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ORCIDNeuroinformatics, Volume 19
Volume 19, Number 1, January 2021
- Wieslaw L. Nowinski
:
Evolution of Human Brain Atlases in Terms of Content, Applications, Functionality, and Availability. 1-22 - Xinbo Wang, Qing Wang, Peiwen Zhang, Shufang Qian, Shiyu Liu, Dong-Qiang Liu:
Reducing Inter-Site Variability for Fluctuation Amplitude Metrics in Multisite Resting State BOLD-fMRI Data. 23-38 - Jeong Hwan Kook, Kelly A. Vaughn, Dana M. DeMaster, Linda Ewing-Cobbs, Marina Vannucci:
BVAR-Connect: A Variational Bayes Approach to Multi-Subject Vector Autoregressive Models for Inference on Brain Connectivity Networks. 39-56 - Junhao Wen, Jorge Samper-González, Simona Bottani, Alexandre Routier, Ninon Burgos, Thomas Jacquemont, Sabrina Fontanella, Stanley Durrleman, Stéphane Epelbaum, Anne Bertrand, Olivier Colliot:
Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer's Disease. 57-78 - Bingye Lei, Fengchun Wu, Jing Zhou, Dongsheng Xiong, Kaixi Wang, Lingyin Kong, Pengfei Ke, Jun Chen, Yuping Ning, Xiaobo Li, Zhiming Xiang, Kai Wu:
NEURO-LEARN: a Solution for Collaborative Pattern Analysis of Neuroimaging Data. 79-91 - Sylvain Chevallier, Emmanuel K. Kalunga, Quentin Barthélemy, Éric Monacelli:
Review of Riemannian Distances and Divergences, Applied to SSVEP-based BCI. 93-106 - Krzysztof Rykaczewski, Jan Nikadon, Wlodzislaw Duch, Tomasz Piotrowski:
supFunSim: Spatial Filtering Toolbox for EEG. 107-125 - Andrew Beers, James M. Brown, Ken Chang, Katharina Hoebel, Jay B. Patel, K. Ina Ly, Sara M. Tolaney, Priscilla K. Brastianos, Bruce R. Rosen, Elizabeth R. Gerstner, Jayashree Kalpathy-Cramer:
DeepNeuro: an open-source deep learning toolbox for neuroimaging. 127-140 - Jasper Wouters, Fabian Kloosterman, Alexander Bertrand:
SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance. 141-158 - Sebastian R. van der Voort, Marion Smits, Stefan Klein:
DeepDicomSort: An Automatic Sorting Algorithm for Brain Magnetic Resonance Imaging Data. 159-184 - Alessio Paolo Buccino, Gaute T. Einevoll:
MEArec: A Fast and Customizable Testbench Simulator for Ground-truth Extracellular Spiking Activity. 185-204
Volume 19, Number 2, April 2021
- Ittai Shamir, Yaniv Assaf:
An MRI-Based, Data-Driven Model of Cortical Laminar Connectivity. 205-218 - Xuyu Cao, Chen Chen, Lixia Tian:
Supervised Multidimensional Scaling and its Application in MRI-Based Individual Age Predictions. 219-231 - Minjeong Kim, Chenggang Yan, Defu Yang, Peipeng Liang, Daniel I. Kaufer, Guorong Wu:
Constructing Connectome Atlas by Graph Laplacian Learning. 233-249 - Roberto Guarnieri, Mingqi Zhao, Gaia Amaranta Taberna, Marco Ganzetti, Stephan P. Swinnen, Dante Mantini:
RT-NET: real-time reconstruction of neural activity using high-density electroencephalography. 251-266 - Hong Ni, Zhao Feng, Yue Guan, Xueyan Jia, Wu Chen, Tao Jiang, Qiuyuan Zhong, Jing Yuan, Miao Ren, Xiangning Li, Hui Gong, Qingming Luo, Anan Li:
DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks. 267-284 - Lu Zhao, Ishaan Batta, William Matloff, Caroline O'Driscoll, Samuel Hobel, Arthur W. Toga:
Neuroimaging PheWAS (Phenome-Wide Association Study): A Free Cloud-Computing Platform for Big-Data, Brain-Wide Imaging Association Studies. 285-303 - Hang Zhou, Shiwei Li, Anan Li, Qing Huang, Feng Xiong, Ning Li, Jiacheng Han, Hongtao Kang, Yijun Chen, Yun Li, Huimin Lin, Yu-Hui Zhang, Xiaohua Lv, Xiuli Liu, Hui Gong, Qingming Luo, Shaoqun Zeng, Tingwei Quan:
GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population. 305-317 - Gabriela J. Jurkiewicz, Mark J. Hunt, Jaroslaw Zygierewicz:
Addressing Pitfalls in Phase-Amplitude Coupling Analysis with an Extended Modulation Index Toolbox. 319-345 - Andrei Irimia:
Cross-Sectional Volumes and Trajectories of the Human Brain, Gray Matter, White Matter and Cerebrospinal Fluid in 9473 Typically Aging Adults. 347-366 - Ryan P. Cabeen, Arthur W. Toga, David H. Laidlaw:
Tractography Processing with the Sparse Closest Point Transform. 367-378 - Baris Kanber, Jasper M. Morrow, Uros Klickovic, Stephen J. Wastling, Sachit Shah, Pietro Fratta, Amy R. McDowell, Matt G. Hall, Chris A. Clark, Francesco Muntoni, Mary M. Reilly, Michael G. Hanna, Daniel C. Alexander, Tarek A. Yousry, John S. Thornton:
Musclesense: a Trained, Artificial Neural Network for the Anatomical Segmentation of Lower Limb Magnetic Resonance Images in Neuromuscular Diseases. 379-383
Volume 19, Number 3, July 2021
- Holger Mohr, Hannes Ruge:
Fast Estimation of L1-Regularized Linear Models in the Mass-Univariate Setting. 385-392 - Hua Zhang, Jiajie Mo, Han Jiang, Zhuyun Li, Wenhan Hu, Chao Zhang, Yao Wang, Xiu Wang, Chang Liu, Baotian Zhao, Jianguo Zhang, Kai Zhang:
Deep Learning Model for the Automated Detection and Histopathological Prediction of Meningioma. 393-402 - Matthew F. Sharrock, W. Andrew Mould, Hasan Ali, Meghan Hildreth, Issam A. Awad, Daniel F. Hanley, John Muschelli:
3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials. 403-415 - Muhammad Yousefnezhad, Jeffrey Sawalha, Alessandro Selvitella, Daoqiang Zhang:
Deep Representational Similarity Learning for Analyzing Neural Signatures in Task-based fMRI Dataset. 417-431 - Johanna Perens, Casper Gravesen Salinas, Jacob Lercke Skytte, Urmas Roostalu, Anders Bjorholm Dahl, Tim B. Dyrby, Franziska Wichern, Pernille Barkholt, Niels Vrang, Jacob Jelsing, Jacob Hecksher-Sørensen:
An Optimized Mouse Brain Atlas for Automated Mapping and Quantification of Neuronal Activity Using iDISCO+ and Light Sheet Fluorescence Microscopy. 433-446 - Colin B. Hansen, Qi Yang, Ilwoo Lyu, Francois Rheault, Cailey I. Kerley, Bramsh Qamar Chandio, Shreyas Fadnavis, Owen A. Williams, Andrea T. Shafer, Susan M. Resnick, David H. Zald, Laurie E. Cutting, Warren D. Taylor, Brian D. Boyd, Eleftherios Garyfallidis, Adam W. Anderson, Maxime Descoteaux, Bennett A. Landman, Kurt G. Schilling:
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography. 447-460 - Jan Sosulski, Jan-Philipp Kemmer, Michael Tangermann:
Improving Covariance Matrices Derived from Tiny Training Datasets for the Classification of Event-Related Potentials with Linear Discriminant Analysis. 461-476 - José Bernal, Sergi Valverde, Kaisar Kushibar, Mariano Cabezas, Arnau Oliver, Xavier Lladó:
Generating Longitudinal Atrophy Evaluation Datasets on Brain Magnetic Resonance Images Using Convolutional Neural Networks and Segmentation Priors. 477-492 - Espen Hagen, Anna R. Chambers, Gaute T. Einevoll, Klas H. Pettersen, Rune Enger, Alexander J. Stasik:
RippleNet: a Recurrent Neural Network for Sharp Wave Ripple (SPW-R) Detection. 493-514 - Rong Chen:
Causal Network Inference for Neural Ensemble Activity. 515-527 - Zhu-Qing Gong, Peng Gao, Chao Jiang, Xiu-Xia Xing, Hao-Ming Dong, Tonya White, F. Xavier Castellanos, Hai-Fang Li, Xi-Nian Zuo:
DREAM. 529-545 - Mohamed Amine Boudiaf, Moncef Benkherrat, Djemil Messadeg, Mahmoud Boudiaf:
Automatic Denoising of Single-Trial Event-Related Potentials. 547-550
Volume 19, Number 4, October 2021
- Giorgio A. Ascoli, David N. Kennedy, Erik De Schutter:
Farewell, Neuroinformatics! 551-552 - Harshvardhan Gazula, Bharath Holla, Zuo Zhang, Jiayuan Xu, Eric Verner, Ross Kelly, Sanjeev Jain, Rose Dawn Bharath, Gareth J. Barker, Debasish Basu, Amit Chakrabarti, Kartik Kalyanram, Kalyanaraman Kumaran, Rajkumar Lenin Singh, Rebecca Kuriyan, Pratima Murthy, Vivek Benega, Sergey M. Plis, Anand D. Sarwate, Jessica A. Turner, Gunter Schumann, Vince D. Calhoun:
Decentralized Multisite VBM Analysis During Adolescence Shows Structural Changes Linked to Age, Body Mass Index, and Smoking: a COINSTAC Analysis. 553-566 - Joaquim Massana, Òscar Raya, Jaume Gauchola, Beatriz López:
Signaleeg. 567-583 - Gaia Amaranta Taberna, Jessica Samogin, Dante Mantini:
Automated Head Tissue Modelling Based on Structural Magnetic Resonance Images for Electroencephalographic Source Reconstruction. 585-596 - Emmanuel E. Ntiri, Melissa F. Holmes, Parisa Mojiri Forooshani, Joel Ramirez, Fuqiang Gao, Miracle Ozzoude, Sabrina Adamo, Christopher J. M. Scott, Dar Dowlatshahi, Jane M. Lawrence-Dewar, Donna Kwan, Anthony E. Lang, Sean Symons, Robert Bartha, Stephen C. Strother, Jean-Claude Tardif, Mario Masellis, Richard H. Swartz, Alan R. Moody, Sandra E. Black, Maged Goubran:
Improved Segmentation of the Intracranial and Ventricular Volumes in Populations with Cerebrovascular Lesions and Atrophy Using 3D CNNs. 597-618 - Victor Nozais, Philippe Boutinaud, Violaine Verrecchia, Marie-Fateye Gueye, Pierre-Yves Hervé, Christophe Tzourio, Bernard Mazoyer, Marc Joliot:
Deep Learning-based Classification of Resting-state fMRI Independent-component Analysis. 619-637 - Nicolas Roehri, Samuel Medina Villalon, Aude Jegou, Bruno Colombet, Bernard Giusiano, Aurélie Ponz, Fabrice Bartolomei, Christian-George Bénar:
Transfer, Collection and Organisation of Electrophysiological and Imaging Data for Multicentre Studies. 639-647 - Nestor Timonidis, Alberto Llera, Paul H. E. Tiesinga:
Uncovering Statistical Links Between Gene Expression and Structural Connectivity Patterns in the Mouse Brain. 649-667 - Chen-zhi Su, Kuan-Ting Chou, Hsuan-Pei Huang, Chiau-Jou Li, Ching-Che Charng, Chung-Chuan Lo, Daw-Wei Wang:
Identification of Neuronal Polarity by Node-Based Machine Learning. 669-684 - Johannes Hjorth, Jeanette Hellgren Kotaleski, Alexander K. Kozlov:
Predicting Synaptic Connectivity for Large-Scale Microcircuit Simulations Using Snudda. 685-701 - Carolee Nguyen, Katherine L. Thompson-Peer:
Comparing Automated Morphology Quantification Software on Dendrites of Uninjured and Injured Drosophila Neurons. 703-717 - Gorana Mijatovic, Tatjana Loncar-Turukalo, Nebojsa Bozanic, Nina Milosavljevic, Riccardo Storchi, Luca Faes:
A Measure of Concurrent Neural Firing Activity Based on Mutual Information. 719-735 - Michiel Van Dyck, Rajiv K. Mishra, Francisco Pestana, Peter Verstraelen, Hilde Lavreysen, Juan D. Pita-Almenar, Nachiket D. Kashikar, Winnok H. De Vos:
High-throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures. 737-750
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