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ORCIDBibTeX records: Socorro Gama-Castro
@article{DBLP:journals/biodb/Mendez-CruzBGAG20,
author = {Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Antonio Blanchet and
Alan God{\'{\i}}nez and
Ignacio Arroyo{-}Fern{\'{a}}ndez and
Socorro Gama{-}Castro and
Sara Berenice Mart{\'{\i}}nez{-}Luna and
Cristian Gonz{\'{a}}lez{-}Col{\'{\i}}n and
Julio Collado{-}Vides},
title = {Knowledge extraction for assisted curation of summaries of bacterial
transcription factor properties},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa109},
doi = {10.1093/DATABASE/BAAA109},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Mendez-CruzBGAG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TierrafriaMCSAI19,
author = {V{\'{\i}}ctor H. Tierrafr{\'{\i}}a and
Citlalli Mej{\'{\i}}a{-}Almonte and
J. M. Camacho{-}Zaragoza and
Heladia Salgado and
K. Alquicira and
Chu Ishida and
Socorro Gama{-}Castro and
Julio Collado{-}Vides},
title = {{MCO:} towards an ontology and unified vocabulary for a framework-based
annotation of microbial growth conditions},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {856--864},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty689},
doi = {10.1093/BIOINFORMATICS/BTY689},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TierrafriaMCSAI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Lithgow-Serrano19,
author = {Oscar Lithgow{-}Serrano and
Socorro Gama{-}Castro and
Cecilia Ishida{-}Guti{\'{e}}rrez and
Citlalli Mej{\'{\i}}a{-}Almonte and
V{\'{\i}}ctor H. Tierrafr{\'{\i}}a and
Sara Mart{\'{\i}}nez{-}Luna and
Alberto Santos{-}Zavaleta and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Julio Collado{-}Vides},
title = {Similarity corpus on microbial transcriptional regulation},
journal = {J. Biomed. Semant.},
volume = {10},
number = {1},
pages = {8:1--8:14},
year = {2019},
url = {https://doi.org/10.1186/s13326-019-0200-x},
doi = {10.1186/S13326-019-0200-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Lithgow-Serrano19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Santos-Zavaleta19,
author = {Alberto Santos{-}Zavaleta and
Heladia Salgado and
Socorro Gama{-}Castro and
Mishael S{\'{a}}nchez{-}P{\'{e}}rez and
Laura G{\'{o}}mez{-}Romero and
Daniela Ledezma{-}Tejeida and
Jair Santiago Garc{\'{\i}}a{-}Sotelo and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Luis Mu{\~{n}}iz{-}Rascado and
Pablo Pe{\~{n}}a{-}Loredo and
Cecilia Ishida{-}Guti{\'{e}}rrez and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Victor del Moral{-}Ch{\'{a}}vez and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
James E. Galagan and
Julio Collado{-}Vides},
title = {RegulonDB v 10.5: tackling challenges to unify classic and high throughput
knowledge of gene regulation in E. coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D212--D220},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1077},
doi = {10.1093/NAR/GKY1077},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Santos-Zavaleta19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RinaldiLGSL17,
author = {Fabio Rinaldi and
Oscar Lithgow{-}Serrano and
Socorro Gama{-}Castro and
Hilda Solano{-}Lira and
Alejandra L{\'{o}}pez{-}Fuentes and
Luis Mu{\~{n}}iz{-}Rascado and
Cecilia Ishida{-}Guti{\'{e}}rrez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Julio Collado{-}Vides},
title = {Strategies towards digital and semi-automated curation in RegulonDB},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax012},
year = {2017},
url = {https://doi.org/10.1093/database/bax012},
doi = {10.1093/DATABASE/BAX012},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RinaldiLGSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RinaldiLGSLMIMC17,
author = {Fabio Rinaldi and
Oscar Lithgow{-}Serrano and
Socorro Gama{-}Castro and
Hilda Solano{-}Lira and
Alejandra L{\'{o}}pez{-}Fuentes and
Luis Mu{\~{n}}iz{-}Rascado and
Cecilia Ishida{-}Guti{\'{e}}rrez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Julio Collado{-}Vides},
title = {Erratum: Strategies towards digital and semi-automated curation in
RegulonDB},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax012},
year = {2017},
url = {https://doi.org/10.1093/database/bax029},
doi = {10.1093/DATABASE/BAX029},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RinaldiLGSLMIMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Mendez-CruzGMCM17,
author = {Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Socorro Gama{-}Castro and
Citlalli Mej{\'{\i}}a{-}Almonte and
Marco{-}Polo Castillo{-}Villalba and
Luis Mu{\~{n}}iz{-}Rascado and
Julio Collado{-}Vides},
title = {First steps in automatic summarization of transcription factor properties
for RegulonDB: classification of sentences about structural domains
and regulated processes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax070},
year = {2017},
url = {https://doi.org/10.1093/database/bax070},
doi = {10.1093/DATABASE/BAX070},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Mendez-CruzGMCM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMSBBCFGK17,
author = {Ingrid M. Keseler and
Amanda Mackie and
Alberto Santos{-}Zavaleta and
Richard Billington and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ron Caspi and
Carol A. Fulcher and
Socorro Gama{-}Castro and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Mart{\'{\i}}n Peralta{-}Gil and
Pallavi Subhraveti and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Daniel S. Weaver and
Julio Collado{-}Vides and
Ian T. Paulsen and
Peter D. Karp},
title = {The EcoCyc database: reflecting new knowledge about Escherichia coli
{K-12}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D543--D550},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1003},
doi = {10.1093/NAR/GKW1003},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMSBBCFGK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangAAABBCCCCCD16,
author = {Qinghua Wang and
Shabbir S. Abdul and
Lara Almeida and
Sophia Ananiadou and
Yalbi I. Balderas{-}Mart{\'{\i}}nez and
Riza Batista{-}Navarro and
David Campos and
Lucy Chilton and
Hui{-}Jou Chou and
Gabriela Contreras and
Laurel Cooper and
Hong{-}Jie Dai and
Barbra Ferrell and
Juliane Fluck and
Socorro Gama{-}Castro and
Nancy George and
Georgios V. Gkoutos and
Afroza Khanam Irin and
Lars Juhl Jensen and
Silvia Jimenez and
Toni Rose Jue and
Ingrid M. Keseler and
Sumit Madan and
S{\'{e}}rgio Matos and
Peter McQuilton and
Marija Milacic and
Matthew E. Mort and
Jeyakumar Natarajan and
Evangelos Pafilis and
Emiliano Pereira and
Shruti Rao and
Fabio Rinaldi and
Karen Rothfels and
David Salgado and
Raquel M. Silva and
Onkar Singh and
Raymund Stefancsik and
Chu{-}Hsien Su and
Suresh Subramani and
Hamsa D. Tadepally and
Loukia Tsaprouni and
Nicole A. Vasilevsky and
Xiaodong Wang and
Andrew Chatr{-}aryamontri and
Stanley J. F. Laulederkind and
Sherri Matis{-}Mitchell and
Johanna R. McEntyre and
Sandra E. Orchard and
Sangya Pundir and
Raul Rodriguez{-}Esteban and
Kimberly Van Auken and
Zhiyong Lu and
Mary L. Schaeffer and
Cathy H. Wu and
Lynette Hirschman and
Cecilia N. Arighi},
title = {Overview of the interactive task in BioCreative {V}},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw119},
doi = {10.1093/DATABASE/BAW119},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WangAAABBCCCCCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroSSLM16,
author = {Socorro Gama{-}Castro and
Heladia Salgado and
Alberto Santos{-}Zavaleta and
Daniela Ledezma{-}Tejeida and
Luis Mu{\~{n}}iz{-}Rascado and
Jair Santiago Garc{\'{\i}}a{-}Sotelo and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Irma Mart{\'{\i}}nez{-}Flores and
Lucia Pannier and
Jaime Abraham Castro{-}Mondrag{\'{o}}n and
Alejandra Medina{-}Rivera and
Hilda Solano{-}Lira and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ernesto P{\'{e}}rez{-}Rueda and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Liliana Porr{\'{o}}n{-}Sotelo and
Alejandra L{\'{o}}pez{-}Fuentes and
Anastasia Hern{\'{a}}ndez{-}Koutoucheva and
Victor del Moral{-}Ch{\'{a}}vez and
Fabio Rinaldi and
Julio Collado{-}Vides},
title = {RegulonDB version 9.0: high-level integration of gene regulation,
coexpression, motif clustering and beyond},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {133--143},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1156},
doi = {10.1093/NAR/GKV1156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroSSLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorettoSDBBLGGR16,
author = {Marco Moretto and
Paolo Sonego and
Nicolas Dierckxsens and
Matteo Brilli and
Luca Bianco and
Daniela Ledezma{-}Tejeida and
Socorro Gama{-}Castro and
Marco Galardini and
Chiara Romualdi and
Kris Laukens and
Julio Collado{-}Vides and
Pieter Meysman and
Kristof Engelen},
title = {{COLOMBOS} v3.0: leveraging gene expression compendia for cross-species
analyses},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {620--623},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1251},
doi = {10.1093/NAR/GKV1251},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MorettoSDBBLGGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/polibits/RinaldiLLGBSC15,
author = {Fabio Rinaldi and
Oscar Lithgow{-}Serrano and
Alejandra L{\'{o}}pez{-}Fuentes and
Socorro Gama{-}Castro and
Yalbi I. Balderas{-}Mart{\'{\i}}nez and
Hilda Solano{-}Lira and
Julio Collado{-}Vides},
title = {An Approach towards Semi-automated Biomedical Literature Curation
and Enrichment for a Major Biological Database},
journal = {Polibits},
volume = {52},
pages = {25--31},
year = {2015},
url = {https://doi.org/10.17562/PB-52-3},
doi = {10.17562/PB-52-3},
timestamp = {Mon, 16 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/polibits/RinaldiLLGBSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Gama-CastroRLBCESMC14,
author = {Socorro Gama{-}Castro and
Fabio Rinaldi and
Alejandra L{\'{o}}pez{-}Fuentes and
Yalbi Itzel Balderas{-}Mart{\'{\i}}nez and
Simon Clematide and
Tilia Renate Ellendorff and
Alberto Santos{-}Zavaleta and
Hernani Marques{-}Madeira and
Julio Collado{-}Vides},
title = {Assisted curation of regulatory interactions and growth conditions
of OxyR in \emph{E. coli} {K-12}},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau049},
doi = {10.1093/DATABASE/BAU049},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Gama-CastroRLBCESMC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeysmanSBFLGLMLMCE14,
author = {Pieter Meysman and
Paolo Sonego and
Luca Bianco and
Qiang Fu and
Daniela Ledezma{-}Tejeida and
Socorro Gama{-}Castro and
Veerle Liebens and
Jan Michiels and
Kris Laukens and
Kathleen Marchal and
Julio Collado{-}Vides and
Kristof Engelen},
title = {{COLOMBOS} v2.0: an ever expanding collection of bacterial expression
compendia},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {649--653},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1086},
doi = {10.1093/NAR/GKT1086},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MeysmanSBFLGLMLMCE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13,
author = {Heladia Salgado and
Mart{\'{\i}}n Peralta{-}Gil and
Socorro Gama{-}Castro and
Alberto Santos{-}Zavaleta and
Luis Mu{\~{n}}iz{-}Rascado and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Verena Weiss and
Hilda Solano{-}Lira and
Irma Mart{\'{\i}}nez{-}Flores and
Alejandra Medina{-}Rivera and
Gerardo Salgado{-}Osorio and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Alejandra L{\'{o}}pez{-}Fuentes and
Liliana Porr{\'{o}}n{-}Sotelo and
Araceli M. Huerta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Yalbi Itzel Balderas{-}Mart{\'{\i}}nez and
Lucia Pannier and
Maricela Olvera and
Aurora Labastida and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Leticia Vega{-}Alvarado and
Victor del Moral{-}Ch{\'{a}}vez and
Alfredo Hern{\'{a}}ndez{-}Alvarez and
Enrique Morett and
Julio Collado{-}Vides},
title = {RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory
phrases, cross-validated gold standards and more},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {203--213},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1201},
doi = {10.1093/NAR/GKS1201},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13,
author = {Ingrid M. Keseler and
Amanda Mackie and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carol A. Fulcher and
Araceli M. Huerta and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Imke Schr{\"{o}}der and
Alexander Glennon Shearer and
Pallavi Subhraveti and
Michael Travers and
Deepika Weerasinghe and
Verena Weiss and
Julio Collado{-}Vides and
Robert P. Gunsalus and
Ian T. Paulsen and
Peter D. Karp},
title = {EcoCyc: fusing model organism databases with systems biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {605--612},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1027},
doi = {10.1093/NAR/GKS1027},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroSPSMSJWGLPAMMAMBMHMCTVOOGMC11,
author = {Socorro Gama{-}Castro and
Heladia Salgado and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Luis Mu{\~{n}}iz{-}Rascado and
Hilda Solano{-}Lira and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Verena Weiss and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Alejandra L{\'{o}}pez{-}Fuentes and
Liliana Porr{\'{o}}n{-}Sotelo and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Alejandra Medina{-}Rivera and
Irma Mart{\'{\i}}nez{-}Flores and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Ruth Mart{\'{\i}}nez{-}Adame and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Juan Miranda{-}R{\'{\i}}os and
Araceli M. Huerta and
Alfredo Mendoza{-}Vargas and
Leonardo Collado{-}Torres and
Blanca Taboada and
Leticia Vega{-}Alvarado and
Maricela Olvera and
Leticia Olvera and
Ricardo Grande and
Enrique Morett and
Julio Collado{-}Vides},
title = {RegulonDB version 7.0: transcriptional regulation of \emph{Escherichia
coli} {K-12} integrated within genetic sensory response units (Gensor
Units)},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {98--105},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1110},
doi = {10.1093/NAR/GKQ1110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroSPSMSJWGLPAMMAMBMHMCTVOOGMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerCSPGMBPKAKSPLFSSMPGK11,
author = {Ingrid M. Keseler and
Julio Collado{-}Vides and
Alberto Santos{-}Zavaleta and
Mart{\'{\i}}n Peralta{-}Gil and
Socorro Gama{-}Castro and
Luis Mu{\~{n}}iz{-}Rascado and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Suzanne M. Paley and
Markus Krummenacker and
Tomer Altman and
Pallavi Kaipa and
Aaron Spaulding and
John Pacheco and
Mario Latendresse and
Carol A. Fulcher and
Malabika Sarker and
Alexander Glennon Shearer and
Amanda Mackie and
Ian T. Paulsen and
Robert P. Gunsalus and
Peter D. Karp},
title = {EcoCyc: a comprehensive database of \emph{Escherichia coli} biology},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {583--590},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1143},
doi = {10.1093/NAR/GKQ1143},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerCSPGMBPKAKSPLFSSMPGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerBCGGJKNPPPSSK09,
author = {Ingrid M. Keseler and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides and
Socorro Gama{-}Castro and
Robert P. Gunsalus and
D. Aaron Johnson and
Markus Krummenacker and
Laura M. Nolan and
Suzanne M. Paley and
Ian T. Paulsen and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto D. Santos{-}Zavaleta and
Alexander Glennon Shearer and
Peter D. Karp},
title = {EcoCyc: {A} comprehensive view of \emph{Escherichia coli} biology},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {464--470},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn751},
doi = {10.1093/NAR/GKN751},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerBCGGJKNPPPSSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroJPSPCSMMSBAPMMMHTC08,
author = {Socorro Gama{-}Castro and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
M{\'{o}}nica I. Pe{\~{n}}aloza{-}Sp{\'{\i}}nola and
Bruno Contreras{-}Moreira and
Juan Segura{-}Salazar and
Luis Mu{\~{n}}iz{-}Rascado and
Irma Mart{\'{\i}}nez{-}Flores and
Heladia Salgado and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Cei Abreu{-}Goodger and
Carlos Rodr{\'{\i}}guez Penagos and
Juan Miranda{-}R{\'{\i}}os and
Enrique Morett and
Enrique Merino and
Araceli M. Huerta and
Luis Trevi{\~{n}}o{-}Quintanilla and
Julio Collado{-}Vides},
title = {RegulonDB (version 6.0): gene regulation model of \emph{Escherichia
coli} {K-12} beyond transcription, active (experimental) annotated
promoters and Textpresso navigation},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {120--124},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm994},
doi = {10.1093/NAR/GKM994},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroJPSPCSMMSBAPMMMHTC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalgadoSGPPMKC06,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Mart{\'{\i}}n Peralta{-}Gil and
M{\'{o}}nica I. Pe{\~{n}}aloza{-}Sp{\'{\i}}nola and
Agustino Mart{\'{\i}}nez{-}Antonio and
Peter D. Karp and
Julio Collado{-}Vides},
title = {The comprehensive updated regulatory network of \emph{Escherichia
coli }K-12},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {5},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-5},
doi = {10.1186/1471-2105-7-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalgadoSGPPMKC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoGPDSSMJBSMC06,
author = {Heladia Salgado and
Socorro Gama{-}Castro and
Mart{\'{\i}}n Peralta{-}Gil and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Alberto Santos{-}Zavaleta and
Irma Mart{\'{\i}}nez{-}Flores and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Juan Segura{-}Salazar and
Agustino Mart{\'{\i}}nez{-}Antonio and
Julio Collado{-}Vides},
title = {RegulonDB (version 5.0): \emph{Escherichia coli} {K-12} transcriptional
regulatory network, operon organization, and growth conditions},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {394--397},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj156},
doi = {10.1093/NAR/GKJ156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoGPDSSMJBSMC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerCGIPPPK05,
author = {Ingrid M. Keseler and
Julio Collado{-}Vides and
Socorro Gama{-}Castro and
John Ingraham and
Suzanne M. Paley and
Ian T. Paulsen and
Mart{\'{\i}}n Peralta{-}Gil and
Peter D. Karp},
title = {EcoCyc: a comprehensive database resource for \emph{Escherichia coli}},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {334--337},
year = {2005},
url = {https://doi.org/10.1093/nar/gki108},
doi = {10.1093/NAR/GKI108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerCGIPPPK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoGMDSPGJSBC04,
author = {Heladia Salgado and
Socorro Gama{-}Castro and
Agustino Mart{\'{\i}}nez{-}Antonio and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Mart{\'{\i}}n Peralta{-}Gil and
Delfino Garcia{-}Alonso and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Alberto Santos{-}Zavaleta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides},
title = {RegulonDB (version 4.0): transcriptional regulation, operon organization
and growth conditions in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {303--306},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh140},
doi = {10.1093/NAR/GKH140},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoGMDSPGJSBC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarpRSPCPPBG03,
author = {Peter D. Karp and
Monica Riley and
Milton H. Saier Jr. and
Ian T. Paulsen and
Julio Collado{-}Vides and
Suzanne M. Paley and
Alida Pellegrini{-}Toole and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Socorro Gama{-}Castro},
title = {The EcoCyc Database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {56--58},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.56},
doi = {10.1093/NAR/30.1.56},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarpRSPCPPBG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Collado-VidesMPSHGRCBMGSBDSM02,
author = {Julio Collado{-}Vides and
Gabriel Moreno{-}Hagelsieb and
Ernesto P{\'{e}}rez{-}Rueda and
Heladia Salgado and
Araceli M. Huerta and
Rosa Mar{\'{\i}}a Guti{\'{e}}rrez and
David A. Rosenblueth and
Andr{\'{e}}s Christen and
Esperanza Ben{\'{\i}}tez{-}Bell{\'{o}}n and
Arturo Medrano{-}Soto and
Socorro Gama{-}Castro and
Alberto Santos{-}Zavaleta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Dulce Mar{\'{\i}}a Mill{\'{a}}},
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt},
title = {Genomics of Gene Regulation: The View from Escherichia coli},
booktitle = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
pages = {103--128},
publisher = {{MIT} Press},
year = {2002},
timestamp = {Tue, 28 Aug 2007 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Collado-VidesMPSHGRCBMGSBDSM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoSGMDSPBC01,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Dulce Mill{\'{a}}n{-}Z{\'{a}}rate and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Ernesto P{\'{e}}rez{-}Rueda and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides},
title = {RegulonDB (version 3.2): transcriptional regulation and operon organization
in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {72--74},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.72},
doi = {10.1093/NAR/29.1.72},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoSGMDSPBC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoSGMBC00,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Dulce Mill{\'{a}}n{-}Z{\'{a}}rate and
Frederick R. Blattner and
Julio Collado{-}Vides},
title = {RegulonDB (version 3.0): transcriptional regulation and operon organization
in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {65--67},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.65},
doi = {10.1093/NAR/28.1.65},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoSGMBC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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