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ORCIDBibTeX records: Robin Haw
@article{DBLP:journals/biodb/OrlicMilacicRMWJSTGSTRGSMHWBCHSDW24,
author = {Marija Orlic{-}Milacic and
Karen Rothfels and
Lisa Matthews and
Adam J. Wright and
Bijay Jassal and
Veronica Shamovsky and
Quang M. Trinh and
Marc Gillespie and
Cristoffer Sevilla and
Krishna Tiwari and
Eliot Ragueneau and
Chuqiao Gong and
Ralf Stephan and
Bruce May and
Robin Haw and
Joel Weiser and
Deidre Beavers and
Patrick Conley and
Henning Hermjakob and
Lincoln D. Stein and
Peter D'Eustachio and
Guanming Wu},
title = {Pathway-based, reaction-specific annotation of disease variants for
elucidation of molecular phenotypes},
journal = {Database J. Biol. Databases Curation},
volume = {2024},
year = {2024},
url = {https://doi.org/10.1093/database/baae031},
doi = {10.1093/DATABASE/BAAE031},
timestamp = {Fri, 31 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/OrlicMilacicRMWJSTGSTRGSMHWBCHSDW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinezHGSDXBCHBSH23,
author = {Teresa De Jesus Martinez and
Elliot A. Hershberg and
Emma Guo and
Garrett Stevens and
Colin M. Diesh and
Peter Xie and
Caroline Bridge and
Scott Cain and
Robin Haw and
Robert M. Buels and
Lincoln D. Stein and
Ian H. Holmes},
title = {JBrowse Jupyter: a Python interface to JBrowse 2},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad032},
doi = {10.1093/BIOINFORMATICS/BTAD032},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinezHGSDXBCHBSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WrightORWTJHS22,
author = {Adam J. Wright and
Marija Orlic{-}Milacic and
Karen Rothfels and
Joel Weiser and
Quang M. Trinh and
Bijay Jassal and
Robin Haw and
Lincoln D. Stein},
title = {Evaluating the predictive accuracy of curated biological pathways
in a public knowledgebase},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac009},
doi = {10.1093/DATABASE/BAAC009},
timestamp = {Mon, 30 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WrightORWTJHS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GillespieJSMRSG22,
author = {Marc Gillespie and
Bijay Jassal and
Ralf Stephan and
Marija Milacic and
Karen Rothfels and
Andrea Senff{-}Ribeiro and
Johannes Griss and
Cristoffer Sevilla and
Lisa Matthews and
Chuqiao Gong and
Chuan Deng and
Thawfeek M. Varusai and
Eliot Ragueneau and
Yusra Haider and
Bruce May and
Veronica Shamovsky and
Joel Weiser and
Timothy Brunson and
Nasim Sanati and
Liam Beckman and
Xiang Shao and
Antonio Fabregat and
Konstantinos Sidiropoulos and
Julieth Murillo and
Guilherme Viteri and
Justin Cook and
Solomon Shorser and
Gary D. Bader and
Emek Demir and
Chris Sander and
Robin Haw and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The reactome pathway knowledgebase 2022},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {687--692},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1028},
doi = {10.1093/NAR/GKAB1028},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GillespieJSMRSG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JassalMVGLFSCGH20,
author = {Bijay Jassal and
Lisa Matthews and
Guilherme Viteri and
Chuqiao Gong and
Pascual Lorente and
Antonio Fabregat and
Konstantinos Sidiropoulos and
Justin Cook and
Marc Gillespie and
Robin Haw and
Fred Loney and
Bruce May and
Marija Milacic and
Karen Rothfels and
Cristoffer Sevilla and
Veronica Shamovsky and
Solomon Shorser and
Thawfeek M. Varusai and
Joel Weiser and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The reactome pathway knowledgebase},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D498--D503},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz1031},
doi = {10.1093/NAR/GKZ1031},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JassalMVGLFSCGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/mimb/HawLOHW20,
author = {Robin Haw and
Fred Loney and
Edison Ong and
Yongqun He and
Guanming Wu},
editor = {Stefan Canzar and
Francisca Rojas Ringeling},
title = {Perform Pathway Enrichment Analysis Using ReactomeFIViz},
booktitle = {Protein-Protein Interaction Networks, Methods and Protocols},
series = {Methods in Molecular Biology},
volume = {2074},
pages = {165--179},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-1-4939-9873-9\_13},
doi = {10.1007/978-1-4939-9873-9\_13},
timestamp = {Tue, 07 May 2024 20:28:21 +0200},
biburl = {https://dblp.org/rec/series/mimb/HawLOHW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ViteriMVGMCWSSF19,
author = {Guilherme Viteri and
Lisa Matthews and
Thawfeek M. Varusai and
Marc Gillespie and
Marija Milacic and
Justin Cook and
Joel Weiser and
Solomon Shorser and
Konstantinos Sidiropoulos and
Antonio Fabregat and
Robin Haw and
Guanming Wu and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome and {ORCID} - fine-grained credit attribution for community
curation},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz123},
year = {2019},
url = {https://doi.org/10.1093/database/baz123},
doi = {10.1093/DATABASE/BAZ123},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ViteriMVGMCWSSF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RougnyTMBCBDMDB19,
author = {Adrien Rougny and
Vasundra Tour{\'{e}} and
Stuart L. Moodie and
Irina Balaur and
Tobias Czauderna and
Hanna Borlinghaus and
Ugur Dogrusoz and
Alexander Mazein and
Andreas Dr{\"{a}}ger and
Michael L. Blinov and
Alice Vill{\'{e}}ger and
Robin Haw and
Emek Demir and
Huaiyu Mi and
Anatoly A. Sorokin and
Falk Schreiber and
Augustin Luna},
title = {Systems Biology Graphical Notation: Process Description language Level
1 Version 2.0},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {2},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0022},
doi = {10.1515/JIB-2019-0022},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FabregatJMSGGHJ18,
author = {Antonio Fabregat and
Steven Jupe and
Lisa Matthews and
Konstantinos Sidiropoulos and
Marc Gillespie and
Phani V. Garapati and
Robin Haw and
Bijay Jassal and
Florian Korninger and
Bruce May and
Marija Milacic and
Corina Duenas and
Karen Rothfels and
Cristoffer Sevilla and
Veronica Shamovsky and
Solomon Shorser and
Thawfeek M. Varusai and
Guilherme Viteri and
Joel Weiser and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The Reactome Pathway Knowledgebase},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D649--D655},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1132},
doi = {10.1093/NAR/GKX1132},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FabregatJMSGGHJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SidiropoulosVSJ17,
author = {Konstantinos Sidiropoulos and
Guilherme Viteri and
Cristoffer Sevilla and
Steven Jupe and
Marissa Webber and
Marija Orlic{-}Milacic and
Bijay Jassal and
Bruce May and
Veronica Shamovsky and
Corina Duenas and
Karen Rothfels and
Lisa Matthews and
Heeyeon Song and
Lincoln Stein and
Robin Haw and
Peter D'Eustachio and
Peipei Ping and
Henning Hermjakob and
Antonio Fabregat},
title = {Reactome enhanced pathway visualization},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3461--3467},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx441},
doi = {10.1093/BIOINFORMATICS/BTX441},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SidiropoulosVSJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FabregatSGGHHJJ16,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Phani V. Garapati and
Marc Gillespie and
Kerstin Hausmann and
Robin Haw and
Bijay Jassal and
Steven Jupe and
Florian Korninger and
Sheldon J. McKay and
Lisa Matthews and
Bruce May and
Marija Milacic and
Karen Rothfels and
Veronica Shamovsky and
Marissa Webber and
Joel Weiser and
Mark Williams and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The Reactome pathway Knowledgebase},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {481--487},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1351},
doi = {10.1093/NAR/GKV1351},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FabregatSGGHHJJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BohlerWKPCHHPE16,
author = {Anwesha Bohler and
Guanming Wu and
Martina Kutmon and
Leontius Adhika Pradhana and
Susan L. Coort and
Kristina Hanspers and
Robin Haw and
Alexander R. Pico and
Chris T. A. Evelo},
title = {Reactome from a WikiPathways Perspective},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {5},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004941},
doi = {10.1371/JOURNAL.PCBI.1004941},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BohlerWKPCHHPE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MiSMCDHLNSV15,
author = {Huaiyu Mi and
Falk Schreiber and
Stuart L. Moodie and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Augustin Luna and
Nicolas Le Nov{\`{e}}re and
Anatoly A. Sorokin and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Activity Flow language Level 1
Version 1.2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-265},
doi = {10.2390/BIECOLL-JIB-2015-265},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MiSMCDHLNSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SorokinNLCDHMMS15,
author = {Anatoly A. Sorokin and
Nicolas Le Nov{\`{e}}re and
Augustin Luna and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Huaiyu Mi and
Stuart L. Moodie and
Falk Schreiber and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Entity Relationship language Level
1 Version 2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-264},
doi = {10.2390/BIECOLL-JIB-2015-264},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SorokinNLCDHMMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CroftMHMWWCGGKJJMMPRSSWBHSD14,
author = {David Croft and
Antonio Fabregat Mundo and
Robin Haw and
Marija Milacic and
Joel Weiser and
Guanming Wu and
Michael Caudy and
Phani V. Garapati and
Marc Gillespie and
Maulik R. Kamdar and
Bijay Jassal and
Steven Jupe and
Lisa Matthews and
Bruce May and
Stanislav Palatnik and
Karen Rothfels and
Veronica Shamovsky and
Heeyeon Song and
Mark Williams and
Ewan Birney and
Henning Hermjakob and
Lincoln Stein and
Peter D'Eustachio},
title = {The Reactome pathway knowledgebase},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {472--477},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1102},
doi = {10.1093/NAR/GKT1102},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CroftMHMWWCGGKJJMMPRSSWBHSD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14,
author = {Marcela K. Monaco and
Joshua C. Stein and
Sushma Naithani and
Sharon Wei and
Palitha Dharmawardhana and
Sunita Kumari and
Vindhya Amarasinghe and
Ken Youens{-}Clark and
James Thomason and
Justin Preece and
Shiran Pasternak and
Andrew Olson and
Yinping Jiao and
Zhenyuan Lu and
Daniel M. Bolser and
Arnaud Kerhornou and
Daniel M. Staines and
Brandon Walts and
Guanming Wu and
Peter D'Eustachio and
Robin Haw and
David Croft and
Paul J. Kersey and
Lincoln Stein and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2013: comparative plant genomics resources},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1193--1199},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1110},
doi = {10.1093/NAR/GKT1110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/WuDDHS14,
author = {Guanming Wu and
Eric T. Dawson and
Adrian Duong and
Robin Haw and
Lincoln Stein},
title = {ReactomeFIViz: the Reactome {FI} Cytoscape app for pathway and network-based
data analysis},
journal = {F1000Research},
volume = {3},
pages = {146},
year = {2014},
url = {https://doi.org/10.12688/f1000research.4431.1},
doi = {10.12688/F1000RESEARCH.4431.1},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/WuDDHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GubermanAA11,
author = {Jonathan M. Guberman and
Jiye Ai and
Olivier Arnaiz and
Joachim Baran and
Andrew Blake and
Richard A. Baldock and
Claude Chelala and
David Croft and
Anthony Cros and
Rosalind J. Cutts and
Alex Di G{\'{e}}nova and
Simon A. Forbes and
Takatomo Fujisawa and
Emanuela Gadaleta and
David M. Goodstein and
Gunes Gundem and
Bernard Haggarty and
Syed Haider and
Matthew Hall and
Todd W. Harris and
Robin Haw and
Shen Hu and
Simon J. Hubbard and
Jack Hsu and
Vivek Iyer and
Philip Jones and
Toshiaki Katayama and
Rhoda Kinsella and
Lei Kong and
Daniel Lawson and
Yong Liang and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Jie Luo and
Michael J. Lush and
Jeremy C. Mason and
Fran{\c{c}}ois Moreews and
Nelson Ndegwa and
Darren J. Oakley and
Christian Perez{-}Llamas and
Michael Primig and
Elena Rivkin and
Steven Rosanoff and
Rebecca Shepherd and
Reinhard Simon and
William C. Skarnes and
Damian Smedley and
Linda Sperling and
William Spooner and
Peter Stevenson and
Kevin R. Stone and
Jon W. Teague and
Jun Wang and
Jianxin Wang and
Brett Whitty and
David Tai Wai Wong and
Marie Wong{-}Erasmus and
Long Yao and
Ken Youens{-}Clark and
Christina K. Yung and
Junjun Zhang and
Arek Kasprzyk},
title = {BioMart Central Portal: an open database network for the biological
community},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar041},
doi = {10.1093/DATABASE/BAR041},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GubermanAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HawCYNDHS11,
author = {Robin Haw and
David Croft and
Christina K. Yung and
Nelson Ndegwa and
Peter D'Eustachio and
Henning Hermjakob and
Lincoln D. Stein},
title = {The Reactome BioMart},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar031},
doi = {10.1093/DATABASE/BAR031},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HawCYNDHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11,
author = {David Croft and
Gavin O'Kelly and
Guanming Wu and
Robin Haw and
Marc Gillespie and
Lisa Matthews and
Michael Caudy and
Phani V. Garapati and
Gopal Gopinath and
Bijay Jassal and
Steven Jupe and
Irina Kalatskaya and
Shahana Mahajan and
Bruce May and
Nelson Ndegwa and
Esther Schmidt and
Veronica Shamovsky and
Christina K. Yung and
Ewan Birney and
Henning Hermjakob and
Peter D'Eustachio and
Lincoln Stein},
title = {Reactome: a database of reactions, pathways and biological processes},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {691--697},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1018},
doi = {10.1093/NAR/GKQ1018},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlfaranoAA05,
author = {C. Alfarano and
C. E. Andrade and
K. Anthony and
N. Bahroos and
Martha Bajec and
K. Bantoft and
Doron Betel and
B. Bobechko and
K. Boutilier and
E. Burgess and
K. Buzadzija and
R. Cavero and
C. D'Abreo and
Ian M. Donaldson and
D. Dorairajoo and
Michel Justin Dumontier and
M. R. Dumontier and
V. Earles and
R. Farrall and
Howard J. Feldman and
E. Garderman and
Y. Gong and
R. Gonzaga and
V. Grytsan and
E. Gryz and
V. Gu and
E. Haldorsen and
A. Halupa and
Robin Haw and
A. Hrvojic and
L. Hurrell and
Ruth Isserlin and
F. Jack and
F. Juma and
A. Khan and
T. Kon and
S. Konopinsky and
V. Le and
E. Lee and
S. Ling and
M. Magidin and
J. Moniakis and
J. Montojo and
S. Moore and
B. Muskat and
I. Ng and
J. P. Paraiso and
Benjamin D. Parker and
Greg Pintilie and
R. Pirone and
John J. Salama and
S. Sgro and
T. Shan and
Y. Shu and
J. Siew and
D. Skinner and
Kevin A. Snyder and
R. Stasiuk and
D. Strumpf and
Brigitte Tuekam and
S. Tao and
Z. Wang and
M. White and
R. Willis and
Cheryl Wolting and
S. Wong and
A. Wrong and
C. Xin and
R. Yao and
B. Yates and
Shudong Zhang and
K. Zheng and
Tony Pawson and
B. F. Francis Ouellette and
Christopher W. V. Hogue},
title = {The Biomolecular Interaction Network Database and related tools 2005
update},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {418--424},
year = {2005},
url = {https://doi.org/10.1093/nar/gki051},
doi = {10.1093/NAR/GKI051},
timestamp = {Tue, 24 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AlfaranoAA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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