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BibTeX records: Pedro Carmona-Saez
@article{DBLP:journals/bib/ToroDominguezMMLCBGPCA23, author = {Daniel Toro{-}Dom{\'{\i}}nguez and Jordi Martorell{-}Marugan and Manuel Mart{\'{\i}}nez{-}Bueno and Ra{\'{u}}l L{\'{o}}pez{-}Dom{\'{\i}}nguez and Elena Carnero{-}Montoro and Guillermo Barturen and Daniel Goldman and Michelle Petri and Pedro Carmona{-}Saez and Marta E. Alarc{\'{o}}n{-}Riquelme}, title = {Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'}, journal = {Briefings Bioinform.}, volume = {25}, number = {1}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad454}, doi = {10.1093/BIB/BBAD454}, timestamp = {Fri, 26 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/ToroDominguezMMLCBGPCA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/Martorell-Marugan23, author = {Jordi Martorell{-}Marugan and Marco Chierici and Giuseppe Jurman and Marta E. Alarc{\'{o}}n{-}Riquelme and Pedro Carmona{-}Saez}, title = {Differential diagnosis of systemic lupus erythematosus and Sj{\"{o}}gren's syndrome using machine learning and multi-omics data}, journal = {Comput. Biol. Medicine}, volume = {152}, pages = {106373}, year = {2023}, url = {https://doi.org/10.1016/j.compbiomed.2022.106373}, doi = {10.1016/J.COMPBIOMED.2022.106373}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cbm/Martorell-Marugan23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Toro-DominguezM22, author = {Daniel Toro{-}Dom{\'{\i}}nguez and Jordi Martorell{-}Marugan and Manuel Mart{\'{\i}}nez{-}Bueno and Ra{\'{u}}l L{\'{o}}pez{-}Dom{\'{\i}}nguez and Elena Carnero{-}Montoro and Guillermo Barturen and Daniel Goldman and Michelle Petri and Pedro Carmona{-}Saez and Marta E. Alarc{\'{o}}n{-}Riquelme}, title = {Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression}, journal = {Briefings Bioinform.}, volume = {23}, number = {5}, year = {2022}, url = {https://doi.org/10.1093/bib/bbac332}, doi = {10.1093/BIB/BBAC332}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/Toro-DominguezM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Aparicio-Puerta22, author = {Ernesto Aparicio{-}Puerta and Cristina G{\'{o}}mez{-}Mart{\'{\i}}n and Stavros Giannoukakos and Jos{\'{e}} Mar{\'{\i}}a Medina and Chantal Scheepbouwer and Adri{\'{a}}n Garc{\'{\i}}a{-}Moreno and Pedro Carmona{-}Saez and Bastian Fromm and Michiel Pegtel and Andreas Keller and Juan Antonio Marchal and Michael Hackenberg}, title = {sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{W1}}, pages = {710--717}, year = {2022}, url = {https://doi.org/10.1093/nar/gkac363}, doi = {10.1093/NAR/GKAC363}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Aparicio-Puerta22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Toro-DominguezV21, author = {Daniel Toro{-}Dom{\'{\i}}nguez and Juan Antonio Villatoro{-}Garc{\'{\i}}a and Jordi Martorell{-}Marugan and Yolanda Rom{\'{a}}n{-}Montoya and Marta E. Alarc{\'{o}}n{-}Riquelme and Pedro Carmona{-}Saez}, title = {A survey of gene expression meta-analysis: methods and applications}, journal = {Briefings Bioinform.}, volume = {22}, number = {2}, pages = {1694--1705}, year = {2021}, url = {https://doi.org/10.1093/bib/bbaa019}, doi = {10.1093/BIB/BBAA019}, timestamp = {Mon, 07 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Toro-DominguezV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrouleLGRCMMCGA21, author = {Kevin Troul{\'{e}} and Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and Santiago Garc{\'{\i}}a{-}Mart{\'{\i}}n and Miguel Reboiro{-}Jato and Carlos Carretero{-}Puche and Jordi Martorell{-}Marugan and Guillermo Mart{\'{\i}}n{-}Serrano and Pedro Carmona{-}Saez and Daniel Glez{-}Pe{\~{n}}a and F{\'{a}}tima Al{-}Shahrour and Gonzalo G{\'{o}}mez{-}L{\'{o}}pez}, title = {{DREIMT:} a drug repositioning database and prioritization tool for immunomodulation}, journal = {Bioinform.}, volume = {37}, number = {4}, pages = {578--579}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa727}, doi = {10.1093/BIOINFORMATICS/BTAA727}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrouleLGRCMMCGA21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Martorell-Marugan21, author = {Jordi Martorell{-}Marugan and Ra{\'{u}}l L{\'{o}}pez{-}Dom{\'{\i}}nguez and Adri{\'{a}}n Garc{\'{\i}}a{-}Moreno and Daniel Toro{-}Dom{\'{\i}}nguez and Juan Antonio Villatoro{-}Garc{\'{\i}}a and Guillermo Barturen and Adoraci{\'{o}}n Mart{\'{\i}}n{-}G{\'{o}}mez and Kevin Troul{\'{e}} and Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and F{\'{a}}tima Al{-}Shahrour and V{\'{\i}}ctor Gonz{\'{a}}lez{-}Rumayor and Mar{\'{\i}}a Pe{\~{n}}a{-}Chilet and Joaqu{\'{\i}}n Dopazo and Julio S{\'{a}}ez{-}Rodr{\'{\i}}guez and Marta E. Alarc{\'{o}}n{-}Riquelme and Pedro Carmona{-}Saez}, title = {A comprehensive database for integrated analysis of omics data in autoimmune diseases}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {343}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04268-4}, doi = {10.1186/S12859-021-04268-4}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Martorell-Marugan21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Toro-DominguezM19, author = {Daniel Toro{-}Dom{\'{\i}}nguez and Jordi Martorell{-}Marugan and Ra{\'{u}}l L{\'{o}}pez{-}Dom{\'{\i}}nguez and Adri{\'{a}}n Garc{\'{\i}}a{-}Moreno and V{\'{\i}}ctor Gonz{\'{a}}lez{-}Rumayor and Marta E. Alarc{\'{o}}n{-}Riquelme and Pedro Carmona{-}Saez}, title = {ImaGEO: integrative gene expression meta-analysis from {GEO} database}, journal = {Bioinform.}, volume = {35}, number = {5}, pages = {880--882}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty721}, doi = {10.1093/BIOINFORMATICS/BTY721}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Toro-DominguezM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Martorell-Marugan19, author = {Jordi Martorell{-}Marugan and V{\'{\i}}ctor Gonz{\'{a}}lez{-}Rumayor and Pedro Carmona{-}Saez}, title = {mCSEA: detecting subtle differentially methylated regions}, journal = {Bioinform.}, volume = {35}, number = {18}, pages = {3257--3262}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz096}, doi = {10.1093/BIOINFORMATICS/BTZ096}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Martorell-Marugan19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Carmona-SaezVLT17, author = {Pedro Carmona{-}Saez and Nieves Varela and Mar{\'{\i}}a Jos{\'{e}} Luque and Daniel Toro{-}Dom{\'{\i}}nguez and Jordi Martorell{-}Marugan and Marta E. Alarc{\'{o}}n{-}Riquelme and Concepci{\'{o}}n Mara{\~{n}}{\'{o}}n}, title = {Metagene projection characterizes {GEN2.2} and {CAL-1} as relevant human plasmacytoid dendritic cell models}, journal = {Bioinform.}, volume = {33}, number = {23}, pages = {3691--3695}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx502}, doi = {10.1093/BIOINFORMATICS/BTX502}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Carmona-SaezVLT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Martorell-Marugan17, author = {Jordi Martorell{-}Marugan and Daniel Toro{-}Dom{\'{\i}}nguez and Marta E. Alarc{\'{o}}n{-}Riquelme and Pedro Carmona{-}Saez}, title = {MetaGenyo: a web tool for meta-analysis of genetic association studies}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {563:1--563:6}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1990-4}, doi = {10.1186/S12859-017-1990-4}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Martorell-Marugan17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/edbt/BorgeltYNCP11, author = {Christian Borgelt and Xiaoyuan Yang and Rub{\'{e}}n Nogales{-}Cadenas and Pedro Carmona{-}Saez and Alberto D. Pascual{-}Montano}, editor = {Anastasia Ailamaki and Sihem Amer{-}Yahia and Jignesh M. Patel and Tore Risch and Pierre Senellart and Julia Stoyanovich}, title = {Finding closed frequent item sets by intersecting transactions}, booktitle = {{EDBT} 2011, 14th International Conference on Extending Database Technology, Uppsala, Sweden, March 21-24, 2011, Proceedings}, pages = {367--376}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/1951365.1951410}, doi = {10.1145/1951365.1951410}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/edbt/BorgeltYNCP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VazquezNABGCTPC10, author = {Miguel V{\'{a}}zquez and Rub{\'{e}}n Nogales{-}Cadenas and Javier Arroyo and Pedro Bot{\'{\i}}as and Raul Garc{\'{\i}}a and Jos{\'{e}} Mar{\'{\i}}a Carazo and Francisco Tirado and Alberto D. Pascual{-}Montano and Pedro Carmona{-}Saez}, title = {{MARQ:} an online tool to mine {GEO} for experiments with similar or opposite gene expression signatures}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Web-Server-Issue}, pages = {228--232}, year = {2010}, url = {https://doi.org/10.1093/nar/gkq476}, doi = {10.1093/NAR/GKQ476}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/VazquezNABGCTPC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isami/VazquezNCPP10, author = {Miguel V{\'{a}}zquez and Rub{\'{e}}n Nogales and Pedro Carmona{-}Saez and Alberto Pascual and Juan Pav{\'{o}}n}, editor = {Miguel P. Rocha and Florentino Fern{\'{a}}ndez Riverola and Hagit Shatkay and Juan M. Corchado}, title = {Rbbt: {A} Framework for Fast Bioinformatics Development with Ruby}, booktitle = {Advances in Bioinformatics - 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics 2010 {(IWPACBB} 2010), Guimar{\~{a}}es, Portugal, 16-18 June 2010}, series = {Advances in Intelligent and Soft Computing}, volume = {74}, pages = {201--208}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-13214-8\_26}, doi = {10.1007/978-3-642-13214-8\_26}, timestamp = {Wed, 12 Oct 2022 08:58:53 +0200}, biburl = {https://dblp.org/rec/conf/isami/VazquezNCPP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VazquezCNCTCP09, author = {Miguel V{\'{a}}zquez and Pedro Carmona{-}Saez and Rub{\'{e}}n Nogales{-}Cadenas and Monica Chagoyen and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {{SENT:} semantic features in text}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Web-Server-Issue}, pages = {153--159}, year = {2009}, url = {https://doi.org/10.1093/nar/gkp392}, doi = {10.1093/NAR/GKP392}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/VazquezCNCTCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Nogales-CadenasCVVYTCP09, author = {Rub{\'{e}}n Nogales{-}Cadenas and Pedro Carmona{-}Saez and Miguel V{\'{a}}zquez and Cesar Vicente and Xiaoyuan Yang and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Web-Server-Issue}, pages = {317--322}, year = {2009}, url = {https://doi.org/10.1093/nar/gkp416}, doi = {10.1093/NAR/GKP416}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Nogales-CadenasCVVYTCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AbascalCCP08, author = {Federico Abascal and Pedro Carmona{-}Saez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data}, journal = {Bioinform.}, volume = {24}, number = {9}, pages = {1208--1209}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn094}, doi = {10.1093/BIOINFORMATICS/BTN094}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbascalCCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Mejia-RoaCNVVYGTP08, author = {Edgardo Mej{\'{\i}}a{-}Roa and Pedro Carmona{-}Saez and Rub{\'{e}}n Nogales and Cesar Vicente and Miguel V{\'{a}}zquez and X. Y. Yang and Carlos Garc{\'{\i}}a and Francisco Tirado and Alberto D. Pascual{-}Montano}, title = {bioNMF: a web-based tool for nonnegative matrix factorization in biology}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Web-Server-Issue}, pages = {523--528}, year = {2008}, url = {https://doi.org/10.1093/nar/gkn335}, doi = {10.1093/NAR/GKN335}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Mejia-RoaCNVVYGTP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCSCP06, author = {Monica Chagoyen and Pedro Carmona{-}Saez and Hagit Shatkay and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Discovering semantic features in the literature: a foundation for building functional associations}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {41}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-41}, doi = {10.1186/1471-2105-7-41}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCSCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Carmona-SaezCRTCP06, author = {Pedro Carmona{-}Saez and Monica Chagoyen and Andr{\'{e}}s Rodr{\'{\i}}guez Moreno and Oswaldo Trelles and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Integrated analysis of gene expression by association rules discovery}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {54}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-54}, doi = {10.1186/1471-2105-7-54}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Carmona-SaezCRTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Carmona-SaezPTCP06, author = {Pedro Carmona{-}Saez and Roberto D. Pascual{-}Marqui and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Biclustering of gene expression data by non-smooth non-negative matrix factorization}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {78}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-78}, doi = {10.1186/1471-2105-7-78}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Carmona-SaezPTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCGCP06, author = {Monica Chagoyen and Pedro Carmona{-}Saez and Concha Gil and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {A literature-based similarity metric for biological processes}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {363}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-363}, doi = {10.1186/1471-2105-7-363}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCGCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Pascual-MontanoCCTCP06, author = {Alberto D. Pascual{-}Montano and Pedro Carmona{-}Saez and Monica Chagoyen and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto D. Pascual{-}Marqui}, title = {bioNMF: a versatile tool for non-negative matrix factorization in biology}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {366}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-366}, doi = {10.1186/1471-2105-7-366}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Pascual-MontanoCCTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/Pascual-MontanoTCCP05, author = {Alberto D. Pascual{-}Montano and Francisco Tirado and Pedro Carmona{-}Saez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto D. Pascual{-}Marqui}, title = {Two-way clustering of gene expression profiles by sparse matrix factorization}, booktitle = {Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB} 2005 Workshops, Stanford, CA, USA, August 8-11, 2005}, pages = {103--104}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CSBW.2005.137}, doi = {10.1109/CSBW.2005.137}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/Pascual-MontanoTCCP05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ida/FamiliLCM05, author = {A. Fazel Famili and Ziying Liu and Pedro Carmona{-}Saez and Alaka Mullick}, editor = {A. Fazel Famili and Joost N. Kok and Jos{\'{e}} Mar{\'{\i}}a Pe{\~{n}}a S{\'{a}}nchez and Arno Siebes and A. J. Feelders}, title = {Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage}, booktitle = {Advances in Intelligent Data Analysis VI, 6th International Symposium on Intelligent Data Analysis, {IDA} 2005, Madrid, Spain, September 8-10, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3646}, pages = {74--85}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11552253\_8}, doi = {10.1007/11552253\_8}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/ida/FamiliLCM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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