigate protein substrate repertoires. 8266 - Jake W. Liu:
SpecialFunctions: A C# package of special functions for scientific computing with MATLAB-compatible API. 8516 - Prakash Prashanth, Nicolas Gomez-Vega, Sicheng He, Aditeya Shukla, Jonas J. Gonzalez, Diego Salgado Bobadilla, Kanghyun Lee, Prateek Ranjan, Sayed Shayan Zahid, James Abel, Mark Drela, Raymond Speth:
TASOPT.jl: A Julia package for conceptual commercial transport aircraft design. 8521 - Simone R. Hagey, Aaron C. Boley:
OrbDot: A Python package for studying the secular evolution of exoplanet orbits. 8550 - Emily Bourne, Virginie Grandgirard, Yuuichi Asahi, Julien Bigot, Peter Donnel, Alexander Hoffmann, Abdelhadi Kara, Philipp Krah, Baptiste Legouix, Etienne Malaboeuf, Yann Munschy, Kevin Obrejan, Thomas Padioleau, Matthieu Protais, Pauline Vidal:
Gyselalib++: A Portable C++ Library for Semi-Lagrangian Kinetic and Gyrokinetic Simulations. 8582 - Mehmet Hakan Satman:
OperationsResearchModels.jl: A Julia package for operations research models. 8592 - David R. Connell:
matlab-igraph: bringing igraph to MATLAB. 8622 - Benjamin Magill, Phil McMinn:
deflake.rs: Detect Flaky Tests in Rust Projects using Execution Data. 8757 - Charles Tapley Hoyt:
Improving reproducibility of cheminformatics workflows with chembl-downloader. 8844
Volume 10, Number 115, November 2025
- Congwei Song:
Pyrimidine: An algebra-inspired Programming framework for evolutionary algorithms. 6575 - Andrew Gibbs:
PathFinder: A Matlab/Octave package for oscillatory integration. 6902 - Kevin Godin-Dubois, Karine Miras, Anna V. Kononova:
AMaze: a benchmark generator for sighted maze-navigating agents. 7208 - Sam El-Kamand, Julian M. W. Quinn, Mark J. Cowley:
ggoncoplot: an R package for interactive visualisation of somatic mutation data from cancer patient cohorts. 7390
Volume 10, Number 116, December 2025
- Prashant K. Jha:
PeriDEM - High-fidelity modeling of granular media consisting of deformable complex-shaped particles. 7525 - Adam Pollack, James Doss-Gollin, Vivek Srikrishnan, Klaus Keller:
UNSAFE: An UNcertain Structure And Fragility Ensemble framework for property-level flood risk estimation. 7527 - Andrew K. Smith, Isaac Neuhaus:
Generating Visualizations Conversationally using Guided Autocomplete and LLMs. 7529 - Andy Nowacki, James Panton, Jamie Ward, Bob Myhill, Andrew M. Walker, James Wookey, J. Huw Davies:
terratools: A Python package to analyse TERRA mantle convection simulations. 7539 - Dag Pasquale Pasca, Diego Federico Margoni:
pyOMA2: A Python module for conducting operational modal analysis. 7656 - Brady Planden, Nicola E. Courtier, Martin Robinson, Agriya Khetarpal, Ferran Brosa Planella, David A. Howey:
PyBOP: A Python package for battery model optimisation and parameterisation. 7874 - Dorian Depriester, Régis Kubler:
Elasticipy: A Python package for linear elasticity and tensor analysis. 7940 - Anne D. Koelewijn, Marlies Nitschke, Eva Dorschky, Markus Gambietz, Alexander Weiss, Bjoern M. Eskofier, Antonie J. van den Bogert:
BioMAC-Sim-Toolbox: A MATLAB toolbox for biomechanical motion analysis and creation through simulation. 7945 - Christian Morland, Franziska Schier, Julia Tandetzki, Tomke Honkomp:
TiMBA (Timber market Model for policy-Based Analysis). 8034 - Felix Burkhardt, Bagus Tris Atmaja:
Nkululeko 1.0: A Python package to predict speaker characteristics with a high-level interface. 8049 - Ryan Senne, Zachary Loschinskey, James Fourie, Carson Loughridge, Brian D. DePasquale:
StateSpaceDynamics.jl: A Julia package for probabilistic state space models (SSMs). 8077 - Chun Li, Xuzhu Li, Yiliang Wang, Dewen Liu, Shuai He, Bo Huang, Haoran Cheng, Xiaokai Li, Wenzhuo Li, Mingze Tang, Zhengping Zhu, Yadong Zeng:
IAMReX: an adaptive framework for the multiphase flow and fluid-particle interaction problems. 8080 - Alfredo Hernandez-Inostroza, Erida Gjini:
MetaSpread: A cancer growth and metastatic spread simulation program in Python. 8092 - David Dahlbom, Hao Zhang, Cole Miles, Sam Quinn, Alin Niraula, Bhushan Thipe, Matthew Wilson, Sakib Matin, Het Mankad, Steven Hahn, Daniel Pajerowski, Steve Johnston, Zhentao Wang, Harry Lane, Ying Wai Li, Xiaojian Bai, Martin Mourigal, Cristian D. Batista, Kipton Barros:
Sunny.jl: A Julia Package for Spin Dynamics. 8138 - Romain Thomas, Evgenia Dammer:
STON: SofTware for petrOgraphic visualisatioN. 8144 - Valentin Munteanu, Vladimir Starostin, Alexander Hinderhofer, Alexander Gerlach, Dmitry Lapkin, Frank Schreiber:
reflectorch: a deep learning package for X-ray and neutron reflectometry. 8169 - Yasir Çatal, Georg Northoff:
IntrinsicTimescales.jl: A Julia package to estimate intrinsic (neural) timescales (INTs) from time-series data. 8261 - Louis Teitelbaum:
embedplyr: Tools for Working With Text Embeddings. 8262 - Lionel Garcia, Benjamin V. Rackham, Vatsal Panwar:
spotter: Hardware-Accelerated Forward Models of Pixelated Stars. 8305 - Aaron L. Feller, Claus O. Wilke:
p2smi: A toolkit enabling SMILES generation and property analysis for noncanonical and cyclized peptides. 8319 - Sebastian Fischer, John Zobolas, Raphael Sonabend, Marc Becker, Michel Lang, Martin Binder, Lennart Schneider, Lukas Burk, Patrick Schratz, Byron C. Jaeger, Stephen A. Lauer, Lorenz A. Kapsner, Maximilian Mücke, Zezhi Wang, Damir Pulatov, Keenan Ganz, Henri Funk, Liana Harutyunyan, Pierre Camilleri, Philipp Kopper, Andreas Bender, Baisu Zhou, Niko German, Lona Koers, Anna Nazarova, Bernd Bischl:
mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration. 8331 - Nerea Piñeiro-Juncal, Julen Astigarraga, Valentina Costa, Márcio Martins, Francisco Rodríguez-Sánchez:
BlueCarbon R package: Estimation of Organic Carbon Stocks and Sequestration Rates From Soil Core Data. 8333 - Tim Oberländer, Gaëtan Heidsieck, Thomas Hay, Winfried Kurth:
GroLink: A general application programming interface for the plant-modeling platform GroIMP. 8343 - Hubert J. Naguszewski, Livia B. Pártay, David Quigley, Christopher D. Woodgate:
BraWl: Simulating the thermodynamics and phase stability of multicomponent alloys using conventional and enhanced sampling techniques. 8346 - Jed Homer:
SBGM: Score-Based Generative Models in JAX. 8347 - Di Sheng, Xin Zhao, Abigail Snyder, Stephanie Morris, Chris R. Vernon:
HELPS: an R package to project future Heat Effects on Labor Productivity by Sector. 8415 - Air M. Forbes, Jennifer L. Beverly:
fireexposuR: An R package for computing and visualizing wildfire exposure. 8479 - Valentin Niess, Kinson Vernet, Luca Terray:
Calzone: A Geant4 Python wrapper for the simulation of outdoor particle detectors. 8485 - Constantin Völter, Vladimir Starostin, Mikhail Romodin, Ekaterina Kneschaurek, Dmitry Lapkin, Alexander Hinderhofer, Frank Schreiber:
mlgidGUI - an annotation program for 2D scattering data. 8499 - Marius J. Müller, Sangam Chatterjee, Florian Dobener:
pyElli: An open source ellipsometry analysis tool for FAIR data. 8503 - Colin Bousige:
OPTIMEO: Bayesian Optimization Web App for Process Tuning, Modeling, and Orchestration. 8510 - Carter Lee Rhea, Pieter van Dokkum, Steven R. Janssens, Imad Pasha, Roberto Abraham, William P. Bowman, Deborah Lokhorst, Seery Chen:
dfreproject: A Python package for astronomical reprojection. 8525 - Owen Melia, Daniel Fortunato, Jeremy G. Hoskins, Rebecca Willett:
jaxhps: An elliptic PDE solver built with machine learning in mind. 8549 - Tyler Clark Sutterley, Susan L. Howard, Laurie Padman, Matthew R. Siegfried:
pyTMD: Python-based tidal prediction software. 8566 - Tomonori Hoshi, Erina Ishigaki, Satoshi Kaneko:
An R Package for Acquiring and Processing Notifiable Infectious Diseases Dataset from the Japan Institute for Health Security. 8577 - Brandon Runnels, Vinamra Agrawal, Maycon Meier:
The Alamo multiphysics solver for phase field simulations with strong-form mechanics and block structured adaptive mesh refinement. 8581 - Matthew M. Graham, Samuel Livingstone:
rmcmc: Robust Markov chain Monte Carlo methods in R. 8594 - Damien Delforge, Alice Alonso, Olivier de Viron, Marnik Vanclooster, Niko Speybroeck:
SSALib: a Python Library for Time Series Decomposition using Singular Spectrum Analysis. 8600 - Robert Reischke:
pylevin: efficient numerical integration of integrals containing up to three Bessel functions. 8618 - Adam Santorelli, Freymon Perez, Reinder Vos de Wael, Florian Rupprecht, John Vito d'Antonio-Bertagnolli, Alexandre R. Franco, Gregory Kiar:
wristpy: Fast, User-Friendly Python Processing of Wrist-worn Accelerometer Data. 8637 - Max Hinne:
Bamojax: Bayesian Modelling with JAX. 8642 - Kouao Laurent Kouadio:
k-diagram: Rethinking Forecasting Uncertainty via Polar-based Visualization. 8661 - Xavier Olive, Junzi Sun, Xiaogang Huang, Michel Khalaf:
tangram, an open platform for modular, real-time air traffic management research. 8662 - Thomas Corpetti, Pierrick Matelot, Augustin de la Brosse, Candide Lissak:
Rastereasy: A Python package for easy manipulation of remote sensing images. 8666 - Jean-Baptiste Filippi, Roberta Baggio, Ronan Paugam, Frédéric Bosseur, Antonio Leblanc, Alberto Alonso-Pinar:
ForeFire: A Modular, Scriptable C++ Simulation Engine and Library for Wildland-Fire Spread. 8680 - Bryce Irving, Guilherme P. Castelão, Colin Beyers, James Clemson, Jackson Krieger, Gwendal Marechal, Nicholas Pizzo, Ana B. M. Villas Boas:
Mantaray: A Rust Package for Ray Tracing Ocean Surface Gravity Waves. 8691 - Daniel Rud, Juan Pablo Lewinger:
fgwqsr: An R package for Frequentist Grouped Weighted Quantile Sum Regression. 8692 - Daniel Balzer, Ivan Kassal:
dKMC: Delocalised kinetic Monte Carlo for simulating fundamental transport processes involving partially delocalised carriers in disordered materials. 8722 - Linus Leo Stöckli, Arnaud Demion, Nicolas Thomas:
THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool. 8754 - Chad B. Hovey, Michael R. Buche:
automesh: Automatic mesh generation in Rust. 8768 - Patrick Kopper, Marcel Blind, Anna Schwarz, Marius Kurz, Felix Rodach, Stephen M. Copplestone, Andrea D. Beck:
PyHOPE: A Python Toolkit for Three-Dimensional Unstructured High-Order Meshes. 8769 - Ziv Meri:
C4DYNAMICS: The Python framework for state-space modeling and algorithm development. 8776 - Kapil Duwadi, Bryan Palmintier, Aadil Latif, Kwami Senam Sedzro, Sherin Ann Abraham:
ERAD: A Graph-Based Tool for Energy Resilience Analysis of Electric Distribution Systems. 8782 - Damian W. I. Rouson, Dan Bonachea, Brad Richardson, Jordan A. Welsman, Jeremiah Bailey, Ethan D. Gutmann, David J. Torres, Katherine Rasmussen, Baboucarr Dibba, Yunhao Zhang, Kareem Weaver, Zhe Bai, Tan Nguyen:
Fiats: Functional inference and training for surrogates. 8785 - Christopher Marais, Eric Kuo, Jiri Hulcr, Raquel Dias:
IBBI: A Python package for the detection and classification of bark and ambrosia beetles. 8796 - Michael H. Goerz, Sebastián C. Carrasco, Alastair Marshall, Vladimir S. Malinovsky:
GRAPE.jl: Gradient Ascent Pulse Engineering in Julia. 8813 - Tomer Meir, Rom Gutman, Malka Gorfine:
PyDTS: A Python Package for Discrete-Time Survival Analysis with Competing Risks and Optional Penalization. 8815 - Poojan Agrawal, Katelyn Breivik, Jarrod Hurley, Carl Rodriguez, Simon Stevenson, Alex Kemp, Dorottya Szécsi:
METISSE: METhod of Interpolation for Single Star Evolution. 8817 - Fabian Zills:
molify: Molecular Structure Interface. 8829 - AmirHosein Rostami, Sepand Haghighi, Sadra Sabouri, Alireza Zolanvari:
PyMilo: A Python Library for ML I/O. 8858 - Varun Ratnakar, Deborah Khider:
PyLiPD: A python package for the manipulation of paleoclimate datasets. 8861 - Rohit Chowdhury, Nipun Arora, Ashish Pathak:
PANKH: An unsteady potential flow solver for hovering airfoils. 8865 - Maxim Moraru, Weiyi Xia, Zhuo Ye, Feng Zhang, Yongxin Yao, Ying Wai Li, Cai-Zhuang Wang:
exa-AMD: A Scalable Workflow for Accelerating AI-Assisted Materials Discovery and Design. 8879 - Joseph Farrington, Wai Keong Wong, Kezhi Li, Martin Utley:
MDPax: GPU-accelerated MDP solvers in Python with JAX. 8897 - Julián Tachella, Matthieu Terris, Samuel Hurault, Andrew Wang, Leo Davy, Jérémy Scanvic, Victor Sechaud, Romain Vo, Thomas Moreau, Thomas Davies, Dongdong Chen, Nils Laurent, Brayan Monroy, Jonathan Dong, Zhiyuan Hu, Minh-Hai Nguyen, Florian Sarron, Pierre Weiss, Paul Escande, Mathurin Massias, Thibaut Modrzyk, Brett Levac, Tobías I. Liaudat, Maxime Song, Johannes Hertrich, Sebastian Neumayer, Georg Schramm:
DeepInverse: A Python package for solving imaging inverse problems with deep learning. 8923 - C. Levi Petix, Mayukh Kundu, Michael P. Howard:
lammpsio: Transparent and reproducible handling of LAMMPS particle data in Python. 8962 - Matthew S. Caudill:
Tabbed: A Python package for reading variably structured text files at scale. 8964 - Martin Hunt, Zamin Iqbal:
Ziplign: a simple-to-use interactive tool to compare bacterial genomes. 9004 - Michael L. Mann:
xr_fresh: Automated Time Series Feature Extraction for Remote Sensing and Gridded Data. 9009 - Neil Scheidwasser, Ayush Nag, Matthew J. Penn, Anthony MV Jakob, Frederik Mølkjær Andersen, Mark P. Khurana, Landung Setiawan, David A. Duchêne, Samir Bhatt:
phylo2vec: a library for vector-based phylogenetic tree manipulation. 9040 - Sebastian Gerhard Mutz:
FSML - A Modern Fortran Statistics and Machine Learning Library. 9058 - Kohei Watanabe:
Scikit-Topt: A Python Library for Algorithm Development in Topology Optimization. 9092 - Jon Nordby:
emlearn-micropython: Machine Learning and Digital Signal Processing for MicroPython. 9093 - Thomas Padioleau, Julien Bigot, Emily Bourne, Baptiste Legouix:
DDC: The Discrete Domain Computation library. 9122 - Aleksandr Berezutskii:
mdopt: A code-agnostic tensor-network decoder for quantum error-correcting codes. 9125 - Luis M. b. Varona:
MatrixBandwidth.jl: Fast algorithms for matrix bandwidth minimization and recognition. 9136 - Adrian Danzglock, Vamsi Krishna Origanti, Frank Kirchner:
MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control. 9140 - Sofian Audry, Thomas Ouellet Fredericks:
Plaquette: An Object-Oriented Framework for Embedded Signal Processing in Interactive Media. 9144 - Marijn van Vliet, Stefan Appelhoff, Takao Shimizu, Egor Eremin, Annika Hultén, Yuanfang Zhao, Richard Höchenberger:
MNE-RSA: Representational Similarity Analysis on EEG, MEG and fMRI data. 9148 - Philip G. Brodrick, Francisco Ochoa, Gregory S. Okin, Vatsal A. Jhalani, Winston Olson-Duvall, Sarah R. Lundeen, David R. Thompson, Robert O. Green:
SpectralUnmixing: A general Julia package for unmixing spectroscopy data. 9149 - Shaked Zychlinski:
dython: A Set of Analysis and Visualization Tools for Data and Variables in Python. 9174 - Hauke Schulz, Milan Klöwer, Aaron Spring:
xbitinfo: Compressing geospatial data based on information theory. 9178 - Zella King, Jonathan Gillham, Martin Utley, Sara Lundell, Matt Graham, Sonya Crowe:
patientflow: a Python package for real-time prediction of hospital bed demand from current and incoming patients. 9187 - Renaud Van Damme, Arnaud Vanbelle, Tomas Klingström, Juliette Hayer, Amrei Binzer-Panchal, Erik Bongcam-Rudloff:
PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality. 9188 - Hugo Lecomte, Sebastien Fourest, Alejandro Blazquez:
Lenapy: Enhancing xarray for multidimensional geophysical data analysis. 9189 - Josep Llobet Lladó, Núria Garriga-Alonso, Amanda Muñoz-Juan, Anna Laromaine:
WorMe: A user-oriented software for Caenorhabditis elegans length determination. 9221 - Germán Martín Heim:
GlobalSearch-rs: A multistart framework for global optimization written in Rust. 9234 - Adam R. Jensen, Ioannis Sifnaios, Kevin S. Anderson, Echedey Luis:
solposx: A Python package for determining solar position and atmospheric refraction. 9239 - Matthew L. Daggitt, Guillaume Allais, James McKinna, Andreas Abel, Van Doorn, Nathan, James Wood, Ulf Norell, Donnacha Oisín Kidney, Sergei Meshveliani, Sandro Stucki, Jacques Carette, Alex Rice, Jason Z. s. Hu, Li-yao Xia, Shu-Hung You, Reed Mullanix, Wen Kokke:
The Agda standard library: version 2.0. 9241 - Kostas Valeckas, Johan Peter Uldall Fynbo, Jens-Kristian Krogager, Kasper Elm Heintz:
PyLongslit: a simple manual Python pipeline for processing of astronomical long-slit spectra recorded with CCD detectors. 9264 - April Herwig, Oliver Junge, Michael Dellnitz:
GAIO.jl - A concise Julia package for the global analysis of dynamical systems. 9266 - Fabrizio Musacchio, Sophie Crux, Felix Nebeling, Nala Gockel, Falko Fuhrmann, Martin Fuhrmann:
MotilA - A Python pipeline for the analysis of microglial fine process motility in 3D time-lapse multiphoton microscopy data. 9267 - Sebastian Krahmer, Sasan Jacob Rasti, Laura Fiedler, Maximilian Schmidt:
PowerFactory-Tools: A Python Package to Facilitate the Control of DIgSILENT PowerFactory. 9281 - Hui Ling Wong, Rafael Palacios, Edward Gryspeerdt:
rojak: A Python library and tool for aviation turbulence diagnostics. 9282 - Ahmed Bargheet:
AssumpSure: a user‑friendly R Shiny package for automated validation of statistical assumptions and appropriate test selection. 9286 - Salar Nouri, Kaidi Shao, Shervin Safavi:
TranCIT: Transient Causal Interaction Toolbox. 9302 - Zhirui Deng, Theresa A. Koleck, Chen Zhang, Peter D. R. Higgins, Caitlin N. Dreisbach:
AOUSDOHtools: An R Package for Social Determinants of Health Survey data in the All of Us Research Program. 9306 - Daniel N. Blaschke:
PyDislocDyn: A Python code for calculating dislocation drag and other crystal properties. 9309 - Joshua Lampert, Collin Wittenstein, Hendrik Ranocha:
DispersiveShallowWater.jl: A Julia library of structure-preserving numerical methods for dispersive wave equations. 9361 - Corey Spohn, Sarah Steiger, Alex R. Howe:
yieldplotlib: A unified library for exoplanet yield code visualizations. 9401 - Brian C. Ferrari:
YetAnotherSimulationSuite.jl: An Atomic Simulation Suite in Julia. 9480 - Mathis Gerdes, Miranda C. N. Cheng:
Bijx: Bijections and normalizing flows with JAX/NNX. 9521 - Christopher Añorve:
GALFITools: A Python library to enhance GALFIT usage in galaxy image modeling. 9534
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