BibTeX records: Robin D. Dowell

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@article{DBLP:journals/bmcbi/MaasD24,
  author       = {Zachary L. Maas and
                  Robin D. Dowell},
  title        = {Internal and external normalization of nascent {RNA} sequencing run-on
                  experiments},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {19},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12859-023-05607-3},
  doi          = {10.1186/S12859-023-05607-3},
  timestamp    = {Fri, 19 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MaasD24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/StanleyGSASD20,
  author       = {Jacob T. Stanley and
                  Alison R. Gilchrist and
                  Alex C. Stabell and
                  Mary A. Allen and
                  Sara L. Sawyer and
                  Robin D. Dowell},
  title        = {Two-stage {ML} Classifier for Identifying Host Protein Targets of
                  the Dengue Protease},
  booktitle    = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
                  January 3-7, 2020},
  pages        = {487--498},
  year         = {2020},
  url          = {https://psb.stanford.edu/psb-online/proceedings/psb20/Stanley.pdf},
  timestamp    = {Fri, 13 Aug 2021 16:31:26 +0200},
  biburl       = {https://dblp.org/rec/conf/psb/StanleyGSASD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/AzofeifaD17,
  author       = {Joseph Azofeifa and
                  Robin D. Dowell},
  title        = {A generative model for the behavior of {RNA} polymerase},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {2},
  pages        = {227--234},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw599},
  doi          = {10.1093/BIOINFORMATICS/BTW599},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AzofeifaD17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/RudraSVRODRSK17,
  author       = {Pratyaydipta Rudra and
                  W. Jenny Shi and
                  Brian Vestal and
                  Pamela H. Russell and
                  Aaron Odell and
                  Robin D. Dowell and
                  Richard Radcliffe and
                  Laura M. Saba and
                  Katerina J. Kechris},
  title        = {Model based heritability scores for high-throughput sequencing data},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {143:1--143:16},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1539-6},
  doi          = {10.1186/S12859-017-1539-6},
  timestamp    = {Sun, 18 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RudraSVRODRSK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/AzofeifaALD17,
  author       = {Joseph Azofeifa and
                  Mary A. Allen and
                  Manuel E. Lladser and
                  Robin D. Dowell},
  title        = {An Annotation Agnostic Algorithm for Detecting Nascent {RNA} Transcripts
                  in GRO-Seq},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {14},
  number       = {5},
  pages        = {1070--1081},
  year         = {2017},
  url          = {https://doi.org/10.1109/TCBB.2016.2520919},
  doi          = {10.1109/TCBB.2016.2520919},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/AzofeifaALD17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/KnoxD16,
  author       = {David A. Knox and
                  Robin D. Dowell},
  title        = {A Modeling Framework for Generation of Positional and Temporal Simulations
                  of Transcriptional Regulation},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {459--471},
  year         = {2016},
  url          = {https://doi.org/10.1109/TCBB.2015.2459708},
  doi          = {10.1109/TCBB.2015.2459708},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/KnoxD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bcb/AzofeifaALD14,
  author       = {Joseph Azofeifa and
                  Mary A. Allen and
                  Manuel E. Lladser and
                  Robin D. Dowell},
  editor       = {Pierre Baldi and
                  Wei Wang},
  title        = {FStitch: a fast and simple algorithm for detecting nascent {RNA} transcripts},
  booktitle    = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
                  Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
                  USA, September 20-23, 2014},
  pages        = {174--183},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2649387.2649427},
  doi          = {10.1145/2649387.2649427},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/AzofeifaALD14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bcb/MalmerRORD14,
  author       = {Daniel Malmer and
                  Phillip A. Richmond and
                  Aaron Odell and
                  Richard Radcliffe and
                  Robin D. Dowell},
  editor       = {Pierre Baldi and
                  Wei Wang},
  title        = {Inferring ancestry in mouse genomes using a hidden Markov model},
  booktitle    = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
                  Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
                  USA, September 20-23, 2014},
  pages        = {637--638},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2649387.2660812},
  doi          = {10.1145/2649387.2660812},
  timestamp    = {Mon, 26 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/MalmerRORD14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/DanfordDAGFG11,
  author       = {Timothy Danford and
                  Robin D. Dowell and
                  Sudeep Agarwala and
                  Paula Grisafi and
                  Gerald Fink and
                  David K. Gifford},
  title        = {Discovering Regulatory Overlapping {RNA} Transcripts},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {3},
  pages        = {295--303},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2010.0267},
  doi          = {10.1089/CMB.2010.0267},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/DanfordDAGFG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/DanfordDAGFG10,
  author       = {Timothy Danford and
                  Robin D. Dowell and
                  Sudeep Agarwala and
                  Paula Grisafi and
                  Gerald Fink and
                  David K. Gifford},
  editor       = {Bonnie Berger},
  title        = {Discovering Regulatory Overlapping {RNA} Transcripts},
  booktitle    = {Research in Computational Molecular Biology, 14th Annual International
                  Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6044},
  pages        = {110--122},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-12683-3\_8},
  doi          = {10.1007/978-3-642-12683-3\_8},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DanfordDAGFG10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/GerberDJG07,
  author       = {Georg K. Gerber and
                  Robin D. Dowell and
                  Tommi S. Jaakkola and
                  David K. Gifford},
  title        = {Automated Discovery of Functional Generality of Human Gene Expression
                  Programs},
  journal      = {PLoS Comput. Biol.},
  volume       = {3},
  number       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1371/journal.pcbi.0030148},
  doi          = {10.1371/JOURNAL.PCBI.0030148},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/GerberDJG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/DowellE06,
  author       = {Robin D. Dowell and
                  Sean R. Eddy},
  title        = {Efficient pairwise {RNA} structure prediction and alignment using
                  sequence alignment constraints},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {400},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-400},
  doi          = {10.1186/1471-2105-7-400},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DowellE06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/DowellE04,
  author       = {Robin D. Dowell and
                  Sean R. Eddy},
  title        = {Evaluation of several lightweight stochastic context-free grammars
                  for {RNA} secondary structure prediction},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {71},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-71},
  doi          = {10.1186/1471-2105-5-71},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DowellE04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/DowellJDES01,
  author       = {Robin D. Dowell and
                  Rodney M. Jokerst and
                  Allen Day and
                  Sean R. Eddy and
                  Lincoln Stein},
  title        = {The Distributed Annotation System},
  journal      = {{BMC} Bioinform.},
  volume       = {2},
  pages        = {7},
  year         = {2001},
  url          = {https://doi.org/10.1186/1471-2105-2-7},
  doi          = {10.1186/1471-2105-2-7},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DowellJDES01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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