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ORCIDBibTeX records: Mark J. Clement
@article{DBLP:journals/corr/abs-2305-16275,
author = {Chetan Joshi and
Lawry Sorenson and
Ammon Wolfert and
Mark J. Clement and
Joseph Price and
Kasey Buckles},
title = {{CENSUS-HWR:} a large training dataset for offline handwriting recognition},
journal = {CoRR},
volume = {abs/2305.16275},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.16275},
doi = {10.48550/ARXIV.2305.16275},
eprinttype = {arXiv},
eprint = {2305.16275},
timestamp = {Wed, 07 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-16275.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icfhr/BurdettFBSSSCP22,
author = {Eric Burdett and
Stanley Fujimoto and
Timothy Brown and
Ammon Shurtz and
Daniel Segrera and
Lawry Sorenson and
Mark J. Clement and
Joseph Price},
editor = {Utkarsh Porwal and
Alicia Forn{\'{e}}s and
Faisal Shafait},
title = {Active Transfer Learning for Handwriting Recognition},
booktitle = {Frontiers in Handwriting Recognition - 18th International Conference,
{ICFHR} 2022, Hyderabad, India, December 4-7, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13639},
pages = {245--258},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-21648-0\_17},
doi = {10.1007/978-3-031-21648-0\_17},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icfhr/BurdettFBSSSCP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/FujimotoLC20,
author = {M. Stanley Fujimoto and
Cole A. Lyman and
Mark J. Clement},
title = {Kcollections: {A} Fast and Efficient Library for K-mers},
booktitle = {2020 {IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPSW} 2020, New Orleans, LA, USA, May 18-22, 2020},
pages = {193--198},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/IPDPSW50202.2020.00041},
doi = {10.1109/IPDPSW50202.2020.00041},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/FujimotoLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LymanCCFKB19,
author = {Cole A. Lyman and
Mark J. Clement and
Travis J. A. Craddock and
Mary Fletcher and
Nancy G. Klimas and
Gordon Broderick},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Feedback Regulation of Immune Response to Maximum Exercise in Gulf
War Illness},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {124--129},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3342188},
doi = {10.1145/3307339.3342188},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LymanCCFKB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LymanAMNMCB19,
author = {Cole A. Lyman and
Connor Anderson and
Matthew C. Morris and
Umesh K. Nandal and
Marianna J. Martindale and
Mark J. Clement and
Gordon Broderick},
editor = {Illhoi Yoo and
Jinbo Bi and
Xiaohua Hu},
title = {When the How Outweighs the What: the Pivotal Importance of Context},
booktitle = {2019 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2019, San Diego, CA, USA, November 18-21, 2019},
pages = {2149--2156},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIBM47256.2019.8983294},
doi = {10.1109/BIBM47256.2019.8983294},
timestamp = {Thu, 12 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LymanAMNMCB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JensenBDFLSGC18,
author = {Tanner D. Jensen and
Kristi A. Bresciano and
Emma Dallon and
M. Stanley Fujimoto and
Cole A. Lyman and
Enoch Stewart and
Joel Griffitts and
Mark J. Clement},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in
Randomly-Generated Peptide Libraries},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {139--144},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233599},
doi = {10.1145/3233547.3233599},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/JensenBDFLSGC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FujimotoSJCSB17,
author = {M. Stanley Fujimoto and
Anton Suvorov and
Nicholas O. Jensen and
Mark J. Clement and
Quinn Snell and
Seth M. Bybee},
title = {The OGCleaner: filtering false-positive homology clusters},
journal = {Bioinform.},
volume = {33},
number = {1},
pages = {125--127},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw571},
doi = {10.1093/BIOINFORMATICS/BTW571},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FujimotoSJCSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/FujimotoBLJSC17,
author = {Masaki Stanley Fujimoto and
Paul M. Bodily and
Cole A. Lyman and
Andrew J. Jacobsen and
Quinn Snell and
Mark J. Clement},
title = {Modeling Global and local Codon Bias with Deep Language Models},
booktitle = {17th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2017, Washington, DC, USA, October 23-25, 2017},
pages = {151--156},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/BIBE.2017.00-63},
doi = {10.1109/BIBE.2017.00-63},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/FujimotoBLJSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/FujimotoLSBSCBC17,
author = {M. Stanley Fujimoto and
Cole A. Lyman and
Anton Suvorov and
Paul M. Bodily and
Quinn Snell and
Keith A. Crandall and
Seth M. Bybee and
Mark J. Clement},
title = {Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction},
booktitle = {17th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2017, Washington, DC, USA, October 23-25, 2017},
pages = {212--216},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/BIBE.2017.00-53},
doi = {10.1109/BIBE.2017.00-53},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/FujimotoLSBSCBC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/LymanFSBSCBC17,
author = {Cole A. Lyman and
M. Stanley Fujimoto and
Anton Suvorov and
Paul M. Bodily and
Quinn Snell and
Keith A. Crandall and
Seth M. Bybee and
Mark J. Clement},
title = {Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn
Graphs},
booktitle = {17th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2017, Washington, DC, USA, October 23-25, 2017},
pages = {260--265},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/BIBE.2017.00-44},
doi = {10.1109/BIBE.2017.00-44},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/LymanFSBSCBC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-00164,
author = {Cole A. Lyman and
M. Stanley Fujimoto and
Anton Suvorov and
Paul M. Bodily and
Quinn Snell and
Keith A. Crandall and
Seth M. Bybee and
Mark J. Clement},
title = {Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn
Graphs},
journal = {CoRR},
volume = {abs/1709.00164},
year = {2017},
url = {http://arxiv.org/abs/1709.00164},
eprinttype = {arXiv},
eprint = {1709.00164},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-00164.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BodilyFSVC16,
author = {Paul M. Bodily and
M. Stanley Fujimoto and
Quinn Snell and
Dan Ventura and
Mark J. Clement},
title = {ScaffoldScaffolder: solving contig orientation via bidirected to directed
graph reduction},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {17--24},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv548},
doi = {10.1093/BIOINFORMATICS/BTV548},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BodilyFSVC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FujimotoSJCB16,
author = {M. Stanley Fujimoto and
Anton Suvorov and
Nicholas O. Jensen and
Mark J. Clement and
Seth M. Bybee},
title = {Detecting false positive sequence homology: a machine learning approach},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {101},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0955-3},
doi = {10.1186/S12859-016-0955-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FujimotoSJCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BodilyFPCER16,
author = {Paul M. Bodily and
M. Stanley Fujimoto and
Justin T. Page and
Mark J. Clement and
Mark T. W. Ebbert and
Perry G. Ridge},
title = {A novel approach for multi-SNP {GWAS} and its application in Alzheimer's
disease},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-7}},
pages = {268},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1093-7},
doi = {10.1186/S12859-016-1093-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BodilyFPCER16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BodilyFOOPCS15,
author = {Paul M. Bodily and
M. Stanley Fujimoto and
Cameron Ortega and
Nozomu Okuda and
Jared C. Price and
Mark J. Clement and
Quinn Snell},
title = {Heterozygous genome assembly via binary classification of homologous
sequence},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-7}},
pages = {S5},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S7-S5},
doi = {10.1186/1471-2105-16-S7-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BodilyFOOPCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FujimotoBOCS14,
author = {M. Stanley Fujimoto and
Paul M. Bodily and
Nozomu Okuda and
Mark J. Clement and
Quinn Snell},
title = {Effects of error-correction of heterozygous next-generation sequencing
data},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-7}},
pages = {S3},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S7-S3},
doi = {10.1186/1471-2105-15-S7-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FujimotoBOCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BodilyCSFR14,
author = {Paul M. Bodily and
Mark J. Clement and
Quinn Snell and
M. Stanley Fujimoto and
Perry G. Ridge},
editor = {Pierre Baldi and
Wei Wang},
title = {Haplotype-centered mapping for improved alignments and genetic association
studies},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {499--505},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649435},
doi = {10.1145/2649387.2649435},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/BodilyCSFR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SeeleyCGSBF14,
author = {Matthew Seeley and
Mark J. Clement and
Christophe G. Giraud{-}Carrier and
Quinn Snell and
Paul M. Bodily and
Stanley Fujimoto},
editor = {Pierre Baldi and
Wei Wang},
title = {A structured approach to ensemble learning for Alzheimer's disease
prediction},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {605--606},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2660797},
doi = {10.1145/2649387.2660797},
timestamp = {Fri, 17 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/SeeleyCGSBF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HongCCHCCSCJ13,
author = {Changjin Hong and
Nathan L. Clement and
Spencer Clement and
Saher Sue Hammoud and
Douglas T. Carrell and
Bradley R. Cairns and
Quinn Snell and
Mark J. Clement and
William Evan Johnson},
title = {Probabilistic alignment leads to improved accuracy and read coverage
for bisulfite sequencing data},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {337},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-337},
doi = {10.1186/1471-2105-14-337},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HongCCHCCSCJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JensenJCS13,
author = {James D. Jensen and
Daniel M. Jensen and
Mark J. Clement and
Quinn O. Snell},
title = {Probabilistic inference and ranking of gene regulatory pathways as
a shortest-path problem},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-13}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S13-S5},
doi = {10.1186/1471-2105-14-S13-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JensenJCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BodilyCSPFO13,
author = {Paul M. Bodily and
Mark J. Clement and
Quinn Snell and
Jared C. Price and
Stanley Fujimoto and
Nozomu Okuda},
editor = {Jing Gao},
title = {Application of a {MAX-CUT} Heuristic to the Contig Orientation Problem
in Genome Assembly},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {476},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506606},
doi = {10.1145/2506583.2506606},
timestamp = {Fri, 17 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/BodilyCSPFO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/PriceWUSC13,
author = {Jared C. Price and
Judson Ward and
Joshua Udall and
Quinn Snell and
Mark J. Clement},
title = {Identification and correction of substitution errors in Moleculo long
reads},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701609},
doi = {10.1109/BIBE.2013.6701609},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/PriceWUSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/SeeleyCS13,
author = {Matt Seeley and
Mark J. Clement and
Quinn Snell},
title = {Feature identification and reduction for improved generalization accuracy
in secondary-structure prediction},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701610},
doi = {10.1109/BIBE.2013.6701610},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/SeeleyCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SundbergCSVWC12,
author = {Kenneth Sundberg and
Mark J. Clement and
Quinn Snell and
Dan Ventura and
Michael Whiting and
Keith A. Crandall},
title = {Phylogenetic search through partial tree mixing},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-13}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S13-S8},
doi = {10.1186/1471-2105-13-S13-S8},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SundbergCSVWC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementSAB12,
author = {Mark J. Clement and
Quinn Snell and
Srinivas Aluru and
David A. Bader},
title = {HiCOMB Introduction},
booktitle = {26th {IEEE} International Parallel and Distributed Processing Symposium
Workshops {\&} PhD Forum, {IPDPS} 2012, Shanghai, China, May 21-25,
2012},
pages = {663--664},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/IPDPSW.2012.338},
doi = {10.1109/IPDPSW.2012.338},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementSAB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementSBTGSCJ12,
author = {Nathan L. Clement and
Brent A. Shepherd and
Paul M. Bodily and
Sukhbat Tumur{-}Ochir and
Younghoon Gim and
Quinn Snell and
Mark J. Clement and
W. Evan Johnson},
title = {Parallel Pair-HMM {SNP} Detection},
booktitle = {26th {IEEE} International Parallel and Distributed Processing Symposium
Workshops {\&} PhD Forum, {IPDPS} 2012, Shanghai, China, May 21-25,
2012},
pages = {675--683},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/IPDPSW.2012.84},
doi = {10.1109/IPDPSW.2012.84},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementSBTGSCJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementCSJ11,
author = {Nathan L. Clement and
Mark J. Clement and
Quinn Snell and
W. Evan Johnson},
title = {Parallel Mapping Approaches for {GNUMAP}},
booktitle = {25th {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2011, Anchorage, Alaska, USA, 16-20 May 2011 - Workshop Proceedings},
pages = {435--443},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/IPDPS.2011.184},
doi = {10.1109/IPDPS.2011.184},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementCSJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SundbergCS10,
author = {Kenneth Sundberg and
Mark J. Clement and
Quinn Snell},
title = {On the use of cartographic projections in visualizing phylo-genetic
tree space},
journal = {Algorithms Mol. Biol.},
volume = {5},
pages = {26},
year = {2010},
url = {https://doi.org/10.1186/1748-7188-5-26},
doi = {10.1186/1748-7188-5-26},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SundbergCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClementSCHPGCJ10,
author = {Nathan L. Clement and
Quinn Snell and
Mark J. Clement and
Peter C. Hollenhorst and
Jahnvi Purwar and
Barbara J. Graves and
Bradley R. Cairns and
W. Evan Johnson},
title = {The {GNUMAP} algorithm: unbiased probabilistic mapping of oligonucleotides
from next-generation sequencing},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {38--45},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp614},
doi = {10.1093/BIOINFORMATICS/BTP614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClementSCHPGCJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClementGBCMOCSAR10,
author = {Kendell Clement and
Nathaniel Gustafson and
Amanda Berbert and
Hyrum Carroll and
Christopher Merris and
Ammon Olsen and
Mark J. Clement and
Quinn Snell and
Jared Allen and
Randall J. Roper},
title = {PathGen: a transitive gene pathway generator},
journal = {Bioinform.},
volume = {26},
number = {3},
pages = {423--425},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp661},
doi = {10.1093/BIOINFORMATICS/BTP661},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClementGBCMOCSAR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/EagarCS10,
author = {Mike Eagar and
Mark J. Clement and
Quinn Snell},
editor = {Hamid R. Arabnia and
Quoc{-}Nam Tran and
Rui Chang and
Matthew He and
Andy Marsh and
Ashu M. G. Solo and
Jack Y. Yang},
title = {Spatially Indexing Sequences using Hashes},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2010, July 12-15, 2010, Las Vegas Nevada, USA,
2 Volumes},
pages = {811--814},
publisher = {{CSREA} Press},
year = {2010},
timestamp = {Mon, 06 Dec 2010 13:28:59 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/EagarCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/OlsonCS10,
author = {Lukas Olson and
Mark J. Clement and
Quinn Snell},
editor = {Hamid R. Arabnia and
Quoc{-}Nam Tran and
Rui Chang and
Matthew He and
Andy Marsh and
Ashu M. G. Solo and
Jack Y. Yang},
title = {The Impact of Equally-Optimal Pairwise Alignments},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2010, July 12-15, 2010, Las Vegas Nevada, USA,
2 Volumes},
pages = {870--872},
publisher = {{CSREA} Press},
year = {2010},
timestamp = {Mon, 06 Dec 2010 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/OlsonCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/CarrollTKSSC09,
author = {Hyrum Carroll and
Adam R. Teichert and
Jonathan Krein and
Kenneth Sundberg and
Quinn Snell and
Mark J. Clement},
title = {An open source phylogenetic search and alignment package},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {5},
number = {3},
pages = {349--364},
year = {2009},
url = {https://doi.org/10.1504/IJBRA.2009.026424},
doi = {10.1504/IJBRA.2009.026424},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/CarrollTKSSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/CarrollCSM09,
author = {Hyrum Carroll and
Mark J. Clement and
Quinn Snell and
David A. McClellan},
title = {ChemAlign: Biologically Relevant Multiple Sequence Alignment Using
Physicochemical Properties},
booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings},
pages = {70--73},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBM.2009.75},
doi = {10.1109/BIBM.2009.75},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/CarrollCSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/OviattCSSAR09,
author = {David Oviatt and
Mark J. Clement and
Quinn Snell and
Kenneth Sundberg and
Jared Allen and
Randall J. Roper},
editor = {Hamid R. Arabnia and
Mary Qu Yang},
title = {Inferring Gene Regulatory Networks from Asynchronous Microarray Data},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2009, July 13-16, 2009, Las Vegas Nevada, USA,
2 Volumes},
pages = {142--147},
publisher = {{CSREA} Press},
year = {2009},
timestamp = {Wed, 28 Oct 2009 10:44:56 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/OviattCSSAR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/OConnorSCCS09,
author = {Timothy O'Connor and
Kenneth Sundberg and
Hyrum Carroll and
Mark J. Clement and
Quinn Snell},
editor = {Hamid R. Arabnia and
Mary Qu Yang},
title = {Analysis of Long Branch Extraction},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2009, July 13-16, 2009, Las Vegas Nevada, USA,
2 Volumes},
pages = {489--495},
publisher = {{CSREA} Press},
year = {2009},
timestamp = {Fri, 27 Nov 2009 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/OConnorSCCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SundbergCS09,
author = {Kenneth Sundberg and
Mark J. Clement and
Quinn Snell},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Visualizing Phylogenetic Treespace Using Cartographic Projections},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {321--332},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_27},
doi = {10.1007/978-3-642-04241-6\_27},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SundbergCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/SundbergOCCS08,
author = {Kenneth Sundberg and
Timothy O'Connor and
Hyrum Carroll and
Mark J. Clement and
Quinn Snell},
title = {Parsimony accelerated Maximum Likelihood searches},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {1},
number = {1},
pages = {74--87},
year = {2008},
url = {https://doi.org/10.1504/IJCBDD.2008.018711},
doi = {10.1504/IJCBDD.2008.018711},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/SundbergOCCS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/SundbergEWSC08,
author = {Kenneth Sundberg and
Daniel Ence and
Daniel Wilcox and
Quinn Snell and
Mark J. Clement},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray
Data},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {68--71},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Wed, 08 Jul 2009 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/SundbergEWSC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/SundbergCSC08,
author = {Kenneth Sundberg and
Hyrum Carroll and
Quinn Snell and
Mark J. Clement},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Incomparability of Results Between Phylogenetic Search Programs},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {81--84},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Wed, 08 Jul 2009 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/SundbergCSC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarrollBOECSM07,
author = {Hyrum Carroll and
Wesley A. Beckstead and
Timothy O'Connor and
Mark T. W. Ebbert and
Mark J. Clement and
Quinn Snell and
David A. McClellan},
title = {{DNA} reference alignment benchmarks based on tertiary structure of
encoded proteins},
journal = {Bioinform.},
volume = {23},
number = {19},
pages = {2648--2649},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm389},
doi = {10.1093/BIOINFORMATICS/BTM389},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarrollBOECSM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/EbbertBOCM07,
author = {Mark T. W. Ebbert and
Wesley A. Beckstead and
Timothy O'Connor and
Mark J. Clement and
David A. McClellan},
title = {Pharmacogenomics: analysing SNPs in the {CYP2D6} gene using amino
acid properties},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {3},
number = {4},
pages = {471--479},
year = {2007},
url = {https://doi.org/10.1504/IJBRA.2007.015415},
doi = {10.1504/IJBRA.2007.015415},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/EbbertBOCM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/CarrollRCS07,
author = {Hyrum Carroll and
Perry G. Ridge and
Mark J. Clement and
Quinn Snell},
title = {Phylogenies scores for exhaustive searches and parsimony scores searches},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {3},
number = {4},
pages = {493--503},
year = {2007},
url = {https://doi.org/10.1504/IJBRA.2007.015417},
doi = {10.1504/IJBRA.2007.015417},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/CarrollRCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/SundbergOCCS07,
author = {Kenneth Sundberg and
Timothy O'Connor and
Hyrum Carroll and
Mark J. Clement and
Quinn Snell},
title = {Using Parsimony to Guide Maximum Likelihood Searches},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {774--779},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375648},
doi = {10.1109/BIBE.2007.4375648},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/SundbergOCCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fmcad/RungtaCMRCS07,
author = {Neha Rungta and
Hyrum Carroll and
Eric G. Mercer and
Randall J. Roper and
Mark J. Clement and
Quinn Snell},
title = {Analyzing Gene Relationships for Down Syndrome with Labeled Transition
Graphs},
booktitle = {Formal Methods in Computer-Aided Design, 7th International Conference,
{FMCAD} 2007, Austin, Texas, USA, November 11-14, 2007, Proceedings},
pages = {216--219},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/FAMCAD.2007.24},
doi = {10.1109/FAMCAD.2007.24},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fmcad/RungtaCMRCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/MechamCSFSC06,
author = {Jesse Mecham and
Mark J. Clement and
Quinn Snell and
Todd Freestone and
Kevin D. Seppi and
Keith A. Crandall},
title = {Jumpstarting phylogenetic analysis},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {2},
number = {1},
pages = {19--35},
year = {2006},
url = {https://doi.org/10.1504/IJBRA.2006.009191},
doi = {10.1504/IJBRA.2006.009191},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/MechamCSFSC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/RidgeCSCS06,
author = {Perry G. Ridge and
Hyrum Carroll and
Dan Sneddon and
Mark J. Clement and
Quinn Snell},
title = {Large Grain Size Stochastic Optimization Alignment},
booktitle = {Sixth {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2006), 16-18 October 2006, Arlington, Virginia, {USA}},
pages = {127--134},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/BIBE.2006.253325},
doi = {10.1109/BIBE.2006.253325},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/RidgeCSCS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cic/DeccioCS04,
author = {Casey T. Deccio and
Mark J. Clement and
Quinn Snell},
editor = {Brian J. d'Auriol},
title = {A Survivable Multi-agent Approach to Network Routing},
booktitle = {Proceedings of the International Conference on Communications in Computing,
{CIC} '04, June 21-24, 2004, Las Vegas, Nevada, {USA}},
pages = {9--13},
publisher = {{CSREA} Press},
year = {2004},
timestamp = {Thu, 23 Dec 2004 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cic/DeccioCS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cic/BroadbentDC04,
author = {Reid Broadbent and
Casey T. Deccio and
Mark J. Clement},
editor = {Brian J. d'Auriol},
title = {Temporal Difference Learning in Network Routing},
booktitle = {Proceedings of the International Conference on Communications in Computing,
{CIC} '04, June 21-24, 2004, Las Vegas, Nevada, {USA}},
pages = {14--20},
publisher = {{CSREA} Press},
year = {2004},
timestamp = {Thu, 23 Dec 2004 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cic/BroadbentDC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipccc/BallCHSD04,
author = {Robert Ball and
Mark J. Clement and
Feng Huang and
Quinn Snell and
Casey T. Deccio},
title = {Aggressive telecommunications overbooking ratios},
booktitle = {Proceedings of the 23rd {IEEE} International Performance Computing
and Communications Conference, {IPCCC} 2004, April 15-17, 2004, Phoenix,
Arizona, {USA}},
pages = {31--38},
publisher = {{IEEE}},
year = {2004},
url = {https://doi.org/10.1109/PCCC.2004.1394937},
doi = {10.1109/PCCC.2004.1394937},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipccc/BallCHSD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/SnellTEC02,
author = {Quinn Snell and
Kevin Tew and
Joseph J. Ekstrom and
Mark J. Clement},
title = {An Enterprise-Based Grid Resource Management System},
booktitle = {11th {IEEE} International Symposium on High Performance Distributed
Computing {(HPDC-11} 2002), 23-26 July 2002, Edinburgh, Scotland,
{UK}},
pages = {83},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/HPDC.2002.1029906},
doi = {10.1109/HPDC.2002.1029906},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/SnellTEC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementSWPC02,
author = {Mark J. Clement and
Quinn Snell and
Peter Walker and
David Posada and
Keith A. Crandall},
title = {{TCS:} Estimating Gene Genealogies},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1016585},
doi = {10.1109/IPDPS.2002.1016585},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementSWPC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jsspp/SnellCJ02,
author = {Quinn Snell and
Mark J. Clement and
David B. Jackson},
editor = {Dror G. Feitelson and
Larry Rudolph and
Uwe Schwiegelshohn},
title = {Preemption Based Backfill},
booktitle = {Job Scheduling Strategies for Parallel Processing, 8th International
Workshop, {JSSPP} 2002, Edinburgh, Scotland, UK, July 24, 2002, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2537},
pages = {24--37},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-36180-4\_2},
doi = {10.1007/3-540-36180-4\_2},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/jsspp/SnellCJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cluster/TurgeonSC01,
author = {Andr{\'{e}} Turgeon and
Quinn Snell and
Mark J. Clement},
title = {Object Placement Using Performance Surfaces},
journal = {Clust. Comput.},
volume = {4},
number = {3},
pages = {263--273},
year = {2001},
url = {https://doi.org/10.1023/A:1011406826169},
doi = {10.1023/A:1011406826169},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cluster/TurgeonSC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/JardineSC01,
author = {John Jardine and
Quinn Snell and
Mark J. Clement},
title = {Livelock Avoidance for Meta-Schedulers},
booktitle = {10th {IEEE} International Symposium on High Performance Distributed
Computing {(HPDC-10} 2001), 7-9 August 2001, San Francisco, CA, {USA}},
pages = {141--146},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/HPDC.2001.945184},
doi = {10.1109/HPDC.2001.945184},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/JardineSC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jsspp/JacksonSC01,
author = {David B. Jackson and
Quinn Snell and
Mark J. Clement},
editor = {Dror G. Feitelson and
Larry Rudolph},
title = {Core Algorithms of the Maui Scheduler},
booktitle = {Job Scheduling Strategies for Parallel Processing, 7th International
Workshop, {JSSPP} 2001, Cambridge, MA, USA, June 16, 2001, Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {2221},
pages = {87--102},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45540-X\_6},
doi = {10.1007/3-540-45540-X\_6},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/jsspp/JacksonSC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mascots/LiHC01,
author = {Zhi Li and
John Higgins and
Mark J. Clement},
title = {Performance of Finite Field Arithmetic in an Elliptic Curve Cryptosystem},
booktitle = {9th International Workshop on Modeling, Analysis, and Simulation of
Computer and Telecommunication Systems {(MASCOTS} 2001), 15-18 August
2001, Cincinnati, OH, {USA}},
pages = {249},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/MASCOT.2001.948875},
doi = {10.1109/MASCOT.2001.948875},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mascots/LiHC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sacmat/AkkerSC01,
author = {Ty van den Akker and
Quinn Snell and
Mark J. Clement},
editor = {Ravi S. Sandhu and
Trent Jaeger},
title = {The YGuard access control model: set-based access control},
booktitle = {6th {ACM} Symposium on Access Control Models and Technologies, {SACMAT}
2001, Litton-TASC, Chantilly, Virginia, USA, May 3-4, 2001},
pages = {75--84},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/373256.373268},
doi = {10.1145/373256.373268},
timestamp = {Tue, 09 Feb 2021 08:50:30 +0100},
biburl = {https://dblp.org/rec/conf/sacmat/AkkerSC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/TurgeonSC00,
author = {Andr{\'{e}} Turgeon and
Quinn Snell and
Mark J. Clement},
title = {Application Placement using Performance Surfaces},
booktitle = {Proceedings of the Ninth {IEEE} International Symposium on High Performance
Distributed Computing, HPDC'00, Pittsburgh, Pennsylvania, USA, August
1-4, 2000},
pages = {229--236},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/HPDC.2000.868654},
doi = {10.1109/HPDC.2000.868654},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/TurgeonSC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jsspp/SnellCJG00,
author = {Quinn Snell and
Mark J. Clement and
David B. Jackson and
Chad Gregory},
editor = {Dror G. Feitelson and
Larry Rudolph},
title = {The Performance Impact of Advance Reservation Meta-scheduling},
booktitle = {Job Scheduling Strategies for Parallel Processing, {IPDPS} 2000 Workshop,
{JSSPP} 2000, Cancun, Mexico, May 1, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1911},
pages = {137--153},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-39997-6\_9},
doi = {10.1007/3-540-39997-6\_9},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/jsspp/SnellCJG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SnellWCM00,
author = {Quinn Snell and
Michael Whiting and
Mark J. Clement and
David McLaughlin},
editor = {Jed Donnelley},
title = {Parallel Phylogenetic Inference},
booktitle = {Proceedings Supercomputing 2000, November 4-10, 2000, Dallas, Texas,
{USA.} {IEEE} Computer Society, {CD-ROM}},
pages = {35},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/SC.2000.10062},
doi = {10.1109/SC.2000.10062},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/SnellWCM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scpe/SnellJC99,
author = {Quinn Snell and
Glenn Judd and
Mark J. Clement},
title = {The {DOGMA} Approach to Parallel and Distributed Computing},
journal = {Scalable Comput. Pract. Exp.},
volume = {2},
number = {2},
year = {1999},
url = {http://www.scpe.org/index.php/scpe/article/view/125},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/scpe/SnellJC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/ClementS99,
author = {Mark J. Clement and
Xian{-}He Sun},
title = {Editorial},
journal = {J. Supercomput.},
volume = {13},
number = {3},
pages = {247},
year = {1999},
url = {https://doi.org/10.1023/A:1008057201991},
doi = {10.1023/A:1008057201991},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/ClementS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/ClementJMF99,
author = {Mark J. Clement and
Glenn Judd and
Bryan S. Morse and
J. Kelly Flanagan},
title = {Performance Surface Prediction for WAN-Based Clusters},
journal = {J. Supercomput.},
volume = {13},
number = {3},
pages = {267--281},
year = {1999},
url = {https://doi.org/10.1023/A:1008057019892},
doi = {10.1023/A:1008057019892},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/ClementJMF99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcn/YuCSM99,
author = {Shuling Yu and
Mark J. Clement and
Quinn Snell and
Bryan S. Morse},
editor = {Peter M. A. Sloot and
Marian Bubak and
Alfons G. Hoekstra and
Louis O. Hertzberger},
title = {Parallel Algorithm and Processor Selection Based on Fuzzy Logic},
booktitle = {High-Performance Computing and Networking, 7th International Conference,
{HPCN} Europe 1999, Amsterdam, The Netherlands, April 12-14, 1999,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1593},
pages = {440--449},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/BFb0100605},
doi = {10.1007/BFB0100605},
timestamp = {Sun, 12 Nov 2023 02:09:00 +0100},
biburl = {https://dblp.org/rec/conf/hpcn/YuCSM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/ButlerCS99,
author = {Kevin Butler and
Mark J. Clement and
Quinn Snell},
title = {A Performance Broker for {CORBA}},
booktitle = {Proceedings of the Eighth {IEEE} International Symposium on High Performance
Distributed Computing, HPDC'99, Redondo Beach, California, USA, August
3-6, 1999},
pages = {19--26},
publisher = {{IEEE} Computer Society},
year = {1999},
url = {https://doi.org/10.1109/HPDC.1999.805278},
doi = {10.1109/HPDC.1999.805278},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/ButlerCS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/ClementSJW99,
author = {Mark J. Clement and
Quinn Snell and
Glenn Judd and
Michael Whiting},
title = {High Performance Phylogenetic Inference},
booktitle = {Proceedings of the Eighth {IEEE} International Symposium on High Performance
Distributed Computing, HPDC'99, Redondo Beach, California, USA, August
3-6, 1999},
pages = {335--336},
publisher = {{IEEE} Computer Society},
year = {1999},
url = {https://doi.org/10.1109/HPDC.1999.805315},
doi = {10.1109/HPDC.1999.805315},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/ClementSJW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementSJ99,
author = {Mark J. Clement and
Quinn Snell and
Glenn Judd},
editor = {Jos{\'{e}} D. P. Rolim and
Frank Mueller and
Albert Y. Zomaya and
Fikret Er{\c{c}}al and
Stephan Olariu and
Binoy Ravindran and
Jan Gustafsson and
Hiroaki Takada and
Ronald A. Olsson and
Laxmikant V. Kal{\'{e}} and
Peter H. Beckman and
Matthew Haines and
Hossam A. ElGindy and
Denis Caromel and
Serge Chaumette and
Geoffrey C. Fox and
Yi Pan and
Keqin Li and
Tao Yang and
G. Ghiola and
Gianni Conte and
Luigi V. Mancini and
Dominique M{\'{e}}ry and
Beverly A. Sanders and
Devesh Bhatt and
Viktor K. Prasanna},
title = {High Performance Computing for the Masses},
booktitle = {Parallel and Distributed Processing, 11 IPPS/SPDP'99 Workshops Held
in Conjunction with the 13th International Parallel Processing Symposium
and 10th Symposium on Parallel and Distributed Processing, San Juan,
Puerto Rico, USA, April 12-16, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1586},
pages = {781--796},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/BFb0097966},
doi = {10.1007/BFB0097966},
timestamp = {Mon, 22 Mar 2021 14:03:05 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementSJ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/java/JuddCSG99,
author = {Glenn Judd and
Mark J. Clement and
Quinn Snell and
Vladimir Getov},
editor = {Geoffrey C. Fox and
Klaus E. Schauser and
Marc Snir},
title = {Design Issues for Efficient Implementation of {MPI} in Java},
booktitle = {Proceedings of the {ACM} 1999 Conference on Java Grande, {JAVA} '99,
San Francisco, CA, USA, June 12-14, 1999},
pages = {58--65},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/304065.304097},
doi = {10.1145/304065.304097},
timestamp = {Tue, 06 Nov 2018 11:07:44 +0100},
biburl = {https://dblp.org/rec/conf/java/JuddCSG99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdpta/ClementSJA99,
author = {Mark J. Clement and
Quinn Snell and
David B. Jackson and
David Ashton},
editor = {Hamid R. Arabnia},
title = {High Performance Scheduling for Windows {NT}},
booktitle = {Proceedings of the International Conference on Parallel and Distributed
Processing Techniques and Applications, {PDPTA} 1999, June 28 - Junlly
1, 1999, Las Vegas, Nevada, {USA}},
pages = {525--531},
publisher = {{CSREA} Press},
year = {1999},
timestamp = {Thu, 23 Dec 2004 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pdpta/ClementSJA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/JuddCS98,
author = {Glenn Judd and
Mark J. Clement and
Quinn Snell},
title = {{DOGMA:} distributed object group metacomputing architecture},
journal = {Concurr. Pract. Exp.},
volume = {10},
number = {11-13},
pages = {977--983},
year = {1998},
url = {https://doi.org/10.1002/(SICI)1096-9128(199809/11)10:11/13\&\#60;977::AID-CPE400\&\#62;3.0.CO;2-H},
doi = {10.1002/(SICI)1096-9128(199809/11)10:11/13\&\#60;977::AID-CPE400\&\#62;3.0.CO;2-H},
timestamp = {Thu, 21 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/JuddCS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/ClementJPMF98,
author = {Mark J. Clement and
Glenn Judd and
Joy L. Peterson and
Bryan S. Morse and
J. Kelly Flanagan},
title = {Performance Surface Prediction for WAN-Based Clusters},
booktitle = {Thirty-First Annual Hawaii International Conference on System Sciences,
Kohala Coast, Hawaii, USA, January 6-9, 1998},
pages = {564--573},
publisher = {{IEEE} Computer Society},
year = {1998},
url = {https://doi.org/10.1109/HICSS.1998.649254},
doi = {10.1109/HICSS.1998.649254},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/ClementJPMF98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/JuddCS98,
author = {Glenn Judd and
Mark J. Clement and
Quinn Snell},
title = {The {DOGMA} Approach to High-Utilization Supercomputing},
booktitle = {Proceedings of the Seventh {IEEE} International Symposium on High
Performance Distributed Computing, {HPDC} '98, Chicago, Illinois,
USA, July 28-31, 1998},
pages = {64--70},
publisher = {{IEEE} Computer Society},
year = {1998},
url = {https://doi.org/10.1109/HPDC.1998.709957},
doi = {10.1109/HPDC.1998.709957},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/JuddCS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/ClementQ97,
author = {Mark J. Clement and
Michael J. Quinn},
title = {Automated Performance Prediction for Scalable Parallel Computing},
journal = {Parallel Comput.},
volume = {23},
number = {10},
pages = {1405--1420},
year = {1997},
url = {https://doi.org/10.1016/S0167-8191(97)00066-5},
doi = {10.1016/S0167-8191(97)00066-5},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/ClementQ97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/WilliamsC97,
author = {John Williams and
Mark J. Clement},
title = {Distributed Polyphonic Music Synthesis},
booktitle = {Proceedings of the 6th International Symposium on High Performance
Distributed Computing, {HPDC} '97, Portland, OR, USA, August 5-8,
1997},
pages = {20--29},
publisher = {{IEEE} Computer Society},
year = {1997},
url = {https://doi.org/10.1109/HPDC.1997.622359},
doi = {10.1109/HPDC.1997.622359},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/WilliamsC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/LeichtlCC97,
author = {Johann Leichtl and
Phyllis Crandall and
Mark J. Clement},
title = {Parallel Programming in Multi-Paradigm Clusters},
booktitle = {Proceedings of the 6th International Symposium on High Performance
Distributed Computing, {HPDC} '97, Portland, OR, USA, August 5-8,
1997},
pages = {326--335},
publisher = {{IEEE} Computer Society},
year = {1997},
url = {https://doi.org/10.1109/HPDC.1997.626438},
doi = {10.1109/HPDC.1997.626438},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/LeichtlCC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdpta/ClementMFWC97,
author = {Mark J. Clement and
Bryan S. Morse and
J. Kelly Flanagan and
Wei Wei and
Phyllis E. Crandall},
editor = {Hamid R. Arabnia},
title = {The Chordal Spoke {ATM} Interconnection Network},
booktitle = {Proceedings of the International Conference on Parallel and Distributed
Processing Techniques and Applications, {PDPTA} 1997, June 30 - July
3, 1997, Las Vegas, Nevada, {USA}},
pages = {1259--1267},
publisher = {{CSREA} Press},
year = {1997},
timestamp = {Tue, 20 Apr 2004 14:47:02 +0200},
biburl = {https://dblp.org/rec/conf/pdpta/ClementMFWC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/CrandallSC96,
author = {Phyllis Crandall and
Eranti V. Sumithasri and
Mark J. Clement},
title = {Performance Comparison of Desktop Multiprocessing and Workstation
Cluster Computing},
booktitle = {Proceedings of the 5th International Symposium on High Performance
Distributed Computing {(HPDC} '96), Syracuse, NY, USA, August 6-9,
1996},
pages = {272--281},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/HPDC.1996.546197},
doi = {10.1109/HPDC.1996.546197},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/CrandallSC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/SteedC96,
author = {Michael R. Steed and
Mark J. Clement},
title = {Performance Prediction of {PVM} Programs},
booktitle = {Proceedings of {IPPS} '96, The 10th International Parallel Processing
Symposium, April 15-19, 1996, Honolulu, Hawaii, {USA}},
pages = {803--807},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/IPPS.1996.508151},
doi = {10.1109/IPPS.1996.508151},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/SteedC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdpta/ClementFS96,
author = {Mark J. Clement and
J. Kelly Flanagan and
Michael R. Steed},
editor = {Hamid R. Arabnia},
title = {Cost Optimal Analysis for Workstation Clusters},
booktitle = {Proceedings of the International Conference on Parallel and Distributed
Processing Techniques and Applications, {PDPTA} 1996, August 9-11,
1996, Sunnyvale, California, {USA}},
pages = {1308--1318},
publisher = {{CSREA} Press},
year = {1996},
timestamp = {Tue, 02 Nov 2004 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pdpta/ClementFS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ClementSC96,
author = {Mark J. Clement and
Michael R. Steed and
Phyllis E. Crandall},
title = {Network Performance Modeling for {PVM} Clusters},
booktitle = {Proceedings of the 1996 {ACM/IEEE} Conference on Supercomputing, November
17-22, 1996, Pittsburgh, PA, {USA}},
pages = {6},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.ieeecomputersociety.org/10.1109/SC.1996.27},
doi = {10.1109/SC.1996.27},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/ClementSC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/ClementQ95,
author = {Mark J. Clement and
Michael J. Quinn},
title = {Overlapping Computations, Communications and {I/O} in parallel Sorting},
journal = {J. Parallel Distributed Comput.},
volume = {28},
number = {2},
pages = {162--172},
year = {1995},
url = {https://doi.org/10.1006/jpdc.1995.1097},
doi = {10.1006/JPDC.1995.1097},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jpdc/ClementQ95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/ClementQ95,
author = {Mark J. Clement and
Michael J. Quinn},
title = {Multivariate statistical techniques for parallel performance prediction},
booktitle = {28th Annual Hawaii International Conference on System Sciences (HICSS-28),
January 3-6, 1995, Kihei, Maui, Hawaii, {USA}},
pages = {446--455},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/HICSS.1995.375512},
doi = {10.1109/HICSS.1995.375512},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hicss/ClementQ95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ClementQ95,
author = {Mark J. Clement and
Michael J. Quinn},
title = {Symbolic performance prediction of scalable parallel programs},
booktitle = {Proceedings of {IPPS} '95, The 9th International Parallel Processing
Symposium, April 25-28, 1995, Santa Barbara, California, {USA}},
pages = {635--639},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/IPPS.1995.395881},
doi = {10.1109/IPPS.1995.395881},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ClementQ95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdpta/WeiCF95,
author = {Wei Wei and
Mark J. Clement and
J. Kelly Flanagan},
editor = {Hamid R. Arabnia},
title = {The Round Table {ATM} Interconnection Network},
booktitle = {Proceedings of the International Conference on Parallel and Distributed
Processing Techniques and Applications, {PDPTA} 1995, November 3-4,
1995, Georgia, {USA}},
pages = {445--454},
publisher = {{CSREA} Press},
year = {1995},
timestamp = {Mon, 09 Nov 2009 13:57:16 +0100},
biburl = {https://dblp.org/rec/conf/pdpta/WeiCF95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ClementQ93,
author = {Mark J. Clement and
Michael J. Quinn},
editor = {Bob Borchers and
Dona Crawford},
title = {Analytical performance prediction on multicomputers},
booktitle = {Proceedings Supercomputing '93, Portland, Oregon, USA, November 15-19,
1993},
pages = {886--894},
publisher = {{ACM}},
year = {1993},
url = {https://doi.org/10.1145/169627.169856},
doi = {10.1145/169627.169856},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/ClementQ93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spdp/RamanathanCC92,
author = {Gowri Ramanathan and
Mark J. Clement and
Phyllis Crandall},
title = {Hyperweave: {A} Fault-Tolerant Expandable Interconnection Network},
booktitle = {Proceedings of the Fourth {IEEE} Symposium on Parallel and Distributed
Processing, {SPDP} 1992, Arlington, Texas, USA, December 1-4, 1992},
pages = {479--482},
publisher = {{IEEE} Computer Society},
year = {1992},
url = {https://doi.org/10.1109/SPDP.1992.242707},
doi = {10.1109/SPDP.1992.242707},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/spdp/RamanathanCC92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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