Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Ralf Bundschuh
@article{DBLP:journals/bioinformatics/ShatoffB22,
author = {Elan Shatoff and
Ralf Bundschuh},
title = {dsRBPBind: modeling the effect of {RNA} secondary structure on double-stranded
RNA-protein binding},
journal = {Bioinform.},
volume = {38},
number = {3},
pages = {687--693},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab724},
doi = {10.1093/BIOINFORMATICS/BTAB724},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShatoffB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ShatoffB20,
author = {Elan Shatoff and
Ralf Bundschuh},
title = {Single nucleotide polymorphisms affect RNA-protein interactions at
a distance through modulation of {RNA} secondary structures},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {5},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007852},
doi = {10.1371/JOURNAL.PCBI.1007852},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ShatoffB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoBFB19,
author = {Dengke Zhao and
William D. Baez and
Kurt Fredrick and
Ralf Bundschuh},
title = {RiboProP: a probabilistic ribosome positioning algorithm for ribosome
profiling},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1486--1493},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty854},
doi = {10.1093/BIOINFORMATICS/BTY854},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoBFB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorelandOB19,
author = {Blythe S. Moreland and
Kenji M. Oman and
Ralf Bundschuh},
title = {A model of pulldown alignments from SssI-treated {DNA} improves {DNA}
methylation prediction},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {431:1--431:15},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3011-2},
doi = {10.1186/S12859-019-3011-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MorelandOB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AyyalaFGMBYL16,
author = {Deepak Nag Ayyala and
David E. Frankhouser and
Javkhlan{-}Ochir Ganbat and
Guido Marcucci and
Ralf Bundschuh and
Pearlly Yan and
Shili Lin},
title = {Statistical methods for detecting differentially methylated regions
based on MethylCap-seq data},
journal = {Briefings Bioinform.},
volume = {17},
number = {6},
pages = {926--937},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv089},
doi = {10.1093/BIB/BBV089},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AyyalaFGMBYL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionetics/Bundschuh15,
author = {Ralf Bundschuh},
editor = {Junichi Suzuki and
Tadashi Nakano and
Henry Hess},
title = {The search for the determinants of insertional {RNA} editing in Physarum
polycephalum mitochondrial RNAs},
booktitle = {{BICT} 2015, Proceedings of the 9th {EAI} International Conference
on Bio-inspired Information and Communications Technologies (formerly
BIONETICS), New York City, United States, December 3-5, 2015},
pages = {585--586},
publisher = {{ICST/ACM}},
year = {2015},
url = {http://dl.acm.org/citation.cfm?id=2954757},
timestamp = {Fri, 03 Feb 2017 18:36:35 +0100},
biburl = {https://dblp.org/rec/conf/bionetics/Bundschuh15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrankhouserMBPZGCBLMYB14,
author = {David E. Frankhouser and
Mark Murphy and
James S. Blachly and
Jincheol Park and
Mike W. Zoller and
Javkhlan{-}Ochir Ganbat and
John Curfman and
John C. Byrd and
Shili Lin and
Guido Marcucci and
Pearlly Yan and
Ralf Bundschuh},
title = {PrEMeR-CG: inferring nucleotide level {DNA} methylation values from
MethylCap-seq data},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3567--3574},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu583},
doi = {10.1093/BIOINFORMATICS/BTU583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrankhouserMBPZGCBLMYB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChenFB12,
author = {Cai Chen and
David Frankhouser and
Ralf Bundschuh},
title = {Comparison of Insertional {RNA} Editing in \emph{Myxomycetes}},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {2},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002400},
doi = {10.1371/JOURNAL.PCBI.1002400},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChenFB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCLB11,
author = {Yuheng Li and
Nicholas Chia and
Mario Lauria and
Ralf Bundschuh},
title = {A performance enhanced {PSI-BLAST} based on hybrid alignment},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {31--37},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq621},
doi = {10.1093/BIOINFORMATICS/BTQ621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiCLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/RodriguezTFTMKPBSCBMYB11,
author = {Benjamin Rodriguez and
Hok{-}Hei Tam and
David Frankhouser and
Michael Trimarchi and
Mark Murphy and
Chris Kuo and
Deval Parikh and
Bryan Ball and
Sebastian Schwind and
John Curfman and
William Blum and
Guido Marcucci and
Pearlly Yan and
Ralf Bundschuh},
title = {A scalable, flexible workflow for MethylCap-seq data analysis},
booktitle = {2011 {IEEE} International Workshop on Genomic Signal Processing and
Statistics, GENSiPS 2011, San Antonio, TX, USA, December 4-6, 2011},
pages = {1--4},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/GENSiPS.2011.6169426},
doi = {10.1109/GENSIPS.2011.6169426},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/gensips/RodriguezTFTMKPBSCBMYB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FortiesB10,
author = {Robert A. Forties and
Ralf Bundschuh},
title = {Modeling the interplay of single-stranded binding proteins and nucleic
acid secondary structure},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {61--67},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp627},
doi = {10.1093/BIOINFORMATICS/BTP627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FortiesB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeCB09,
author = {Marianne M. Lee and
Michael K. Chan and
Ralf Bundschuh},
title = {{SIB-BLAST:} a web server for improved delineation of true and false
positives in {PSI-BLAST} searches},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {53--56},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp301},
doi = {10.1093/NAR/GKP301},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeCB08,
author = {Marianne M. Lee and
Michael K. Chan and
Ralf Bundschuh},
title = {Simple is beautiful: a straightforward approach to improve the delineation
of true and false positives in {PSI-BLAST} searches},
journal = {Bioinform.},
volume = {24},
number = {11},
pages = {1339--1343},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn130},
doi = {10.1093/BIOINFORMATICS/BTN130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeCB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeargieLCLGB08,
author = {Christina Beargie and
Tsunglin Liu and
Mark Corriveau and
Ha Youn Lee and
Jonatha Gott and
Ralf Bundschuh},
title = {Genome annotation in the presence of insertional {RNA} editing},
journal = {Bioinform.},
volume = {24},
number = {22},
pages = {2571--2578},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn487},
doi = {10.1093/BIOINFORMATICS/BTN487},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeargieLCLGB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HabibJBJ07,
author = {Farhat Habib and
Andrew D. Johnson and
Ralf Bundschuh and
Daniel Janies},
title = {Large scale genotype-phenotype correlation analysis based on phylogenetic
trees},
journal = {Bioinform.},
volume = {23},
number = {7},
pages = {785--788},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm003},
doi = {10.1093/BIOINFORMATICS/BTM003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HabibJBJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MesserBVA07,
author = {Philipp W. Messer and
Ralf Bundschuh and
Martin Vingron and
Peter F. Arndt},
title = {Effects of Long-Range Correlations in {DNA} on Sequence Alignment
Score Statistics},
journal = {J. Comput. Biol.},
volume = {14},
number = {5},
pages = {655--668},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.R008},
doi = {10.1089/CMB.2007.R008},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MesserBVA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChiaB06,
author = {Nicholas Chia and
Ralf Bundschuh},
title = {A Practical Approach to Significance Assessment in Alignment with
Gaps},
journal = {J. Comput. Biol.},
volume = {13},
number = {2},
pages = {429--441},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.429},
doi = {10.1089/CMB.2006.13.429},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChiaB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MesserBVA06,
author = {Philipp W. Messer and
Ralf Bundschuh and
Martin Vingron and
Peter F. Arndt},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Alignment Statistics for Long-Range Correlated Genomic Sequences},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {426--440},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_36},
doi = {10.1007/11732990\_36},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MesserBVA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/LiLB05,
author = {Yuheng Li and
Mario Lauria and
Ralf Bundschuh},
title = {Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence
Database Searches},
booktitle = {Fifth {IEEE} International Symposium on Bioinformatic and Bioengineering
{(BIBE} 2005), 19-21 October 2005, Minneapolis, MN, {USA}},
pages = {153--160},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/BIBE.2005.54},
doi = {10.1109/BIBE.2005.54},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/LiLB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiaB05,
author = {Nicholas Chia and
Ralf Bundschuh},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A Practical Approach to Significance Assessment in Alignment with
Gaps},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {474--488},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_36},
doi = {10.1007/11415770\_36},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiaB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bundschuh04,
author = {Ralf Bundschuh},
title = {Computational prediction of {RNA} editing sites},
journal = {Bioinform.},
volume = {20},
number = {17},
pages = {3214--3220},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth387},
doi = {10.1093/BIOINFORMATICS/BTH387},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bundschuh04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/LiLB04,
author = {Yuheng Li and
Mario Lauria and
Ralf Bundschuh},
title = {Using hybrid alignment for iterative sequence database searches},
journal = {Concurr. Pract. Exp.},
volume = {16},
number = {9},
pages = {841--853},
year = {2004},
url = {https://doi.org/10.1002/cpe.809},
doi = {10.1002/CPE.809},
timestamp = {Thu, 21 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/LiLB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/LiLB03,
author = {Yuheng Li and
Mario Lauria and
Ralf Bundschuh},
title = {Using Hybrid Alignment for Iterative Sequence Database Searches},
booktitle = {17th International Parallel and Distributed Processing Symposium {(IPDPS}
2003), 22-26 April 2003, Nice, France, CD-ROM/Abstracts Proceedings},
pages = {152},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/IPDPS.2003.1213286},
doi = {10.1109/IPDPS.2003.1213286},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/LiLB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuBH02,
author = {Yi{-}Kuo Yu and
Ralf Bundschuh and
Terence Hwa},
title = {Hybrid alignment: high-performance with universal statistics},
journal = {Bioinform.},
volume = {18},
number = {6},
pages = {864--872},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.6.864},
doi = {10.1093/BIOINFORMATICS/18.6.864},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuBH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bundschuh02,
author = {Ralf Bundschuh},
title = {Rapid Significance Estimation in Local Sequence Alignment with Gaps},
journal = {J. Comput. Biol.},
volume = {9},
number = {2},
pages = {243--260},
year = {2002},
url = {https://doi.org/10.1089/10665270252935449},
doi = {10.1089/10665270252935449},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bundschuh02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bundschuh01,
author = {Ralf Bundschuh},
editor = {Thomas Lengauer},
title = {Rapid significance estimation in local sequence alignment with gaps},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {77--85},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369173},
doi = {10.1145/369133.369173},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bundschuh01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/BundschuhH00,
author = {Ralf Bundschuh and
Terence Hwa},
title = {An analytic study of the phase transition line in local sequence alignment
with gaps},
journal = {Discret. Appl. Math.},
volume = {104},
number = {1-3},
pages = {113--142},
year = {2000},
url = {https://doi.org/10.1016/S0166-218X(00)00188-8},
doi = {10.1016/S0166-218X(00)00188-8},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/BundschuhH00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bundschuh00,
author = {Ralf Bundschuh},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An analytic approach to significance assessment in local sequence
alignment with gaps},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {86--95},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332350},
doi = {10.1145/332306.332350},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bundschuh00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/OlsenBH99,
author = {Rolf Olsen and
Ralf Bundschuh and
Terence Hwa},
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Rapid Assessment of Extremal Statistics for Gapped Local Alignment},
booktitle = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
pages = {211--222},
publisher = {{AAAI}},
year = {1999},
url = {http://www.aaai.org/Library/ISMB/1999/ismb99-025.php},
timestamp = {Mon, 24 Jun 2013 09:48:15 +0200},
biburl = {https://dblp.org/rec/conf/ismb/OlsenBH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BundschuhH98,
author = {Ralf Bundschuh and
Terence Hwa},
title = {Detectability of Sequence Homology by {DNA} Hybridization},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 15:48:14 +0200},
biburl = {https://dblp.org/rec/conf/gcb/BundschuhH98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2023-09-27 22:40 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
