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ORCIDBibTeX records: George M. Church
@article{DBLP:journals/ncs/PingCZHZZLLCCZY22,
author = {Zhi Ping and
Shihong Chen and
Guangyu Zhou and
Xiaoluo Huang and
Sha Joe Zhu and
Haoling Zhang and
Henry H. Lee and
Zhaojun Lan and
Jie Cui and
Tai Chen and
Wenwei Zhang and
Huanming Yang and
Xun Xu and
George M. Church and
Yue Shen},
title = {Towards practical and robust DNA-based data archiving using the yin-yang
codec system},
journal = {Nat. Comput. Sci.},
volume = {2},
number = {4},
pages = {234--242},
year = {2022},
url = {https://doi.org/10.1038/s43588-022-00231-2},
doi = {10.1038/S43588-022-00231-2},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/PingCZHZZLLCCZY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MarchandsJNC21,
author = {Jorge A. Marchand and
Merrick D. Pierson smela and
Thomas H. H. Jordan and
Kamesh Narasimhan and
George M. Church},
title = {{TBDB:} a database of structurally annotated T-box riboswitch: tRNA
pairs},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D229--D235},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa721},
doi = {10.1093/NAR/GKAA721},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MarchandsJNC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ncs/GrishinRTOQMGSF21,
author = {Dennis Grishin and
Jean Louis Raisaro and
Juan Ram{\'{o}}n Troncoso{-}Pastoriza and
Kamal Obbad and
Kevin Quinn and
Micka{\"{e}}l Misbach and
Jared Gollhardt and
Jo{\~{a}}o S{\'{a}} Sousa and
Jacques Fellay and
George M. Church and
Jean{-}Pierre Hubaux},
title = {Citizen-centered, auditable and privacy-preserving population genomics},
journal = {Nat. Comput. Sci.},
volume = {1},
number = {3},
pages = {192--198},
year = {2021},
url = {https://doi.org/10.1038/s43588-021-00044-9},
doi = {10.1038/S43588-021-00044-9},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/GrishinRTOQMGSF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargA0SDC20,
author = {Shilpa Garg and
John Aach and
Heng Li and
Isaac Sebenius and
Richard Durbin and
George M. Church},
title = {A haplotype-aware de novo assembly of related individuals using pedigree
sequence graph},
journal = {Bioinform.},
volume = {36},
number = {8},
pages = {2385--2392},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz942},
doi = {10.1093/BIOINFORMATICS/BTZ942},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargA0SDC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeesensors/PallaTC18,
author = {Mirk{\'{o}} Palla and
David B. Thompson and
George M. Church},
title = {Single-Molecule Characterization of a Nanopore-Coupled Cas9 Protein
on an Electrode Array},
booktitle = {2018 {IEEE} SENSORS, New Delhi, India, October 28-31, 2018},
pages = {1--4},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ICSENS.2018.8630288},
doi = {10.1109/ICSENS.2018.8630288},
timestamp = {Mon, 19 Dec 2022 11:25:47 +0100},
biburl = {https://dblp.org/rec/conf/ieeesensors/PallaTC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CybulskiBCTK17,
author = {Thaddeus Cybulski and
Edward S. Boyden and
George M. Church and
Keith E. J. Tyo and
Konrad P. K{\"{o}}rding},
title = {Nucleotide-time alignment for molecular recorders},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {5},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005483},
doi = {10.1371/JOURNAL.PCBI.1005483},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CybulskiBCTK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-03346,
author = {Sam Sinai and
Eric D. Kelsic and
George M. Church and
Martin A. Nowak},
title = {Variational auto-encoding of protein sequences},
journal = {CoRR},
volume = {abs/1712.03346},
year = {2017},
url = {http://arxiv.org/abs/1712.03346},
eprinttype = {arXiv},
eprint = {1712.03346},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-03346.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/BlawatGHCTIPC16,
author = {Meinolf Blawat and
Klaus Gaedke and
Ingo Huetter and
Xiao{-}Ming Chen and
Brian Turczyk and
Samuel A. Inverso and
Benjamin Pruitt and
George M. Church},
editor = {Michelle Connolly},
title = {Forward Error Correction for {DNA} Data Storage},
booktitle = {International Conference on Computational Science 2016, {ICCS} 2016,
6-8 June 2016, San Diego, California, {USA}},
series = {Procedia Computer Science},
volume = {80},
pages = {1011--1022},
publisher = {Elsevier},
year = {2016},
url = {https://doi.org/10.1016/j.procs.2016.05.398},
doi = {10.1016/J.PROCS.2016.05.398},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccS/BlawatGHCTIPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MandellLMTKNGSC15,
author = {Daniel J. Mandell and
Marc J. Lajoie and
Michael T. Mee and
Ryo Takeuchi and
Gleb Kuznetsov and
Julie E. Norville and
Christopher J. Gregg and
Barry L. Stoddard and
George M. Church},
title = {Biocontainment of genetically modified organisms by synthetic protein
design},
journal = {Nat.},
volume = {518},
number = {7537},
pages = {55--60},
year = {2015},
url = {https://doi.org/10.1038/nature14121},
doi = {10.1038/NATURE14121},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/MandellLMTKNGSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MandellLMTKNGSC15a,
author = {Daniel J. Mandell and
Marc J. Lajoie and
Michael T. Mee and
Ryo Takeuchi and
Gleb Kuznetsov and
Julie E. Norville and
Christopher J. Gregg and
Barry L. Stoddard and
George M. Church},
title = {Corrigendum: Biocontainment of genetically modified organisms by synthetic
protein design},
journal = {Nat.},
volume = {527},
number = {7577},
pages = {264},
year = {2015},
url = {https://doi.org/10.1038/nature15536},
doi = {10.1038/NATURE15536},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/MandellLMTKNGSC15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GlaserZCK15,
author = {Joshua I. Glaser and
Bradley M. Zamft and
George M. Church and
Konrad P. K{\"{o}}rding},
title = {Puzzle Imaging: Using Large-scale Dimensionality Reduction Algorithms
for Localization},
journal = {CoRR},
volume = {abs/1502.07816},
year = {2015},
url = {http://arxiv.org/abs/1502.07816},
eprinttype = {arXiv},
eprint = {1502.07816},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/GlaserZCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuellYC14,
author = {Marc G{\"{u}}ell and
Luhan Yang and
George M. Church},
title = {Genome editing assessment using {CRISPR} Genome Analyzer {(CRISPR-GA)}},
journal = {Bioinform.},
volume = {30},
number = {20},
pages = {2968--2970},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu427},
doi = {10.1093/BIOINFORMATICS/BTU427},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuellYC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeaneCABJSGPLCM14,
author = {Michael Keane and
Thomas Craig and
Jessica Alf{\"{o}}ldi and
Aaron M. Berlin and
Jeremy Johnson and
Andrei Seluanov and
Vera Gorbunova and
Federica Di Palma and
Kerstin Lindblad{-}Toh and
George M. Church and
Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
title = {The Naked Mole Rat Genome Resource: facilitating analyses of cancer
and longevity-related adaptations},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3558--3560},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu579},
doi = {10.1093/BIOINFORMATICS/BTU579},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KeaneCABJSGPLCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ficn/CybulskiGMZBCK15,
author = {Thaddeus Cybulski and
Joshua I. Glaser and
Adam Henry Marblestone and
Bradley M. Zamft and
Edward S. Boyden III and
George M. Church and
Konrad P. K{\"{o}}rding},
title = {Spatial information in large-scale neural recordings},
journal = {Frontiers Comput. Neurosci.},
volume = {8},
pages = {172},
year = {2014},
url = {https://doi.org/10.3389/fncom.2014.00172},
doi = {10.3389/FNCOM.2014.00172},
timestamp = {Sat, 23 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ficn/CybulskiGMZBCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MontagueCGCV14,
author = {Tessa G. Montague and
Jos{\'{e}} M. Cruz and
James A. Gagnon and
George M. Church and
Eivind Valen},
title = {{CHOPCHOP:} a CRISPR/Cas9 and {TALEN} web tool for genome editing},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {401--407},
year = {2014},
url = {https://doi.org/10.1093/nar/gku410},
doi = {10.1093/NAR/GKU410},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MontagueCGCV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ficn/MarblestoneZMSCGASKDSAMCRBCK13,
author = {Adam H. Marblestone and
Bradley M. Zamft and
Yael Maguire and
Mikhail G. Shapiro and
Thaddeus Cybulski and
Joshua I. Glaser and
Dario Amodei and
P. Benjamin Stranges and
Reza Kalhor and
David Dalrymple and
Dongjin Seo and
Elad Alon and
Michel M. Maharbiz and
Jose M. Carmena and
Jan M. Rabaey and
Edward S. Boyden III and
George M. Church and
Konrad P. K{\"{o}}rding},
title = {Physical principles for scalable neural recording},
journal = {Frontiers Comput. Neurosci.},
volume = {7},
pages = {137},
year = {2013},
url = {https://doi.org/10.3389/fncom.2013.00137},
doi = {10.3389/FNCOM.2013.00137},
timestamp = {Sat, 23 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ficn/MarblestoneZMSCGASKDSAMCRBCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RockwellGC13,
author = {Graham Rockwell and
Nicholas J. Guido and
George M. Church},
title = {Redirector: Designing Cell Factories by Reconstructing the Metabolic
Objective},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {1},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1002882},
doi = {10.1371/JOURNAL.PCBI.1002882},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RockwellGC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GlaserZMMTBCK13,
author = {Joshua I. Glaser and
Bradley M. Zamft and
Adam H. Marblestone and
Jeffrey R. Moffitt and
Keith E. J. Tyo and
Edward S. Boyden III and
George M. Church and
Konrad P. K{\"{o}}rding},
title = {Statistical Analysis of Molecular Signal Recording},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {7},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003145},
doi = {10.1371/JOURNAL.PCBI.1003145},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GlaserZMMTBCK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagalhaesCC09,
author = {Jo{\~{a}}o Pedro de Magalh{\~{a}}es and
Jo{\~{a}}o Curado and
George M. Church},
title = {Meta-analysis of age-related gene expression profiles identifies common
signatures of aging},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {875--881},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp073},
doi = {10.1093/BIOINFORMATICS/BTP073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagalhaesCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/siggraph/DouglasDLHGMTVCS09,
author = {Shawn M. Douglas and
Hendrik Dietz and
Tim Liedl and
Bj{\"{o}}rn H{\"{o}}gberg and
Franziska Graf and
Adam H. Marblestone and
Surat Teerapittayanon and
Alejandro Vazquez and
George M. Church and
William M. Shih},
title = {Design and self-assembly of {DNA} into nanoscale 3D shapes},
booktitle = {International Conference on Computer Graphics and Interactive Techniques,
{SIGGRAPH} 2009, New Orleans, Louisiana, USA, August 3-7, 2009, Talks
Proceedings},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1597990.1598070},
doi = {10.1145/1597990.1598070},
timestamp = {Fri, 12 Mar 2021 10:21:02 +0100},
biburl = {https://dblp.org/rec/conf/siggraph/DouglasDLHGMTVCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/usenix/ZaranekCVC08,
author = {Alexander Wait Zaranek and
Tom Clegg and
Ward Vandewege and
George M. Church},
editor = {Rebecca Isaacs and
Yuanyuan Zhou},
title = {Free Factories: Unified Infrastructure for Data Intensive Web Services},
booktitle = {2008 {USENIX} Annual Technical Conference, Boston, MA, USA, June 22-27,
2008. Proceedings},
pages = {391--404},
publisher = {{USENIX} Association},
year = {2008},
url = {http://www.usenix.org/events/usenix08/tech/full\_papers/zaranek/zaranek.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/usenix/ZaranekCVC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KharchenkoCFVC06,
author = {Peter V. Kharchenko and
Lifeng Chen and
Yoav Freund and
Dennis Vitkup and
George M. Church},
title = {Identifying metabolic enzymes with multiple types of association evidence},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {177},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-177},
doi = {10.1186/1471-2105-7-177},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KharchenkoCFVC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoC05,
author = {Yuan Gao and
George M. Church},
title = {Improving molecular cancer class discovery through sparse non-negative
matrix factorization},
journal = {Bioinform.},
volume = {21},
number = {21},
pages = {3970--3975},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti653},
doi = {10.1093/BIOINFORMATICS/BTI653},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GradRHC04,
author = {Yonatan H. Grad and
Frederick P. Roth and
Marc S. Halfon and
George M. Church},
title = {Prediction of similarly acting cis-regulatory modules by subsequence
profiling and comparative genomics in Drosophila melanogaster and
D.pseudoobscura},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2738--2750},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth320},
doi = {10.1093/BIOINFORMATICS/BTH320},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GradRHC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaticCCP04,
author = {Andr{\'{e}} Catic and
Cal T. Collins and
George M. Church and
Hidde L. Ploegh},
title = {Preferred in vivo ubiquitination sites},
journal = {Bioinform.},
volume = {20},
number = {18},
pages = {3302--3307},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth407},
doi = {10.1093/BIOINFORMATICS/BTH407},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaticCCP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LelandaisCDVCJM04,
author = {Ga{\"{e}}lle Lelandais and
St{\'{e}}phane Le Crom and
Fr{\'{e}}d{\'{e}}ric Devaux and
St{\'{e}}phane Vialette and
George M. Church and
Claude Jacq and
Philippe Marc},
title = {yMGV: a cross-species expression data mining tool},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {323--325},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh135},
doi = {10.1093/NAR/GKH135},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LelandaisCDVCJM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/DhaeseleerC04,
author = {Patrik D'haeseleer and
George M. Church},
title = {Estimating and Improving Protein Interaction Error Rates},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {216--223},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332435},
doi = {10.1109/CSB.2004.1332435},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/DhaeseleerC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KharchenkoVC04,
author = {Peter V. Kharchenko and
Dennis Vitkup and
George M. Church},
title = {Filling gaps in a metabolic network using expression information},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {178--185},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth930},
doi = {10.1093/BIOINFORMATICS/BTH930},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/KharchenkoVC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KingLDJCR03,
author = {Oliver D. King and
Jeffrey C. Lee and
Aim{\'{e}}e M. Dudley and
Daniel M. Janse and
George M. Church and
Frederick P. Roth},
title = {Predicting phenotype from patterns of annotation},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {183--189},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i183?etoc},
timestamp = {Tue, 18 Aug 2009 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/KingLDJCR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SteffenPADC02,
author = {Martin Steffen and
Allegra Petti and
John Aach and
Patrik D'haeseleer and
George M. Church},
title = {Automated modelling of signal transduction networks},
journal = {{BMC} Bioinform.},
volume = {3},
pages = {34},
year = {2002},
url = {https://doi.org/10.1186/1471-2105-3-34},
doi = {10.1186/1471-2105-3-34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SteffenPADC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/McGuireC02,
author = {Abigail Manson McGuire and
George M. Church},
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt},
title = {Discovery of {DNA} Regulatory Motifs},
booktitle = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
pages = {129--147},
publisher = {{MIT} Press},
year = {2002},
timestamp = {Tue, 20 Aug 2002 13:42:34 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/McGuireC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JamshidiEFCP01,
author = {Neema Jamshidi and
Jeremy S. Edwards and
Tom Fahland and
George M. Church and
Bernhard O. Palsson},
title = {Dynamic simulation of the human red blood cell metabolic network},
journal = {Bioinform.},
volume = {17},
number = {3},
pages = {286--287},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.3.286},
doi = {10.1093/BIOINFORMATICS/17.3.286},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JamshidiEFCP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AachC01,
author = {John Aach and
George M. Church},
title = {Aligning gene expression time series with time warping algorithms},
journal = {Bioinform.},
volume = {17},
number = {6},
pages = {495--508},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.6.495},
doi = {10.1093/BIOINFORMATICS/17.6.495},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AachC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenKTRC01,
author = {Ting Chen and
Ming{-}Yang Kao and
Matthew Tepel and
John Rush and
George M. Church},
title = {A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem
Mass Spectrometry},
journal = {J. Comput. Biol.},
volume = {8},
number = {3},
pages = {325--337},
year = {2001},
url = {https://doi.org/10.1089/10665270152530872},
doi = {10.1089/10665270152530872},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenKTRC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenJC01,
author = {Ting Chen and
Jacob D. Jaffe and
George M. Church},
title = {Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry},
journal = {J. Comput. Biol.},
volume = {8},
number = {6},
pages = {571--583},
year = {2001},
url = {https://doi.org/10.1089/106652701753307494},
doi = {10.1089/106652701753307494},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenJC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChenJC01,
author = {Ting Chen and
Jacob D. Jaffe and
George M. Church},
editor = {Thomas Lengauer},
title = {Algorithms for identifying protein cross-links via tandem mass spectrometry},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {95--102},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369177},
doi = {10.1145/369133.369177},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChenJC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Church01,
author = {George M. Church},
editor = {Thomas Lengauer},
title = {Hunger for new technologies, metrics, and spatiotemporal models in
functional genomic (abstract only)},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {103},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369179},
doi = {10.1145/369133.369179},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Church01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-CE-0101016,
author = {Ting Chen and
Ming{-}Yang Kao and
Matthew Tepel and
John Rush and
George M. Church},
title = {A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem
Mass Spectrometry},
journal = {CoRR},
volume = {cs.CE/0101016},
year = {2001},
url = {https://arxiv.org/abs/cs/0101016},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/cs-CE-0101016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeichmannCCP00,
author = {Sarah A. Teichmann and
Cyrus Chothia and
George M. Church and
Jong{-}Chan Park},
title = {Fast assignment of protein structures to sequences using the Intermediate
Sequence Library {PDB-ISL}},
journal = {Bioinform.},
volume = {16},
number = {2},
pages = {117--124},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.2.117},
doi = {10.1093/BIOINFORMATICS/16.2.117},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeichmannCCP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChengC00,
author = {Yizong Cheng and
George M. Church},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Biclustering of Expression Data},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {93--103},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-010.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/ChengC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TeichmannCCP00,
author = {Sarah A. Teichmann and
Cyrus Chothia and
George M. Church and
Jong{-}Chan Park},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {PDB{\_}ISL: an intermediate sequence library for protein structure
assignment},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {283--289},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332566},
doi = {10.1145/332306.332566},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TeichmannCCP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/ChenKTRC00,
author = {Ting Chen and
Ming{-}Yang Kao and
Matthew Tepel and
John Rush and
George M. Church},
editor = {David B. Shmoys},
title = {A dynamic programming approach to de novo peptide sequencing via tandem
mass spectrometry},
booktitle = {Proceedings of the Eleventh Annual {ACM-SIAM} Symposium on Discrete
Algorithms, January 9-11, 2000, San Francisco, CA, {USA}},
pages = {389--398},
publisher = {{ACM/SIAM}},
year = {2000},
url = {http://dl.acm.org/citation.cfm?id=338219.338584},
timestamp = {Fri, 07 Dec 2012 17:02:08 +0100},
biburl = {https://dblp.org/rec/conf/soda/ChenKTRC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChenHC99,
author = {Ting Chen and
Hongyu L. He and
George M. Church},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Modeling Gene Expression with Differential Equations},
booktitle = {Proceedings of the 4th Pacific Symposium on Biocomputing, {PSB} 1999,
The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9,
1999},
pages = {29--40},
year = {1999},
url = {http://psb.stanford.edu/psb-online/proceedings/psb99/Chen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChenHC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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