BibTeX records: Kai Hakala

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@article{DBLP:journals/corr/abs-1906-10907,
  author    = {Kai Hakala and
               Aleksi Vesanto and
               Niko Miekka and
               Tapio Salakoski and
               Filip Ginter},
  title     = {Leveraging Text Repetitions and Denoising Autoencoders in {OCR} Post-correction},
  journal   = {CoRR},
  volume    = {abs/1906.10907},
  year      = {2019},
  url       = {http://arxiv.org/abs/1906.10907},
  archivePrefix = {arXiv},
  eprint    = {1906.10907},
  timestamp = {Thu, 27 Jun 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1906-10907},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KaewphanHMSG18,
  author    = {Suwisa Kaewphan and
               Kai Hakala and
               Niko Miekka and
               Tapio Salakoski and
               Filip Ginter},
  title     = {Wide-scope biomedical named entity recognition and normalization with
               CRFs, fuzzy matching and character level modeling},
  journal   = {Database},
  volume    = {2018},
  pages     = {bay096},
  year      = {2018},
  url       = {https://doi.org/10.1093/database/bay096},
  doi       = {10.1093/database/bay096},
  timestamp = {Tue, 21 May 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/biodb/KaewphanHMSG18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SarkerBFHKMHTRK18,
  author    = {Abeed Sarker and
               Maksim Belousov and
               Jasper Friedrichs and
               Kai Hakala and
               Svetlana Kiritchenko and
               Farrokh Mehryary and
               Sifei Han and
               Tung Tran and
               Anthony Rios and
               Ramakanth Kavuluru and
               Berry de Bruijn and
               Filip Ginter and
               Debanjan Mahata and
               Saif M. Mohammad and
               Goran Nenadic and
               Graciela Gonzalez{-}Hernandez},
  title     = {Data and systems for medication-related text classification and concept
               normalization from Twitter: insights from the Social Media Mining
               for Health {(SMM4H)-2017} shared task},
  journal   = {{JAMIA}},
  volume    = {25},
  number    = {10},
  pages     = {1274--1283},
  year      = {2018},
  url       = {https://doi.org/10.1093/jamia/ocy114},
  doi       = {10.1093/jamia/ocy114},
  timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/jamia/SarkerBFHKMHTRK18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-louhi/MoenHPSLSGS18,
  author    = {Hans Moen and
               Kai Hakala and
               Laura{-}Maria Peltonen and
               Henry Suhonen and
               Petri Loukasm{\"{a}}ki and
               Tapio Salakoski and
               Filip Ginter and
               Sanna Salanter{\"{a}}},
  title     = {Evaluation of a Prototype System that Automatically Assigns Subject
               Headings to Nursing Narratives Using Recurrent Neural Network},
  booktitle = {Proceedings of the Ninth International Workshop on Health Text Mining
               and Information Analysis, Louhi@EMNLP 2018, Brussels, Belgium, October
               31, 2018},
  pages     = {94--100},
  year      = {2018},
  crossref  = {DBLP:conf/acl-louhi/2018},
  url       = {https://www.aclweb.org/anthology/W18-5611/},
  timestamp = {Wed, 11 Sep 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl-louhi/MoenHPSLSGS18},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HakalaMMKSG17,
  author    = {Kai Hakala and
               Farrokh Mehryary and
               Hans Moen and
               Suwisa Kaewphan and
               Tapio Salakoski and
               Filip Ginter},
  title     = {Ensemble of Convolutional Neural Networks for Medicine Intake Recognition
               in Twitter},
  booktitle = {Proceedings of the 2nd Social Media Mining for Health Research and
               Applications Workshop co-located with the American Medical Informatics
               Association Annual Symposium {(AMIA} 2017), Washington D.C., United
               States, November 4, 2017.},
  pages     = {59--63},
  year      = {2017},
  crossref  = {DBLP:conf/amia/2017smm4h},
  url       = {http://ceur-ws.org/Vol-1996/paper11.pdf},
  timestamp = {Tue, 28 May 2019 16:23:29 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/HakalaMMKSG17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MehryaryHKBSG17,
  author    = {Farrokh Mehryary and
               Kai Hakala and
               Suwisa Kaewphan and
               Jari Bj{\"{o}}rne and
               Tapio Salakoski and
               Filip Ginter},
  title     = {End-to-End System for Bacteria Habitat Extraction},
  booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
  pages     = {80--90},
  year      = {2017},
  crossref  = {DBLP:conf/bionlp/2017},
  url       = {https://doi.org/10.18653/v1/W17-2310},
  doi       = {10.18653/v1/W17-2310},
  timestamp = {Wed, 18 Sep 2019 12:15:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/MehryaryHKBSG17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MoenHMPSGS17,
  author    = {Hans Moen and
               Kai Hakala and
               Farrokh Mehryary and
               Laura{-}Maria Peltonen and
               Tapio Salakoski and
               Filip Ginter and
               Sanna Salanter{\"{a}}},
  title     = {Detecting mentions of pain and acute confusion in Finnish clinical
               text},
  booktitle = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
  pages     = {365--372},
  year      = {2017},
  crossref  = {DBLP:conf/bionlp/2017},
  url       = {https://doi.org/10.18653/v1/W17-2347},
  doi       = {10.18653/v1/W17-2347},
  timestamp = {Wed, 18 Sep 2019 12:15:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/MoenHMPSGS17},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MehryaryKHG16,
  author    = {Farrokh Mehryary and
               Suwisa Kaewphan and
               Kai Hakala and
               Filip Ginter},
  title     = {Filtering large-scale event collections using a combination of supervised
               and unsupervised learning for event trigger classification},
  journal   = {J. Biomedical Semantics},
  volume    = {7},
  pages     = {27},
  year      = {2016},
  url       = {https://doi.org/10.1186/s13326-016-0070-4},
  doi       = {10.1186/s13326-016-0070-4},
  timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/biomedsem/MehryaryKHG16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HakalaKSG16,
  author    = {Kai Hakala and
               Suwisa Kaewphan and
               Tapio Salakoski and
               Filip Ginter},
  title     = {Syntactic analyses and named entity recognition for PubMed and PubMed
               Central - up-to-the-minute},
  booktitle = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
               BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
  pages     = {102--107},
  year      = {2016},
  crossref  = {DBLP:conf/bionlp/2016},
  url       = {https://doi.org/10.18653/v1/W16-2913},
  doi       = {10.18653/v1/W16-2913},
  timestamp = {Wed, 18 Sep 2019 12:15:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/HakalaKSG16},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/PyysaloCCGHLSJ15,
  author    = {Sampo Pyysalo and
               Jorge Campos and
               Juan Miguel Cejuela and
               Filip Ginter and
               Kai Hakala and
               Chen Li and
               Pontus Stenetorp and
               Lars Juhl Jensen},
  title     = {Sharing annotations better: RESTful Open Annotation},
  booktitle = {Proceedings of the 53rd Annual Meeting of the Association for Computational
               Linguistics and the 7th International Joint Conference on Natural
               Language Processing of the Asian Federation of Natural Language Processing,
               {ACL} 2015, July 26-31, 2015, Beijing, China, System Demonstrations},
  pages     = {91--96},
  year      = {2015},
  crossref  = {DBLP:conf/acl/2015-d},
  url       = {https://www.aclweb.org/anthology/P15-4016/},
  timestamp = {Mon, 19 Aug 2019 18:08:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl/PyysaloCCGHLSJ15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/Hakala15,
  author    = {Kai Hakala},
  title     = {{UTU:} Adapting Biomedical Event Extraction System to Disorder Attribute
               Detection},
  booktitle = {Proceedings of the 9th International Workshop on Semantic Evaluation,
               SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
  pages     = {375--379},
  year      = {2015},
  crossref  = {DBLP:conf/semeval/2015},
  url       = {https://www.aclweb.org/anthology/S15-2064/},
  timestamp = {Mon, 16 Sep 2019 17:08:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/Hakala15},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/KaewphanHG14,
  author    = {Suwisa Kaewphan and
               Kai Hakala and
               Filip Ginter},
  title     = {{UTU:} Disease Mention Recognition and Normalization with CRFs and
               Vector Space Representations},
  booktitle = {Proceedings of the 8th International Workshop on Semantic Evaluation,
               SemEval@COLING 2014, Dublin, Ireland, August 23-24, 2014.},
  pages     = {807--811},
  year      = {2014},
  crossref  = {DBLP:conf/semeval/2014},
  url       = {https://www.aclweb.org/anthology/S14-2143/},
  timestamp = {Mon, 16 Sep 2019 17:08:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/KaewphanHG14},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HakalaLSPG13,
  author    = {Kai Hakala and
               Sofie Van Landeghem and
               Tapio Salakoski and
               Yves Van de Peer and
               Filip Ginter},
  title     = {{EVEX} in ST'13: Application of a large-scale text mining resource
               to event extraction and network construction},
  booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
               August 9, 2013},
  pages     = {26--34},
  year      = {2013},
  crossref  = {DBLP:conf/bionlp/2013-s},
  url       = {https://www.aclweb.org/anthology/W13-2004/},
  timestamp = {Mon, 16 Sep 2019 17:00:01 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/HakalaLSPG13},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/abi/LandeghemHRSPG12,
  author    = {Sofie Van Landeghem and
               Kai Hakala and
               Samuel R{\"{o}}nnqvist and
               Tapio Salakoski and
               Yves Van de Peer and
               Filip Ginter},
  title     = {Exploring Biomolecular Literature with {EVEX:} Connecting Genes through
               Events, Homology, and Indirect Associations},
  journal   = {Adv. Bioinformatics},
  volume    = {2012},
  pages     = {582765:1--582765:12},
  year      = {2012},
  url       = {https://doi.org/10.1155/2012/582765},
  doi       = {10.1155/2012/582765},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/bib/journals/abi/LandeghemHRSPG12},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl-louhi/2018,
  editor    = {Alberto Lavelli and
               Anne{-}Lyse Minard and
               Fabio Rinaldi},
  title     = {Proceedings of the Ninth International Workshop on Health Text Mining
               and Information Analysis, Louhi@EMNLP 2018, Brussels, Belgium, October
               31, 2018},
  publisher = {Association for Computational Linguistics},
  year      = {2018},
  url       = {https://www.aclweb.org/anthology/volumes/W18-56/},
  isbn      = {978-1-948087-74-2},
  timestamp = {Mon, 19 Aug 2019 18:13:39 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl-louhi/2018},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/amia/2017smm4h,
  editor    = {Abeed Sarker and
               Graciela Gonzalez},
  title     = {Proceedings of the 2nd Social Media Mining for Health Research and
               Applications Workshop co-located with the American Medical Informatics
               Association Annual Symposium {(AMIA} 2017), Washington D.C., United
               States, November 4, 2017},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1996},
  publisher = {CEUR-WS.org},
  year      = {2017},
  url       = {http://ceur-ws.org/Vol-1996},
  urn       = {urn:nbn:de:0074-1996-3},
  timestamp = {Tue, 28 May 2019 16:23:29 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/amia/2017smm4h},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2017,
  editor    = {Kevin Bretonnel Cohen and
               Dina Demner{-}Fushman and
               Sophia Ananiadou and
               Junichi Tsujii},
  title     = {BioNLP 2017, Vancouver, Canada, August 4, 2017},
  publisher = {Association for Computational Linguistics},
  year      = {2017},
  url       = {https://www.aclweb.org/anthology/volumes/W17-23/},
  doi       = {10.18653/v1/W17-23},
  isbn      = {978-1-945626-59-3},
  timestamp = {Wed, 18 Sep 2019 12:15:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/2017},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2016,
  editor    = {Kevin Bretonnel Cohen and
               Dina Demner{-}Fushman and
               Sophia Ananiadou and
               Jun'ichi Tsujii},
  title     = {Proceedings of the 15th Workshop on Biomedical Natural Language Processing,
               BioNLP@ACL 2016, Berlin, Germany, August 12, 2016},
  publisher = {Association for Computational Linguistics},
  year      = {2016},
  url       = {https://www.aclweb.org/anthology/volumes/W16-29/},
  doi       = {10.18653/v1/W16-29},
  isbn      = {978-1-945626-12-8},
  timestamp = {Wed, 18 Sep 2019 12:15:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/2016},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl/2015-d,
  title     = {Proceedings of the 53rd Annual Meeting of the Association for Computational
               Linguistics and the 7th International Joint Conference on Natural
               Language Processing of the Asian Federation of Natural Language Processing,
               {ACL} 2015, July 26-31, 2015, Beijing, China, System Demonstrations},
  publisher = {The Association for Computer Linguistics},
  year      = {2015},
  url       = {https://www.aclweb.org/anthology/volumes/P15-4/},
  isbn      = {978-1-941643-99-0},
  timestamp = {Mon, 19 Aug 2019 18:08:03 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/acl/2015-d},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/semeval/2015,
  editor    = {Daniel M. Cer and
               David Jurgens and
               Preslav Nakov and
               Torsten Zesch},
  title     = {Proceedings of the 9th International Workshop on Semantic Evaluation,
               SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
  publisher = {The Association for Computer Linguistics},
  year      = {2015},
  url       = {https://www.aclweb.org/anthology/volumes/S15-2/},
  isbn      = {978-1-941643-40-2},
  timestamp = {Mon, 16 Sep 2019 17:08:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/2015},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/semeval/2014,
  editor    = {Preslav Nakov and
               Torsten Zesch},
  title     = {Proceedings of the 8th International Workshop on Semantic Evaluation,
               SemEval@COLING 2014, Dublin, Ireland, August 23-24, 2014},
  publisher = {The Association for Computer Linguistics},
  year      = {2014},
  url       = {https://www.aclweb.org/anthology/volumes/S14-2/},
  isbn      = {978-1-941643-24-2},
  timestamp = {Mon, 16 Sep 2019 17:08:53 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/semeval/2014},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2013-s,
  editor    = {Claire N{\'{e}}dellec and
               Robert Bossy and
               Jin{-}Dong Kim and
               Jung{-}jae Kim and
               Tomoko Ohta and
               Sampo Pyysalo and
               Pierre Zweigenbaum},
  title     = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
               August 9, 2013},
  publisher = {Association for Computational Linguistics},
  year      = {2013},
  url       = {https://www.aclweb.org/anthology/W13-2000/},
  isbn      = {978-1-937284-55-8},
  timestamp = {Mon, 16 Sep 2019 17:00:01 +0200},
  biburl    = {https://dblp.org/rec/bib/conf/bionlp/2013-s},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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