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BibTeX records: François Coste
@article{DBLP:journals/bioinformatics/ButonCC23, author = {Nicolas Buton and Fran{\c{c}}ois Coste and Yann Le Cunff}, title = {Predicting enzymatic function of protein sequences with attention}, journal = {Bioinform.}, volume = {39}, number = {10}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad620}, doi = {10.1093/BIOINFORMATICS/BTAD620}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ButonCC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DennlerCBBT23, author = {Olivier Dennler and Fran{\c{c}}ois Coste and Samuel Blanquart and Catherine Belleann{\'{e}}e and Nathalie Th{\'{e}}ret}, title = {Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the {ADAMTS-TSL} family}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {8}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1011404}, doi = {10.1371/JOURNAL.PCBI.1011404}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/DennlerCBBT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/icgi/2023, editor = {Fran{\c{c}}ois Coste and Faissal Ouardi and Guillaume Rabusseau}, title = {International Conference on Grammatical Inference, {ICGI} 2023, 10-13 July 2023, Rabat, Morocco}, series = {Proceedings of Machine Learning Research}, volume = {217}, publisher = {{PMLR}}, year = {2023}, url = {http://proceedings.mlr.press/v217/}, timestamp = {Thu, 24 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TalibartC21, author = {Hugo Talibart and Fran{\c{c}}ois Coste}, title = {PPalign: optimal alignment of Potts models representing proteins with direct coupling information}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {317}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04222-4}, doi = {10.1186/S12859-021-04222-4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TalibartC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1908-00785, author = {Fran{\c{c}}ois Coste}, title = {Deep learning languages: a key fundamental shift from probabilities to weights?}, journal = {CoRR}, volume = {abs/1908.00785}, year = {2019}, url = {http://arxiv.org/abs/1908.00785}, eprinttype = {arXiv}, eprint = {1908.00785}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1908-00785.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/PyzikCD18, author = {Mateusz Pyzik and Fran{\c{c}}ois Coste and Witold Dyrka}, editor = {Olgierd Unold and Witold Dyrka and Wojciech Wieczorek}, title = {How to measure the topological quality of protein parse trees?}, booktitle = {Proceedings of the 14th International Conference on Grammatical Inference, {ICGI} 2018, Wroc{\l}aw, Poland, September 5-7, 2018}, series = {Proceedings of Machine Learning Research}, volume = {93}, pages = {118--138}, publisher = {{PMLR}}, year = {2018}, url = {http://proceedings.mlr.press/v93/pyzik19a.html}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/PyzikCD18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/CosteN18, author = {Fran{\c{c}}ois Coste and Jacques Nicolas}, editor = {Olgierd Unold and Witold Dyrka and Wojciech Wieczorek}, title = {Learning local substitutable context-free languages from positive examples in polynomial time and data by reduction}, booktitle = {Proceedings of the 14th International Conference on Grammatical Inference, {ICGI} 2018, Wroc{\l}aw, Poland, September 5-7, 2018}, series = {Proceedings of Machine Learning Research}, volume = {93}, pages = {155--168}, publisher = {{PMLR}}, year = {2018}, url = {http://proceedings.mlr.press/v93/coste19a.html}, timestamp = {Wed, 03 Apr 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/CosteN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1805-08630, author = {Witold Dyrka and Fran{\c{c}}ois Coste and Juliette Talibart}, title = {Estimating probabilistic context-free grammars for proteins using contact map constraints}, journal = {CoRR}, volume = {abs/1805.08630}, year = {2018}, url = {http://arxiv.org/abs/1805.08630}, eprinttype = {arXiv}, eprint = {1805.08630}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1805-08630.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GaliezMCB16, author = {Clovis Galiez and Christophe N. Magnan and Fran{\c{c}}ois Coste and Pierre Baldi}, title = {VIRALpro: a tool to identify viral capsid and tail sequences}, journal = {Bioinform.}, volume = {32}, number = {9}, pages = {1405--1407}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btv727}, doi = {10.1093/BIOINFORMATICS/BTV727}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GaliezMCB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/DyrkaCUCK16, author = {Witold Dyrka and Fran{\c{c}}ois Coste and Olgierd Unold and Lukasz Culer and Agnieszka Kaczmarek}, title = {How to measure the topological quality of protein grammars?}, journal = {CoRR}, volume = {abs/1611.10078}, year = {2016}, url = {http://arxiv.org/abs/1611.10078}, eprinttype = {arXiv}, eprint = {1611.10078}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/DyrkaCUCK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaliezC15, author = {Clovis Galiez and Fran{\c{c}}ois Coste}, title = {Amplitude spectrum distance: measuring the global shape divergence of protein fragments}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {256:1--256:16}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0693-y}, doi = {10.1186/S12859-015-0693-Y}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GaliezC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icfca/CosteGGNT14, author = {Fran{\c{c}}ois Coste and Ga{\"{e}}lle Garet and Agn{\`{e}}s Groisillier and Jacques Nicolas and Thierry Tonon}, editor = {Cynthia Vera Glodeanu and Mehdi Kaytoue and Christian Sacarea}, title = {Automated Enzyme Classification by Formal Concept Analysis}, booktitle = {Formal Concept Analysis - 12th International Conference, {ICFCA} 2014, Cluj-Napoca, Romania, June 10-13, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8478}, pages = {235--250}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-07248-7\_17}, doi = {10.1007/978-3-319-07248-7\_17}, timestamp = {Thu, 14 Oct 2021 10:21:54 +0200}, biburl = {https://dblp.org/rec/conf/icfca/CosteGGNT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/CosteGN14, author = {Fran{\c{c}}ois Coste and Ga{\"{e}}lle Garet and Jacques Nicolas}, editor = {Alexander Clark and Makoto Kanazawa and Ryo Yoshinaka}, title = {A bottom-up efficient algorithm learning substitutable languages from positive examples}, booktitle = {Proceedings of the 12th International Conference on Grammatical Inference, {ICGI} 2014, Kyoto, Japan, September 17-19, 2014}, series = {{JMLR} Workshop and Conference Proceedings}, volume = {34}, pages = {49--63}, publisher = {JMLR.org}, year = {2014}, url = {http://proceedings.mlr.press/v34/coste14a.html}, timestamp = {Wed, 29 May 2019 08:41:46 +0200}, biburl = {https://dblp.org/rec/conf/icgi/CosteGN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BretaudeauCHGCSRCSP13, author = {Anthony Bretaudeau and Fran{\c{c}}ois Coste and Florian Humily and Laurence Garczarek and Gildas Le Corguill{\'{e}} and Christophe Six and Morgane Ratin and Olivier Collin and Wendy M. Schluchter and Fr{\'{e}}d{\'{e}}ric Partensky}, title = {CyanoLyase: a database of phycobilin lyase sequences, motifs and functions}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {396--401}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1091}, doi = {10.1093/NAR/GKS1091}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BretaudeauCHGCSRCSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/CarrascosaCGL12, author = {Rafael Carrascosa and Fran{\c{c}}ois Coste and Matthias Gall{\'{e}} and Gabriel G. Infante L{\'{o}}pez}, title = {Searching for smallest grammars on large sequences and application to {DNA}}, journal = {J. Discrete Algorithms}, volume = {11}, pages = {62--72}, year = {2012}, url = {https://doi.org/10.1016/j.jda.2011.04.006}, doi = {10.1016/J.JDA.2011.04.006}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jda/CarrascosaCGL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:journals/jmlr/CosteGN12, author = {Fran{\c{c}}ois Coste and Ga{\"{e}}lle Garet and Jacques Nicolas}, editor = {Jeffrey Heinz and Colin de la Higuera and Tim Oates}, title = {Locally Substitutable Languages for Enhanced Inductive Leaps}, booktitle = {Proceedings of the Eleventh International Conference on Grammatical Inference, {ICGI} 2012, University of Maryland, College Park, USA, September 5-8, 2012}, series = {{JMLR} Proceedings}, volume = {21}, pages = {97--111}, publisher = {JMLR.org}, year = {2012}, url = {http://proceedings.mlr.press/v21/coste12a.html}, timestamp = {Sun, 16 Oct 2022 14:19:56 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/CosteGN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithms/CarrascosaCGL11, author = {Rafael Carrascosa and Fran{\c{c}}ois Coste and Matthias Gall{\'{e}} and Gabriel G. Infante L{\'{o}}pez}, title = {The Smallest Grammar Problem as Constituents Choice and Minimal Grammar Parsing}, journal = {Algorithms}, volume = {4}, number = {4}, pages = {262--284}, year = {2011}, url = {https://doi.org/10.3390/a4040262}, doi = {10.3390/A4040262}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithms/CarrascosaCGL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lata/CarrascosaCGL10, author = {Rafael Carrascosa and Fran{\c{c}}ois Coste and Matthias Gall{\'{e}} and Gabriel G. Infante L{\'{o}}pez}, editor = {Adrian{-}Horia Dediu and Henning Fernau and Carlos Mart{\'{\i}}n{-}Vide}, title = {Choosing Word Occurrences for the Smallest Grammar Problem}, booktitle = {Language and Automata Theory and Applications, 4th International Conference, {LATA} 2010, Trier, Germany, May 24-28, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6031}, pages = {154--165}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-13089-2\_13}, doi = {10.1007/978-3-642-13089-2\_13}, timestamp = {Tue, 14 May 2019 10:00:41 +0200}, biburl = {https://dblp.org/rec/conf/lata/CarrascosaCGL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijfcs/GallePC09, author = {Matthias Gall{\'{e}} and Pierre Peterlongo and Fran{\c{c}}ois Coste}, title = {In-Place Update of Suffix Array while Recoding Words}, journal = {Int. J. Found. Comput. Sci.}, volume = {20}, number = {6}, pages = {1025--1045}, year = {2009}, url = {https://doi.org/10.1142/S0129054109007029}, doi = {10.1142/S0129054109007029}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijfcs/GallePC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/stringology/GallePC08, author = {Matthias Gall{\'{e}} and Pierre Peterlongo and Fran{\c{c}}ois Coste}, editor = {Jan Holub and Jan Zd{\'{a}}rek}, title = {In-place Update of Suffix Array while Recoding Words}, booktitle = {Proceedings of the Prague Stringology Conference 2008, Prague, Czech Republic, September 1-3, 2008}, pages = {54--67}, publisher = {Prague Stringology Club, Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague}, year = {2008}, url = {http://www.stringology.org/event/2008/p06.html}, timestamp = {Wed, 10 Feb 2021 08:42:20 +0100}, biburl = {https://dblp.org/rec/conf/stringology/GallePC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/icgi/2008, editor = {Alexander Clark and Fran{\c{c}}ois Coste and Laurent Miclet}, title = {Grammatical Inference: Algorithms and Applications, 9th International Colloquium, {ICGI} 2008, Saint-Malo, France, September 22-24, 2008, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5278}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-88009-7}, doi = {10.1007/978-3-540-88009-7}, isbn = {978-3-540-88008-0}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/2008.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aicom/StarkieCZ05, author = {Bradford Starkie and Fran{\c{c}}ois Coste and Menno van Zaanen}, title = {Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning Competition}, journal = {{AI} Commun.}, volume = {18}, number = {2}, pages = {93--115}, year = {2005}, url = {http://content.iospress.com/articles/ai-communications/aic337}, timestamp = {Fri, 15 May 2015 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aicom/StarkieCZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ecml/CosteK05, author = {Fran{\c{c}}ois Coste and Goulven Kerbellec}, editor = {Jo{\~{a}}o Gama and Rui Camacho and Pavel Brazdil and Al{\'{\i}}pio Jorge and Lu{\'{\i}}s Torgo}, title = {A Similar Fragments Merging Approach to Learn Automata on Proteins}, booktitle = {Machine Learning: {ECML} 2005, 16th European Conference on Machine Learning, Porto, Portugal, October 3-7, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3720}, pages = {522--529}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11564096\_50}, doi = {10.1007/11564096\_50}, timestamp = {Wed, 24 Mar 2021 17:12:00 +0100}, biburl = {https://dblp.org/rec/conf/ecml/CosteK05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/StarkieCZ04, author = {Bradford Starkie and Fran{\c{c}}ois Coste and Menno van Zaanen}, editor = {Georgios Paliouras and Yasubumi Sakakibara}, title = {The Omphalos Context-Free Grammar Learning Competition}, booktitle = {Grammatical Inference: Algorithms and Applications, 7th International Colloquium, {ICGI} 2004, Athens, Greece, October 11-13, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3264}, pages = {16--27}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30195-0\_3}, doi = {10.1007/978-3-540-30195-0\_3}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/StarkieCZ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/AbelaCS04, author = {John Abela and Fran{\c{c}}ois Coste and Sandro Spina}, editor = {Georgios Paliouras and Yasubumi Sakakibara}, title = {Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent {DFA}}, booktitle = {Grammatical Inference: Algorithms and Applications, 7th International Colloquium, {ICGI} 2004, Athens, Greece, October 11-13, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3264}, pages = {28--39}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30195-0\_4}, doi = {10.1007/978-3-540-30195-0\_4}, timestamp = {Wed, 17 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/AbelaCS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/CosteFKH04, author = {Fran{\c{c}}ois Coste and Daniel Fredouille and Christopher Kermorvant and Colin de la Higuera}, editor = {Georgios Paliouras and Yasubumi Sakakibara}, title = {Introducing Domain and Typing Bias in Automata Inference}, booktitle = {Grammatical Inference: Algorithms and Applications, 7th International Colloquium, {ICGI} 2004, Athens, Greece, October 11-13, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3264}, pages = {115--126}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30195-0\_11}, doi = {10.1007/978-3-540-30195-0\_11}, timestamp = {Wed, 17 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icgi/CosteFKH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ecml/CosteF03, author = {Fran{\c{c}}ois Coste and Daniel Fredouille}, editor = {Nada Lavrac and Dragan Gamberger and Ljupco Todorovski and Hendrik Blockeel}, title = {Unambiguous Automata Inference by Means of State-Merging Methods}, booktitle = {Machine Learning: {ECML} 2003, 14th European Conference on Machine Learning, Cavtat-Dubrovnik, Croatia, September 22-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2837}, pages = {60--71}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39857-8\_8}, doi = {10.1007/978-3-540-39857-8\_8}, timestamp = {Tue, 14 May 2019 10:00:54 +0200}, biburl = {https://dblp.org/rec/conf/ecml/CosteF03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/CosteF00, author = {Fran{\c{c}}ois Coste and Daniel Fredouille}, editor = {Arlindo L. Oliveira}, title = {Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic Automata}, booktitle = {Grammatical Inference: Algorithms and Applications, 5th International Colloquium, {ICGI} 2000, Lisbon, Portugal, September 11-13, 2000, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1891}, pages = {25--38}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/978-3-540-45257-7\_3}, doi = {10.1007/978-3-540-45257-7\_3}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/icgi/CosteF00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ecml/CosteN98, author = {Fran{\c{c}}ois Coste and Jacques Nicolas}, editor = {Claire Nedellec and C{\'{e}}line Rouveirol}, title = {Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of States}, booktitle = {Machine Learning: ECML-98, 10th European Conference on Machine Learning, Chemnitz, Germany, April 21-23, 1998, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1398}, pages = {37--42}, publisher = {Springer}, year = {1998}, url = {https://doi.org/10.1007/BFb0026669}, doi = {10.1007/BFB0026669}, timestamp = {Tue, 14 May 2019 10:00:54 +0200}, biburl = {https://dblp.org/rec/conf/ecml/CosteN98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icgi/CosteN98, author = {Fran{\c{c}}ois Coste and Jacques Nicolas}, editor = {Vasant G. Honavar and Giora Slutzki}, title = {How Considering Incompatible State Mergings May Reduce the {DFA} Induction Search Tree}, booktitle = {Grammatical Inference, 4th International Colloquium, ICGI-98, Ames, Iowa, USA, July 12-14, 1998, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1433}, pages = {199--210}, publisher = {Springer}, year = {1998}, url = {https://doi.org/10.1007/BFb0054076}, doi = {10.1007/BFB0054076}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/icgi/CosteN98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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