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ORCIDBibTeX records: Yoshihide Hayashizaki
@article{DBLP:journals/nar/AbugessaisaRLSH21,
author = {Imad Abugessaisa and
Jordan A. Ramilowski and
Marina Lizio and
Jesicca Severin and
Akira Hasegawa and
Jayson Harshbarger and
Atsushi Kondo and
Shuhei Noguchi and
Chi Wai Yip and
Jasmine Li Ching Ooi and
Michihira Tagami and
Fumi Hori and
Saumya Agrawal and
Chung{-}Chau Hon and
M{\'{e}}lissa Cardon and
Shuya Ikeda and
Hiromasa Ono and
Hidemasa Bono and
Masaki Kato and
Kosuke Hashimoto and
Alessandro Bonetti and
Norio Kobayashi and
Jay W. Shin and
Michiel J. L. de Hoon and
Yoshihide Hayashizaki and
Piero Carninci and
Hideya Kawaji and
Takeya Kasukawa},
title = {{FANTOM} enters 20th year: expansion of transcriptomic atlases and
functional annotation of non-coding RNAs},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D892--D898},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1054},
doi = {10.1093/NAR/GKAA1054},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AbugessaisaRLSH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LizioANKHHHSOHC19,
author = {Marina Lizio and
Imad Abugessaisa and
Shuhei Noguchi and
Atsushi Kondo and
Akira Hasegawa and
Chung{-}Chau Hon and
Michiel J. L. de Hoon and
Jessica Severin and
Shinya Oki and
Yoshihide Hayashizaki and
Piero Carninci and
Takeya Kasukawa and
Hideya Kawaji},
title = {Update of the {FANTOM} web resource: expansion to provide additional
transcriptome atlases},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D752--D758},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1099},
doi = {10.1093/NAR/GKY1099},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LizioANKHHHSOHC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaillieBHCGNBST18,
author = {J. Kenneth Baillie and
Andrew Bretherick and
Christopher S. Haley and
Sara Clohisey and
Alan Gray and
Lucile P. A. Neyton and
Jeffrey Barrett and
Eli A. Stahl and
Albert Tenesa and
Robin Andersson and
J. Ben Brown and
Geoffrey J. Faulkner and
Marina Lizio and
Ulf Schaefer and
Carsten O. Daub and
Masayoshi Itoh and
Naoto Kondo and
Timo Lassmann and
Jun Kawai and
IIBDGC Consortium and
Damian Mole and
Vladimir B. Bajic and
Peter Heutink and
Michael Rehli and
Hideya Kawaji and
Albin Sandelin and
Harukazu Suzuki and
Jack Satsangi and
Christine A. Wells and
Nir Hacohen and
Tom C. Freeman and
Yoshihide Hayashizaki and
Piero Carninci and
Alistair R. R. Forrest and
David A. Hume},
title = {Shared activity patterns arising at genetic susceptibility loci reveal
underlying genomic and cellular architecture of human disease},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {3},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005934},
doi = {10.1371/JOURNAL.PCBI.1005934},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BaillieBHCGNBST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LizioHANKSMAMML17,
author = {Marina Lizio and
Jayson Harshbarger and
Imad Abugessaisa and
Shuei Noguchi and
Atsushi Kondo and
Jessica Severin and
Chris Mungall and
David J. Arenillas and
Anthony Mathelier and
Yulia A. Medvedeva and
Andreas Lennartsson and
Finn Drabl{\o}s and
Jordan A. Ramilowski and
Owen J. L. Rackham and
Julian Gough and
Robin Andersson and
Albin Sandelin and
Hans Ienasescu and
Hiromasa Ono and
Hidemasa Bono and
Yoshihide Hayashizaki and
Piero Carninci and
Alistair R. R. Forrest and
Takeya Kasukawa and
Hideya Kawaji},
title = {Update of the {FANTOM} web resource: high resolution transcriptome
of diverse cell types in mammals},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D737--D743},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw995},
doi = {10.1093/NAR/GKW995},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LizioHANKSMAMML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AbugessaisaSSKH16,
author = {Imad Abugessaisa and
Hisashi Shimoji and
Serkan Sahin and
Atsushi Kondo and
Jayson Harshbarger and
Marina Lizio and
Yoshihide Hayashizaki and
Piero Carninci and
Alistair R. R. Forrest and
Takeya Kasukawa and
Hideya Kawaji},
title = {{FANTOM5} transcriptome catalog of cellular states based on Semantic
MediaWiki},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw105},
doi = {10.1093/DATABASE/BAW105},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AbugessaisaSSKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/IenasescuLAVRCV16,
author = {Hans Ienasescu and
Kang Li and
Robin Andersson and
Morana Vitezic and
Sarah Rennie and
Yun Chen and
Kristoffer Vitting{-}Seerup and
Emil Lagoni and
Mette Boyd and
Jette Bornholdt and
Michiel J. L. de Hoon and
Hideya Kawaji and
Timo Lassmann and
The Fantom Consortium and
Yoshihide Hayashizaki and
Alistair R. R. Forrest and
Piero Carninci and
Albin Sandelin},
title = {On-the-fly selection of cell-specific enhancers, genes, miRNAs and
proteins across the human body using SlideBase},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw144},
doi = {10.1093/DATABASE/BAW144},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/IenasescuLAVRCV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AitkenMAIKLDACF15,
author = {Stuart Aitken and
Shigeyuki Magi and
Ahmad M. N. Alhendi and
Masayoshi Itoh and
Hideya Kawaji and
Timo Lassmann and
Carsten O. Daub and
Erik Arner and
Piero Carninci and
Alistair R. R. Forrest and
Yoshihide Hayashizaki and
Levon M. Khachigian and
Mariko Okada{-}Hatakeyama and
Colin A. M. Semple},
title = {Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs
in the Immediate-Early Response},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {4},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004217},
doi = {10.1371/JOURNAL.PCBI.1004217},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/AitkenMAIKLDACF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LassmannHDCH14,
author = {Timo Lassmann and
Akira Hasegawa and
Carsten O. Daub and
Piero Carninci and
Yoshihide Hayashizaki},
title = {{MOIRAI:} {A} Compact Workflow System for {CAGE} Analysis},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {144},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-144},
doi = {10.1186/1471-2105-15-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LassmannHDCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/ConsortiumFKRB14,
author = {The Fantom Consortium and
RIKEN PMII and
RIKEN CLST (DGT) and
Alistair R. R. Forrest and
Hideya Kawaji and
Michael Rehli and
J. Kenneth Baillie and
Michiel J. L. de Hoon and
Vanja Haberle and
Timo Lassmann and
Ivan V. Kulakovskiy and
Marina Lizio and
Masayoshi Itoh and
Robin Andersson and
Christopher J. Mungall and
Terrence F. Meehan and
Sebastian Schmeier and
Nicolas Bertin and
Mette J{\o}rgensen and
Emmanuel Dimont and
Erik Arner and
Christian Schmidl and
Ulf Schaefer and
Yulia A. Medvedeva and
Charles Plessy and
Morana Vitezic and
Jessica Severin and
Colin A. M. Semple and
Yuri Ishizu and
Robert S. Young and
Margherita Francescatto and
Intikhab Alam and
Davide Albanese and
Gabriel M. Altschuler and
Takahiro Arakawa and
John A. C. Archer and
Peter Arner and
Magda Babina and
Sarah Rennie and
Piotr J. Balwierz and
Anthony G. Beckhouse and
Swati Pradhan{-}Bhatt and
Judith A. Blake and
Antje Blumenthal and
Beatrice Bodega and
Alessandro Bonetti and
James Briggs and
Frank Brombacher and
A. Maxwell Burroughs and
Andrea Califano and
Carlo V. Cannistraci and
Daniel Carbajo and
Yun Chen and
Marco Chierici and
Yari Ciani and
Hans Clevers and
Emiliano Dalla and
Carrie A. Davis and
Michael Detmar and
Alexander D. Diehl and
Taeko Dohi and
Finn Drabl{\o}s and
Albert S. B. Edge and
Matthias Edinger and
Karl Ekwall and
Mitsuhiro Endoh and
Hideki Enomoto and
Michela Fagiolini and
Lynsey Fairbairn and
Hai Fang and
Mary C. Farach{-}Carson and
Geoffrey J. Faulkner and
Alexander V. Favorov and
Malcolm E. Fisher and
Martin C. Frith and
Rie Fujita and
Shiro Fukuda and
Cesare Furlanello and
Masaaki Furuno and
Jun{-}ichi Furusawa and
Teunis B. Geijtenbeek and
Andrew P. Gibson and
Thomas R. Gingeras and
Daniel Goldowitz and
Julian Gough and
Sven Guhl and
Reto Guler and
Stefano Gustincich and
Thomas J. Ha and
Masahide Hamaguchi and
Mitsuko Hara and
Matthias Harbers and
Jayson Harshbarger and
Akira Hasegawa and
Yuki Hasegawa and
Takehiro Hashimoto and
Meenhard Herlyn and
Kelly J. Hitchens and
Shannan J. Ho Sui and
Oliver M. Hofmann and
Ilka Hoof and
Fumi Hori and
Lukasz Huminiecki and
Kei Iida and
Tomokatsu Ikawa and
Boris R. Jankovic and
Hui Jia and
Anagha Joshi and
Giuseppe Jurman and
Bogumil Kaczkowski and
Chieko Kai and
Kaoru Kaida and
Ai Kaiho and
Kazuhiro Kajiyama and
Mutsumi Kanamori{-}Katayama and
Artem S. Kasianov and
Takeya Kasukawa and
Shintaro Katayama and
Sachi Kato and
Shuji Kawaguchi and
Hiroshi Kawamoto and
Yuki I. Kawamura and
Tsugumi Kawashima and
Judith S. Kempfle and
Tony J. Kenna and
Juha Kere and
Levon M. Khachigian and
Toshio Kitamura and
S. Peter Klinken and
Alan J. Knox and
Miki Kojima and
Soichi Kojima and
Naoto Kondo and
Haruhiko Koseki and
Shigeo Koyasu and
Sarah Krampitz and
Atsutaka Kubosaki and
Andrew T. Kwon and
Jeroen F. J. Laros and
Weonju Lee and
Andreas Lennartsson and
Kang Li and
Berit Lilje and
Leonard Lipovich and
Alan Mackay{-}Sim and
Ri{-}ichiroh Manabe and
Jessica Cara Mar and
Benoit Marchand and
Anthony Mathelier and
Niklas Mejhert and
Alison M. Meynert and
Yosuke Mizuno and
David A. de Lima Morais and
Hiromasa Morikawa and
Mitsuru Morimoto and
Kazuyo Moro and
Efthymios Motakis and
Hozumi Motohashi and
Christine Mummery and
Mitsuyoshi Murata and
Sayaka Nagao{-}Sato and
Yutaka Nakachi and
Fumio Nakahara and
Toshiyuki Nakamura and
Yukio Nakamura and
Kenichi Nakazato and
Erik van Nimwegen and
Noriko Ninomiya and
Hiromi Nishiyori and
Shohei Noma and
Tadasuke Nozaki and
Soichi Ogishima and
Naganari Ohkura and
Hiroko Ohmiya and
Hiroshi Ohno and
Mitsuhiro Ohshima and
Mariko Okada{-}Hatakeyama and
Yasushi Okazaki and
Valerio Orlando and
Dmitry A. Ovchinnikov and
Arnab Pain and
Robert Passier and
Margaret Patrikakis and
Helena Persson and
Silvano Piazza and
James G. D. Prendergast and
Owen J. L. Rackham and
Jordan A. Ramilowski and
Mamoon Rashid and
Timothy Ravasi and
Patrizia Rizzu and
Marco Roncador and
Sugata Roy and
Morten B. Rye and
Eri Saijyo and
Antti Sajantila and
Akiko Saka and
Shimon Sakaguchi and
Mizuho Sakai and
Hiroki Sato and
Hironori Sato and
Suzana Savvi and
Alka Saxena and
Claudio Schneider and
Erik A. Schultes and
Gundula G. Schulze{-}Tanzil and
Anita Schwegmann and
Thierry Sengstag and
Guojun Sheng and
Hisashi Shimoji and
Yishai Shimoni and
Jay W. Shin and
Christophe Simon and
Daisuke Sugiyama and
Takaaki Sugiyama and
Masanori Suzuki and
Naoko Suzuki and
Rolf K. Swoboda and
Peter A. C. 't Hoen and
Michihira Tagami and
Naoko Takahashi and
Jun Takai and
Hiroshi Tanaka and
Hideki Tatsukawa and
Zuotian Tatum and
Mark Thompson and
Hiroo Toyoda and
Tetsuro Toyoda and
Eivind Valen and
Marc van de Wetering and
Linda M. van den Berg and
Roberto Verardo and
Dipti Vijayan and
Ilya E. Vorontsov and
Wyeth W. Wasserman and
Shoko Watanabe and
Christine A. Wells and
Louise N. Winteringham and
Ernst Wolvetang and
Emily J. Wood and
Yoko Yamaguchi and
Masayuki Yamamoto and
Misako Yoneda and
Yohei Yonekura and
Shigehiro Yoshida and
Susan E. Zabierowski and
Peter G. Zhang and
Xiaobei Zhao and
Silvia Zucchelli and
Kim M. Summers and
Harukazu Suzuki and
Carsten O. Daub and
Jun Kawai and
Peter Heutink and
Winston Hide and
Tom C. Freeman and
Boris Lenhard and
Vladimir B. Bajic and
Martin S. Taylor and
Vsevolod J. Makeev and
Albin Sandelin and
David A. Hume and
Piero Carninci and
Yoshihide Hayashizaki},
title = {A promoter-level mammalian expression atlas},
journal = {Nat.},
volume = {507},
number = {7493},
pages = {462--470},
year = {2014},
url = {https://doi.org/10.1038/nature13182},
doi = {10.1038/NATURE13182},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nature/ConsortiumFKRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LassmannHD11,
author = {Timo Lassmann and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {SAMStat: monitoring biases in next generation sequencing data},
journal = {Bioinform.},
volume = {27},
number = {1},
pages = {130--131},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq614},
doi = {10.1093/BIOINFORMATICS/BTQ614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LassmannHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KawajiSLFNRSISCHD11,
author = {Hideya Kawaji and
Jessica Severin and
Marina Lizio and
Alistair R. R. Forrest and
Erik van Nimwegen and
Michael Rehli and
Kate Schroder and
Katharine M. Irvine and
Harukazu Suzuki and
Piero Carninci and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {Update of the {FANTOM} web resource: from mammalian transcriptional
landscape to its dynamic regulation},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {856--860},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1112},
doi = {10.1093/NAR/GKQ1112},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KawajiSLFNRSISCHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MasuyaMKNYMDTWTIMTHKFKWNYMFMOHMOT11,
author = {Hiroshi Masuya and
Yuko Makita and
Norio Kobayashi and
Koro Nishikata and
Yuko Yoshida and
Yoshiki Mochizuki and
Koji Doi and
Terue Takatsuki and
Kazunori Waki and
Nobuhiko Tanaka and
Manabu Ishii and
Akihiro Matsushima and
Satoshi Takahashi and
Atsushi Hijikata and
Kouji Kozaki and
Teiichi Furuichi and
Hideya Kawaji and
Shigeharu Wakana and
Yukio Nakamura and
Atsushi Yoshiki and
Takehide Murata and
Kaoru Fukami{-}Kobayashi and
S. Sujatha Mohan and
Osamu Ohara and
Yoshihide Hayashizaki and
Riichiro Mizoguchi and
Yuichi Obata and
Tetsuro Toyoda},
title = {The {RIKEN} integrated database of mammals},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {861--870},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1078},
doi = {10.1093/NAR/GKQ1078},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MasuyaMKNYMDTWTIMTHKFKWNYMFMOHMOT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KimuraHAIDLAHKK11,
author = {Yasumasa Kimura and
Michiel J. L. de Hoon and
Shintaro Aoki and
Yuri Ishizu and
Carsten O. Daub and
Alexander Lezhava and
Erik Arner and
Yoshihide Hayashizaki and
Yuki Kawai and
Yasushi Kogo},
title = {Optimization of turn-back primers in isothermal amplification},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {909--911},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112499},
doi = {10.1109/BIBMW.2011.6112499},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/KimuraHAIDLAHKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArnerHD10,
author = {Erik Arner and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {NGSView: an extensible open source editor for next-generation sequencing
data},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {125--126},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp611},
doi = {10.1093/BIOINFORMATICS/BTP611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArnerHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoHGDHF09,
author = {Takehiro Hashimoto and
Michiel J. L. de Hoon and
Sean M. Grimmond and
Carsten O. Daub and
Yoshihide Hayashizaki and
Geoffrey J. Faulkner},
title = {Probabilistic resolution of multi-mapping reads in massively parallel
sequencing data using MuMRescueLite},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2613--2614},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp438},
doi = {10.1093/BIOINFORMATICS/BTP438},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoHGDHF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LassmannHD09,
author = {Timo Lassmann and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {TagDust - a program to eliminate artifacts from next generation sequencing
data},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2839--2840},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp527},
doi = {10.1093/BIOINFORMATICS/BTP527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LassmannHD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KawajiHD09,
author = {Hideya Kawaji and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {{SDRF2GRAPH} - a visualization tool of a spreadsheet-based description
of experimental processes},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-133},
doi = {10.1186/1471-2105-10-133},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KawajiHD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarKSIHSHQ09,
author = {Jessica Cara Mar and
Yasumasa Kimura and
Kate Schroder and
Katharine M. Irvine and
Yoshihide Hayashizaki and
Harukazu Suzuki and
David A. Hume and
John Quackenbush},
title = {Data-driven normalization strategies for high-throughput quantitative
{RT-PCR}},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-110},
doi = {10.1186/1471-2105-10-110},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MarKSIHSHQ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShimokawaOKFKCH07,
author = {Kazuro Shimokawa and
Yuko Okamura{-}Oho and
Takio Kurita and
Martin C. Frith and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki},
title = {Large-scale clustering of {CAGE} tag expression data},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-161},
doi = {10.1186/1471-2105-8-161},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShimokawaOKFKCH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrahmacharySYHTCKLHKKCHB06,
author = {Manisha Brahmachary and
Christian Sch{\"{o}}nbach and
Liang Yang and
Enli Huang and
Sin Lam Tan and
Rajesh Chowdhary and
S. P. T. Krishnan and
Chin{-}Yo Lin and
David A. Hume and
Chikatoshi Kai and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki and
Vladimir B. Bajic},
title = {Computational promoter analysis of mouse, rat and human antimicrobial
peptide-coding genes},
journal = {{BMC} Bioinform.},
volume = {7},
number = {{S-5}},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-S5-S8},
doi = {10.1186/1471-2105-7-S5-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrahmacharySYHTCKLHKKCHB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ForrestTFGFTSKKHG06,
author = {Alistair R. R. Forrest and
Darrin F. Taylor and
J. Lynn Fink and
M. Milena Gongora and
Cameron Flegg and
Rohan D. Teasdale and
Harukazu Suzuki and
Mutsumi Kanamori and
Chikatoshi Kai and
Yoshihide Hayashizaki and
Sean M. Grimmond},
title = {PhosphoregDB: The tissue and sub-cellular distribution of mammalian
protein kinases and phosphatases},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {82},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-82},
doi = {10.1186/1471-2105-7-82},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ForrestTFGFTSKKHG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinkADZHTKKCHT06,
author = {J. Lynn Fink and
Rajith N. Aturaliya and
Melissa J. Davis and
Fasheng Zhang and
Kelly Hanson and
Melvena S. Teasdale and
Chikatoshi Kai and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki and
Rohan D. Teasdale},
title = {{LOCATE:} a mouse protein subcellular localization database},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {213--217},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj069},
doi = {10.1093/NAR/GKJ069},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FinkADZHTKKCHT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KawajiKFKKKCH06,
author = {Hideya Kawaji and
Takeya Kasukawa and
Shiro Fukuda and
Shintaro Katayama and
Chikatoshi Kai and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki},
title = {{CAGE} Basic/Analysis Databases: the {CAGE} resource for comprehensive
promoter analysis},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {632--636},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj034},
doi = {10.1093/NAR/GKJ034},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KawajiKFKKKCH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KitagawaWKYHYHSOSMMKCHKT05,
author = {Noriyuki Kitagawa and
Takanori Washio and
Shunichi Kosugi and
Tomoya Yamashita and
Kenji Higashi and
Hiroshi Yanagawa and
Kenichi Higo and
Koji Satoh and
Yasuhiro Ohtomo and
Tomomi Sunako and
Kazuo Murakami and
Kenichi Matsubara and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki and
Shoshi Kikuchi and
Masaru Tomita},
title = {Computational analysis suggests that alternative first exons are involved
in tissue-specific transcription in rice (Oryza sativa)},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {1758--1763},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti253},
doi = {10.1093/BIOINFORMATICS/BTI253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KitagawaWKYHYHSOSMMKCHKT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PangSETCWLHM05,
author = {Ken C. Pang and
Stuart Stephen and
P{\"{a}}r G. Engstr{\"{o}}m and
Khairina Tajul{-}Arifin and
Weisan Chen and
Claes Wahlestedt and
Boris Lenhard and
Yoshihide Hayashizaki and
John S. Mattick},
title = {RNAdb - a comprehensive mammalian noncoding {RNA} database},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {125--130},
year = {2005},
url = {https://doi.org/10.1093/nar/gki089},
doi = {10.1093/NAR/GKI089},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PangSETCWLHM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KatayamaKH04,
author = {Shintaro Katayama and
Mutsumi Kanamori and
Yoshihide Hayashizaki},
title = {Integrated analysis of the genome and the transcriptome by {FANTOM}},
journal = {Briefings Bioinform.},
volume = {5},
number = {3},
pages = {249--258},
year = {2004},
url = {https://doi.org/10.1093/bib/5.3.249},
doi = {10.1093/BIB/5.3.249},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KatayamaKH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SuzukiYSSCMKACKHTNS04,
author = {Yutaka Suzuki and
Riu Yamashita and
Matsuyuki Shirota and
Yuta Sakakibara and
Joe Chiba and
Junko Mizushima{-}Sugano and
Alexander E. Kel and
Takahiro Arakawa and
Piero Carninci and
Jun Kawai and
Yoshihide Hayashizaki and
Toshihisa Takagi and
Kenta Nakai and
Sumio Sugano},
title = {Large-scale collection and characterization of promoters of human
and mouse genes},
journal = {Silico Biol.},
volume = {4},
number = {4},
pages = {429--444},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00146},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SuzukiYSSCMKACKHTNS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NikaidoSWTAHO04,
author = {Itoshi Nikaido and
Chika Saito and
Akiko Wakamoto and
Yasuhiro Tomaru and
Takahiro Arakawa and
Yoshihide Hayashizaki and
Yasushi Okazaki},
title = {{EICO} (Expression-based Imprint Candidate Organizer): finding disease-related
imprinted genes},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {548--551},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh093},
doi = {10.1093/NAR/GKH093},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NikaidoSWTAHO04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaitoSH03,
author = {Rintaro Saito and
Harukazu Suzuki and
Yoshihide Hayashizaki},
title = {Construction of reliable protein-protein interaction networks with
a new interaction generality measure},
journal = {Bioinform.},
volume = {19},
number = {6},
pages = {756--763},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg070},
doi = {10.1093/BIOINFORMATICS/BTG070},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaitoSH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KasukawaBHOM03,
author = {Takeya Kasukawa and
Hidemasa Bono and
Yoshihide Hayashizaki and
Yasushi Okazaki and
Hideo Matsuda},
title = {MaXML: mouse annotation {XML}},
journal = {Silico Biol.},
volume = {4},
number = {1},
pages = {7--15},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00113},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KasukawaBHOM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BonoKFHO03,
author = {Hidemasa Bono and
Takeya Kasukawa and
Masaaki Furuno and
Yoshihide Hayashizaki and
Yasushi Okazaki},
title = {{FANTOM} {DB:} database of Functional Annotation of {RIKEN} Mouse
cDNA Clones},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {116--118},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.116},
doi = {10.1093/NAR/30.1.116},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BonoKFHO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BonoKHO03,
author = {Hidemasa Bono and
Takeya Kasukawa and
Yoshihide Hayashizaki and
Yasushi Okazaki},
title = {{READ:} {RIKEN} Expression Array Database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {211--213},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.211},
doi = {10.1093/NAR/30.1.211},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BonoKHO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BuersteddeAWCHKP03,
author = {Jean{-}Marie Buerstedde and
Hiroshi Arakawa and
Akira Watahiki and
Piero Carninci and
Yoshihide Hayashizaki and
Bernhard Korn and
Jiri Plachy},
title = {The {DT40} web site: sampling and connecting the genes of a {B} cell
line},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {230--231},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.230},
doi = {10.1093/NAR/30.1.230},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BuersteddeAWCHKP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/KawagashiraOMMKCHK02,
author = {Nobuyuki Kawagashira and
Yasuhiro Ohtomo and
Kazuo Murakami and
Kenichi Matsubara and
Jun Kawai and
Piero Carninci and
Yoshihide Hayashizaki and
Shoshi Kikuchi},
title = {Wavelet Profiles: Their Application in Oryza sativa {DNA} Sequence
Analysis},
booktitle = {1st {IEEE} Computer Society Bioinformatics Conference, {CSB} 2002,
Stanford, CA, USA, August 14-16, 2002},
pages = {345--346},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/CSB.2002.1039368},
doi = {10.1109/CSB.2002.1039368},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/KawagashiraOMMKCHK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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