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ORCIDBibTeX records: Mélanie Courtot
@article{DBLP:journals/biomedsem/XuJGJPC23,
author = {Fuqi Xu and
Nick S. Juty and
Carole A. Goble and
Simon Jupp and
Helen E. Parkinson and
M{\'{e}}lanie Courtot},
title = {Features of a {FAIR} vocabulary},
journal = {J. Biomed. Semant.},
volume = {14},
number = {1},
pages = {6},
year = {2023},
url = {https://doi.org/10.1186/s13326-023-00286-8},
doi = {10.1186/S13326-023-00286-8},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/XuJGJPC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiyanageBDEFGHJ22,
author = {Isuru Udara Liyanage and
Tony Burdett and
Bert Droesbeke and
Karoly Erdos and
Rolando Fernandez and
Alasdair J. G. Gray and
Muhammad Haseeb and
Simon Jupp and
Flavia Penim and
Cyril Pommier and
Philippe Rocca{-}Serra and
M{\'{e}}lanie Courtot and
Frederik Coppens},
title = {{ELIXIR} biovalidator for semantic validation of life science metadata},
journal = {Bioinform.},
volume = {38},
number = {11},
pages = {3141--3142},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac195},
doi = {10.1093/BIOINFORMATICS/BTAC195},
timestamp = {Wed, 27 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiyanageBDEFGHJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CourtotGLXB22,
author = {M{\'{e}}lanie Courtot and
Dipayan Gupta and
Isuru Udara Liyanage and
Fuqi Xu and
Tony Burdett},
title = {BioSamples database: FAIRer samples metadata to accelerate research
data management},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1500--1507},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1046},
doi = {10.1093/NAR/GKAB1046},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CourtotGLXB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/XuJGJPC22,
author = {Fuqi Xu and
Nick S. Juty and
Carole A. Goble and
Simon Jupp and
Helen E. Parkinson and
M{\'{e}}lanie Courtot},
editor = {Katy Wolstencroft and
Andrea Splendiani and
M. Scott Marshall and
Chris Baker and
Andra Waagmeester and
Marco Roos and
Rutger A. Vos and
Rianne Fijten and
Leyla Jael Castro},
title = {Features of a {FAIR} Vocabulary},
booktitle = {13th International Conference on Semantic Web Applications and Tools
for Health Care and Life Sciences, {SWAT4HCLS} 2022, Virtual Event,
Leiden, The Netherlands, January 10th to 14th, 2022},
series = {{CEUR} Workshop Proceedings},
volume = {3127},
pages = {118--148},
publisher = {CEUR-WS.org},
year = {2022},
url = {https://ceur-ws.org/Vol-3127/paper-15.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/XuJGJPC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JacksonMOVBBCCD21,
author = {Rebecca C. Jackson and
Nicolas Matentzoglu and
James A. Overton and
Randi Vita and
James P. Balhoff and
Pier Luigi Buttigieg and
Seth Carbon and
M{\'{e}}lanie Courtot and
Alexander D. Diehl and
Damion M. Dooley and
William D. Duncan and
Nomi L. Harris and
Melissa A. Haendel and
Suzanna E. Lewis and
Darren A. Natale and
David Osumi{-}Sutherland and
Alan Ruttenberg and
Lynn M. Schriml and
Barry Smith and
Christian J. Stoeckert Jr. and
Nicole A. Vasilevsky and
Ramona L. Walls and
Jie Zheng and
Christopher J. Mungall and
Bjoern Peters},
title = {{OBO} Foundry in 2021: operationalizing open data principles to evaluate
ontologies},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab069},
doi = {10.1093/DATABASE/BAAB069},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JacksonMOVBBCCD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisonAAABBCF21,
author = {Peter W. Harrison and
Alisha Ahamed and
Raheela Aslam and
Blaise T. F. Alako and
Josephine Burgin and
Nicola Buso and
M{\'{e}}lanie Courtot and
Jun Fan and
Dipayan Gupta and
Muhammad Haseeb and
Sam Holt and
Talal Ibrahim and
Eugene Ivanov and
Suran Jayathilaka and
Vishnukumar Balavenkataraman Kadhirvelu and
Manish Kumar and
Rodrigo Lopez and
Simon Kay and
Rasko Leinonen and
Xin Liu and
Colman O'Cathail and
Amir Pakseresht and
Young Mi Park and
Stephane Pesant and
Nadim Rahman and
Jeena Rajan and
Alexey Sokolov and
Senthilnathan Vijayaraja and
Zahra Waheed and
Ahmad Zyoud and
Tony Burdett and
Guy Cochrane},
title = {The European Nucleotide Archive in 2020},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D82--D85},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1028},
doi = {10.1093/NAR/GKAA1028},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HarrisonAAABBCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/JacobsenAJBCCCC20,
author = {Annika Jacobsen and
Ricardo de Miranda Azevedo and
Nick S. Juty and
Dominique Batista and
Simon J. Coles and
Ronald Cornet and
M{\'{e}}lanie Courtot and
Merc{\`{e}} Crosas and
Michel Dumontier and
Chris T. A. Evelo and
Carole A. Goble and
Giancarlo Guizzardi and
Karsten Kryger Hansen and
Ali Hasnain and
Kristina M. Hettne and
Jaap Heringa and
Rob W. W. Hooft and
Melanie Imming and
Keith G. Jeffery and
Rajaram Kaliyaperumal and
Martijn G. Kersloot and
Christine R. Kirkpatrick and
Tobias Kuhn and
Ignasi Labastida and
Barbara Magagna and
Peter McQuilton and
Natalie Meyers and
Annalisa Montesanti and
Mirjam van Reisen and
Philippe Rocca{-}Serra and
Robert Pergl and
Susanna{-}Assunta Sansone and
Luiz Olavo Bonino da Silva Santos and
Juliane Schneider and
George O. Strawn and
Mark Thompson and
Andra Waagmeester and
Tobias Weigel and
Mark D. Wilkinson and
Egon L. Willighagen and
Peter Wittenburg and
Marco Roos and
Barend Mons and
Erik Schultes},
title = {{FAIR} Principles: Interpretations and Implementation Considerations},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {10--29},
year = {2020},
url = {https://doi.org/10.1162/dint\_r\_00024},
doi = {10.1162/DINT\_R\_00024},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/JacobsenAJBCCCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CourtotCFVGRHWP19,
author = {M{\'{e}}lanie Courtot and
Luca Cherubin and
Adam Faulconbridge and
Daniel Vaughan and
Matthew Green and
David Richardson and
Peter W. Harrison and
Patricia L. Whetzel and
Helen E. Parkinson and
Tony Burdett},
title = {BioSamples database: an updated sample metadata hub},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1172--D1178},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1061},
doi = {10.1093/NAR/GKY1061},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CourtotCFVGRHWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HarmseCRMOJ19,
author = {Henriette Harmse and
M{\'{e}}lanie Courtot and
Warren Read and
Nicolas Matentzoglu and
David Osumi{-}Sutherland and
Simon Jupp},
editor = {Alexander D. Diehl and
William D. Duncan and
Gloria Sanso},
title = {Where Does an Ontology Start?},
booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology
{(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2931},
pages = {1},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_44.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HarmseCRMOJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Osumi-Sutherland18,
author = {David Osumi{-}Sutherland and
Enrico Ponta and
M{\'{e}}lanie Courtot and
Helen E. Parkinson and
Laura Badi},
title = {Using {OWL} reasoning to support the generation of novel gene sets
for enrichment analysis},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {10:1--10:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0175-z},
doi = {10.1186/S13326-018-0175-Z},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Osumi-Sutherland18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Osumi-Sutherland17,
author = {David Osumi{-}Sutherland and
M{\'{e}}lanie Courtot and
James P. Balhoff and
Christopher J. Mungall},
title = {Dead simple {OWL} design patterns},
journal = {J. Biomed. Semant.},
volume = {8},
number = {1},
pages = {18:1--18:7},
year = {2017},
url = {https://doi.org/10.1186/s13326-017-0126-0},
doi = {10.1186/S13326-017-0126-0},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Osumi-Sutherland17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OngXZLLZMCRH17,
author = {Edison Ong and
Zuoshuang Xiang and
Bin Zhao and
Yue Liu and
Yu Lin and
Jie Zheng and
Chris Mungall and
M{\'{e}}lanie Courtot and
Alan Ruttenberg and
Yongqun He},
title = {Ontobee: {A} linked ontology data server to support ontology term
dereferencing, linkage, query and integration},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D347--D352},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw918},
doi = {10.1093/NAR/GKW918},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OngXZLLZMCRH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JiaRAWGTLDPSDCL17,
author = {Baofeng Jia and
Amogelang R. Raphenya and
Brian P. Alcock and
Nicholas Waglechner and
Peiyao Guo and
Kara K. Tsang and
Briony A. Lago and
Biren M. Dave and
Sheldon K. Pereira and
Arjun N. Sharma and
Sachin Doshi and
M{\'{e}}lanie Courtot and
Raymond Lo and
Laura E. Williams and
Jonathan G. Frye and
Tariq Elsayegh and
Daim Sardar and
Erin L. Westman and
Andrew C. Pawlowski and
Timothy A. Johnson and
Fiona S. L. Brinkman and
Gerard D. Wright and
Andrew G. McArthur},
title = {{CARD} 2017: expansion and model-centric curation of the comprehensive
antibiotic resistance database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D566--D573},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1004},
doi = {10.1093/NAR/GKW1004},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JiaRAWGTLDPSDCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KilicSWBCCTOCME16,
author = {Sefa Kili{\c{c}} and
Dinara M. Sagitova and
Shoshannah Wolfish and
Benoit Bely and
M{\'{e}}lanie Courtot and
Stacy Ciufo and
Tatiana A. Tatusova and
Claire O'Donovan and
Marcus C. Chibucos and
Maria Jesus Martin and
Ivan Erill},
title = {From data repositories to submission portals: rethinking the role
of domain-specific databases in CollecTF},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw055},
doi = {10.1093/DATABASE/BAW055},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KilicSWBCCTOCME16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotMM16,
author = {M{\'{e}}lanie Courtot and
James Malone and
Chris Mungall},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Ten Simple Rules for Biomedical Ontology Development},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IT404\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/CourtotMSPFFP16,
author = {M{\'{e}}lanie Courtot and
Alex L. Mitchell and
Maxim Scheremetjew and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
Laura I. Furlong and
Robert D. Finn and
Helen E. Parkinson},
editor = {Adrian Paschke and
Albert Burger and
Andrea Splendiani and
M. Scott Marshall and
Paolo Romano},
title = {Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims},
booktitle = {Proceedings of the 9th International Conference Semantic Web Applications
and Tools for Life Sciences, Amsterdam, The Netherlands, December
5-8, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1795},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1795/paper23.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/CourtotMSPFFP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CourtotMDDGJTMM15,
author = {M{\'{e}}lanie Courtot and
Justin Meskas and
Alexander D. Diehl and
Radina Droumeva and
Raphael Gottardo and
Adrin Jalali and
Mohammad Jafar Taghiyar and
Holden T. Maecker and
J. Philip McCoy and
Alan Ruttenberg and
Richard H. Scheuermann and
Ryan Remy Brinkman},
title = {flowCL: ontology-based cell population labelling in flow cytometry},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1337--1339},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu807},
doi = {10.1093/BIOINFORMATICS/BTU807},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CourtotMDDGJTMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/Osumi-Sutherland15,
author = {David Osumi{-}Sutherland and
Enrico Ponta and
M{\'{e}}lanie Courtot and
Helen E. Parkinson and
Laura Badi},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {Cell, Chemical and Anatomical Views of the Gene Ontology: Mapping
to a Roche Controlled Vocabulary},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {84--93},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/paper\_44.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/Osumi-Sutherland15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/CourtotSSHSWMO15,
author = {M{\'{e}}lanie Courtot and
Aleksandra Shypitsyna and
Elena Speretta and
Alexander Holmes and
Tony Sawford and
Tony Wardell and
Maria Jesus Martin and
Claire O'Donovan},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {UniProt-GOA: {A} Central Resource for Data Integration and {GO} Annotation},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {227--228},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/poster\_75.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/CourtotSSHSWMO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotZSBR13,
author = {M{\'{e}}lanie Courtot and
Jie Zheng and
Christian J. Stoeckert Jr. and
Ryan Remy Brinkman and
Alan Ruttenberg},
editor = {Michel Dumontier and
Robert Hoehndorf and
Christopher J. O. Baker},
title = {Diagnostic criteria and clinical guidelines standardization to automate
case classification},
booktitle = {Proceedings of the 4th International Conference on Biomedical Ontology,
{ICBO} 2013, Montreal, Canada, July 7-12, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1060},
pages = {101--104},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1060/icbo2013\_submission\_57.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotZSBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/Courtot12,
author = {M{\'{e}}lanie Courtot},
editor = {Ronald Cornet and
Robert Stevens},
title = {Knowledge representation in Health Research: the modeling of Adverse
Events Following Immunization},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/ecs\_1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/Courtot12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotBR12,
author = {M{\'{e}}lanie Courtot and
Ryan Remy Brinkman and
Alan Ruttenberg},
editor = {Ronald Cornet and
Robert Stevens},
title = {Adverse events following immunization: reporting standardization,
automatic case classification and signal detection},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/poster\_1.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ao/Rocca-SerraROWSGCBSSP11,
author = {Philippe Rocca{-}Serra and
Alan Ruttenberg and
Martin J. O'Connor and
Patricia L. Whetzel and
Daniel Schober and
Jay Greenbaum and
M{\'{e}}lanie Courtot and
Ryan Remy Brinkman and
Susanna{-}Assunta Sansone and
Richard H. Scheuermann and
Bjoern Peters},
title = {Overcoming the ontology enrichment bottleneck with Quick Term Templates},
journal = {Appl. Ontology},
volume = {6},
number = {1},
pages = {13--22},
year = {2011},
url = {https://doi.org/10.3233/AO-2011-0086},
doi = {10.3233/AO-2011-0086},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ao/Rocca-SerraROWSGCBSSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ao/CourtotGLMSBR11,
author = {M{\'{e}}lanie Courtot and
Frank Gibson and
Allyson L. Lister and
James Malone and
Daniel Schober and
Ryan Remy Brinkman and
Alan Ruttenberg},
title = {{MIREOT:} The minimum information to reference an external ontology
term},
journal = {Appl. Ontology},
volume = {6},
number = {1},
pages = {23--33},
year = {2011},
url = {https://doi.org/10.3233/AO-2011-0087},
doi = {10.3233/AO-2011-0087},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ao/CourtotGLMSBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotB11,
author = {M{\'{e}}lanie Courtot and
Ryan Remy Brinkman},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Towards an Adverse Event Reporting Ontology},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper34.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotBR11,
author = {M{\'{e}}lanie Courtot and
Ryan Remy Brinkman and
Alan Ruttenberg},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Reporting Adverse Events: Basis for a Common Representation},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper60.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CourtotMBR11,
author = {M{\'{e}}lanie Courtot and
Chris Mungall and
Ryan Remy Brinkman and
Alan Ruttenberg},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Building the {OBO} Foundry - One Policy at a Time},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper72.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CourtotMBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/owled/2011,
editor = {Michel Dumontier and
M{\'{e}}lanie Courtot},
title = {Proceedings of the 8th International Workshop on {OWL:} Experiences
and Directions {(OWLED} 2011), San Francisco, California, USA, June
5-6, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {796},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-796},
urn = {urn:nbn:de:0074-796-0},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/owled/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiCNL10,
author = {Chen Li and
M{\'{e}}lanie Courtot and
Nicolas Le Nov{\`{e}}re and
Camille Laibe},
title = {BioModels.net Web Services, a free and integrated toolkit for computational
modelling software},
journal = {Briefings Bioinform.},
volume = {11},
number = {3},
pages = {270--277},
year = {2010},
url = {https://doi.org/10.1093/bib/bbp056},
doi = {10.1093/BIB/BBP056},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiCNL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10,
author = {Ryan Remy Brinkman and
M{\'{e}}lanie Courtot and
Dirk Derom and
Jennifer Fostel and
Yongqun He and
Phillip W. Lord and
James Malone and
Helen E. Parkinson and
Bj{\"{o}}rn Peters and
Philippe Rocca{-}Serra and
Alan Ruttenberg and
Susanna{-}Assunta Sansone and
Larisa N. Soldatova and
Christian J. Stoeckert Jr. and
Jessica A. Turner and
Jie Zheng and
et al.},
title = {Modeling biomedical experimental processes with {OBI}},
journal = {J. Biomed. Semant.},
volume = {1},
number = {{S-1}},
pages = {S7},
year = {2010},
url = {http://www.jbiomedsem.com/content/1/S1/S7},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/owled/CourtotBGLMSBR08,
author = {M{\'{e}}lanie Courtot and
William J. Bug and
Frank Gibson and
Allyson L. Lister and
James Malone and
Daniel Schober and
Ryan Remy Brinkman and
Alan Ruttenberg},
editor = {Catherine Dolbear and
Alan Ruttenberg and
Ulrike Sattler},
title = {The {OWL} of Biomedical Investigations},
booktitle = {Proceedings of the Fifth {OWLED} Workshop on {OWL:} Experiences and
Directions, collocated with the 7th International Semantic Web Conference
(ISWC-2008), Karlsruhe, Germany, October 26-27, 2008},
series = {{CEUR} Workshop Proceedings},
volume = {432},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-432/owled2008eu\_submission\_38.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/owled/CourtotBGLMSBR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NovereBBCDDLSSSSH06,
author = {Nicolas Le Nov{\`{e}}re and
Benjamin J. Bornstein and
Alexander Broicher and
M{\'{e}}lanie Courtot and
Marco Donizelli and
Harish Dharuri and
Lu Li and
Herbert M. Sauro and
Maria J. Schilstra and
Bruce E. Shapiro and
Jacky L. Snoep and
Michael Hucka},
title = {BioModels Database: a free, centralized database of curated, published,
quantitative kinetic models of biochemical and cellular systems},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {689--691},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj092},
doi = {10.1093/NAR/GKJ092},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NovereBBCDDLSSSSH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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