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ORCIDBibTeX records: Dan He 0001
@article{DBLP:journals/bmcgenomics/HeSFP18,
author = {Dan He and
Subrata Saha and
Richard Finkers and
Laxmi Parida},
title = {Efficient algorithms for polyploid haplotype phasing},
journal = {{BMC} Genom.},
volume = {19},
number = {{S2}},
year = {2018},
url = {https://doi.org/10.1186/s12864-018-4464-9},
doi = {10.1186/S12864-018-4464-9},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/HeSFP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeWPE17,
author = {Dan He and
Zhanyong Wang and
Laxmi Parida and
Eleazar Eskin},
title = {{IPED2:} Inheritance Path Based Pedigree Reconstruction Algorithm
for Complicated Pedigrees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {5},
pages = {1094--1103},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2017.2688439},
doi = {10.1109/TCBB.2017.2688439},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeWPE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HeP17,
author = {Dan He and
Laxmi Parida},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {{MUSE:} {A} Multi-locus Sampling-based Epistasis Algorithm for Quantitative
Genetic Trait Prediction},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {426--437},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/he.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HeP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeKP16,
author = {Dan He and
David Kuhn and
Laxmi Parida},
title = {Novel applications of multitask learning and multiple output regression
to multiple genetic trait prediction},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {37--43},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw249},
doi = {10.1093/BIOINFORMATICS/BTW249},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeKP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeP16,
author = {Dan He and
Laxmi Parida},
title = {Does encoding matter? {A} novel view on the quantitative genetic trait
prediction problem},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-9}},
pages = {272},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1127-1},
doi = {10.1186/S12859-016-1127-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HeRHP16,
author = {Dan He and
Irina Rish and
David Haws and
Laxmi Parida},
title = {{MINT:} Mutual Information Based Transductive Feature Selection for
Genetic Trait Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {13},
number = {3},
pages = {578--583},
year = {2016},
url = {https://doi.org/10.1109/TCBB.2015.2448071},
doi = {10.1109/TCBB.2015.2448071},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HeRHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeWP15,
author = {Dan He and
Zhanyong Wang and
Laxmi Parida},
title = {Data-driven encoding for quantitative genetic trait prediction},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-1}},
pages = {S10},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s1-s10},
doi = {10.1186/1471-2105-16-S1-S10},
timestamp = {Tue, 06 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HeWP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/ArslanHHW15,
author = {Abdullah N. Arslan and
Dan He and
Yu He and
Xindong Wu},
title = {Pattern matching with wildcards and length constraints using maximum
network flow},
journal = {J. Discrete Algorithms},
volume = {35},
pages = {9--16},
year = {2015},
url = {https://doi.org/10.1016/j.jda.2015.08.003},
doi = {10.1016/J.JDA.2015.08.003},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jda/ArslanHHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeP15,
author = {Dan He and
Laxmi Parida},
title = {{SAME:} a sampling-based multi-locus epistasis algorithm for quantitative
genetic trait prediction},
booktitle = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational
Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September
9-12, 2015},
pages = {286--295},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2808719.2808749},
doi = {10.1145/2808719.2808749},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HeP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HeP15,
author = {Dan He and
Laxmi Parida},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Does encoding matter? {A} novel view on the quantitative genetic trait
prediction problem},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {123--126},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359667},
doi = {10.1109/BIBM.2015.7359667},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HeP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/OgundijoHP15,
author = {Oyetunji E. Ogundijo and
Dan He and
Laxmi Parida},
title = {Performance evaluation of different encoding strategies for quantitative
genetic trait prediction},
booktitle = {5th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2015, Miami, FL, USA, October 15-17,
2015},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICCABS.2015.7344715},
doi = {10.1109/ICCABS.2015.7344715},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/OgundijoHP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/HeWP15,
author = {Dan He and
Zhanyong Wang and
Laxmi Parida},
editor = {Robert W. Harrison and
Yaohang Li and
Ion I. Mandoiu},
title = {{MINED:} An Efficient Mutual Information Based Epistasis Detection
Method to Improve Quantitative Genetic Trait Prediction},
booktitle = {Bioinformatics Research and Applications - 11th International Symposium,
{ISBRA} 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9096},
pages = {108--124},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-19048-8\_10},
doi = {10.1007/978-3-319-19048-8\_10},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/isbra/HeWP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/HeE14,
author = {Dan He and
Eleazar Eskin},
title = {{IPED2X:} {A} robust pedigree reconstruction algorithm for complicated
pedigrees},
journal = {J. Bioinform. Comput. Biol.},
volume = {12},
number = {6},
year = {2014},
url = {https://doi.org/10.1142/S0219720014420074},
doi = {10.1142/S0219720014420074},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/HeE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/HeP14,
author = {Dan He and
Douglas Stott Parker Jr.},
title = {SemInf: {A} Burst-Based Semantic Influence Model for Biomedical Topic
Influence},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {18},
number = {2},
pages = {508--514},
year = {2014},
url = {https://doi.org/10.1109/JBHI.2013.2285875},
doi = {10.1109/JBHI.2013.2285875},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/HeP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeWPE14,
author = {Dan He and
Zhanyong Wang and
Laxmi Parida and
Eleazar Eskin},
editor = {Pierre Baldi and
Wei Wang},
title = {{IPED2:} inheritance path based pedigree reconstruction algorithm
for complicated pedigrees},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {202--210},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649438},
doi = {10.1145/2649387.2649438},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HeWPE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sdm/HeRP14,
author = {Dan He and
Irina Rish and
Laxmi Parida},
editor = {Mohammed Javeed Zaki and
Zoran Obradovic and
Pang{-}Ning Tan and
Arindam Banerjee and
Chandrika Kamath and
Srinivasan Parthasarathy},
title = {Transductive {HSIC} Lasso},
booktitle = {Proceedings of the 2014 {SIAM} International Conference on Data Mining,
Philadelphia, Pennsylvania, USA, April 24-26, 2014},
pages = {154--162},
publisher = {{SIAM}},
year = {2014},
url = {https://doi.org/10.1137/1.9781611973440.18},
doi = {10.1137/1.9781611973440.18},
timestamp = {Fri, 06 Oct 2023 11:45:43 +0200},
biburl = {https://dblp.org/rec/conf/sdm/HeRP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HeWPE14,
author = {Dan He and
Zhanyong Wang and
Laxmi Parida and
Eleazar Eskin},
title = {{IPED2:} Inheritance Path based Pedigree Reconstruction Algorithm
for Complicated Pedigrees},
journal = {CoRR},
volume = {abs/1408.5530},
year = {2014},
url = {http://arxiv.org/abs/1408.5530},
eprinttype = {arXiv},
eprint = {1408.5530},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HeWPE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHWHPE13,
author = {Wen{-}Yun Yang and
Farhad Hormozdiari and
Zhanyong Wang and
Dan He and
Bogdan Pasaniuc and
Eleazar Eskin},
title = {Leveraging reads that span multiple single nucleotide polymorphisms
for haplotype inference from sequencing data},
journal = {Bioinform.},
volume = {29},
number = {18},
pages = {2245--2252},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt386},
doi = {10.1093/BIOINFORMATICS/BTT386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangHWHPE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeHE13,
author = {Dan He and
Buhm Han and
Eleazar Eskin},
title = {Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation
Using Sequencing Data},
journal = {J. Comput. Biol.},
volume = {20},
number = {2},
pages = {80--92},
year = {2013},
url = {https://doi.org/10.1089/cmb.2012.0091},
doi = {10.1089/CMB.2012.0091},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HeHE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeWHPE13,
author = {Dan He and
Zhanyong Wang and
Buhm Han and
Laxmi Parida and
Eleazar Eskin},
title = {{IPED:} Inheritance Path-based Pedigree Reconstruction Algorithm Using
Genotype Data},
journal = {J. Comput. Biol.},
volume = {20},
number = {10},
pages = {780--791},
year = {2013},
url = {https://doi.org/10.1089/cmb.2013.0080},
doi = {10.1089/CMB.2013.0080},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HeWHPE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HeE13,
author = {Dan He and
Eleazar Eskin},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {{IPEDX:} An exact algorithm for pedigree reconstruction using genotype
data},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {517--520},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732549},
doi = {10.1109/BIBM.2013.6732549},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HeE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iri/HeP13,
author = {Dan He and
Douglas Stott Parker Jr.},
title = {Optimized retrieval algorithms for personalized content aggregation},
booktitle = {{IEEE} 14th International Conference on Information Reuse {\&}
Integration, {IRI} 2013, San Francisco, CA, USA, August 14-16, 2013},
pages = {270--277},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/IRI.2013.6642482},
doi = {10.1109/IRI.2013.6642482},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iri/HeP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeWHPE13,
author = {Dan He and
Zhanyong Wang and
Buhm Han and
Laxmi Parida and
Eleazar Eskin},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {{IPED:} Inheritance Path Based Pedigree Reconstruction Algorithm Using
Genotype Data},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {75--87},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_7},
doi = {10.1007/978-3-642-37195-0\_7},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeWHPE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sdm/HeP13,
author = {Dan He and
Douglas Stott Parker Jr.},
title = {SemInf: {A} Burst-based Semantic Influence Model for Biomedical Topic
Influence},
booktitle = {Proceedings of the 13th {SIAM} International Conference on Data Mining,
May 2-4, 2013. Austin, Texas, {USA}},
pages = {548--559},
publisher = {{SIAM}},
year = {2013},
url = {https://doi.org/10.1137/1.9781611972832.61},
doi = {10.1137/1.9781611972832.61},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sdm/HeP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HeRHTKP13,
author = {Dan He and
Irina Rish and
David Haws and
Simon Teyssedre and
Zivan Karaman and
Laxmi Parida},
title = {{MINT:} Mutual Information based Transductive Feature Selection for
Genetic Trait Prediction},
journal = {CoRR},
volume = {abs/1310.1659},
year = {2013},
url = {http://arxiv.org/abs/1310.1659},
eprinttype = {arXiv},
eprint = {1310.1659},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HeRHTKP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/He12a,
author = {Dan He},
title = {Efficient Algorithms for Human Genetic Variation Detection using High-throughput
Sequencing Techniques},
school = {University of California, Los Angeles, {USA}},
year = {2012},
url = {http://www.escholarship.org/uc/item/73s9p1df},
timestamp = {Tue, 27 Mar 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/basesearch/He12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeHE12,
author = {Dan He and
Buhm Han and
Eleazar Eskin},
editor = {Benny Chor},
title = {Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation
Using Sequencing Data},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {64--78},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_8},
doi = {10.1007/978-3-642-29627-7\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeHE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeHFE11,
author = {Dan He and
Farhad Hormozdiari and
Nicholas A. Furlotte and
Eleazar Eskin},
title = {Efficient algorithms for tandem copy number variation reconstruction
in repeat-rich regions},
journal = {Bioinform.},
volume = {27},
number = {11},
pages = {1513--1520},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr169},
doi = {10.1093/BIOINFORMATICS/BTR169},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeHFE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeZPEH11,
author = {Dan He and
Noah Zaitlen and
Bogdan Pasaniuc and
Eleazar Eskin and
Eran Halperin},
title = {Genotyping common and rare variation using overlapping pool sequencing},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S2},
doi = {10.1186/1471-2105-12-S6-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeZPEH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ci/HeZW11,
author = {Dan He and
Xingquan Zhu and
Xindong Wu},
title = {Mining Approximate Repeating Patterns from Sequence Data with Gap
Constraints},
journal = {Comput. Intell.},
volume = {27},
number = {3},
pages = {336--362},
year = {2011},
url = {https://doi.org/10.1111/j.1467-8640.2011.00383.x},
doi = {10.1111/J.1467-8640.2011.00383.X},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ci/HeZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dss/ZhuLWHZ11,
author = {Xingquan Zhu and
Bin Li and
Xindong Wu and
Dan He and
Chengqi Zhang},
title = {{CLAP:} Collaborative pattern mining for distributed information systems},
journal = {Decis. Support Syst.},
volume = {52},
number = {1},
pages = {40--51},
year = {2011},
url = {https://doi.org/10.1016/j.dss.2011.05.002},
doi = {10.1016/J.DSS.2011.05.002},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dss/ZhuLWHZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeKEHGH11,
author = {Dan He and
Pratima Kunwar and
Eleazar Eskin and
Helen Horton and
Peter B. Gilbert and
Tomer Hertz},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Using {HLA} binding prediction algorithms for epitope mapping in {HIV}
vaccine clinical trials},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {594--601},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147907},
doi = {10.1145/2147805.2147907},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/HeKEHGH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/HeZP11,
author = {Dan He and
Xingquan Zhu and
Douglas Stott Parker Jr.},
editor = {Diane J. Cook and
Jian Pei and
Wei Wang and
Osmar R. Za{\"{\i}}ane and
Xindong Wu},
title = {How Does Research Evolve? Pattern Mining for Research Meme Cycles},
booktitle = {11th {IEEE} International Conference on Data Mining, {ICDM} 2011,
Vancouver, BC, Canada, December 11-14, 2011},
pages = {1068--1073},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICDM.2011.76},
doi = {10.1109/ICDM.2011.76},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/HeZP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/HeP11,
author = {Dan He and
Douglas Stott Parker Jr.},
editor = {Joshua Zhexue Huang and
Longbing Cao and
Jaideep Srivastava},
title = {Learning the Funding Momentum of Research Projects},
booktitle = {Advances in Knowledge Discovery and Data Mining - 15th Pacific-Asia
Conference, {PAKDD} 2011, Shenzhen, China, May 24-27, 2011, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6635},
pages = {532--543},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20847-8\_44},
doi = {10.1007/978-3-642-20847-8\_44},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/HeP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/He11,
author = {Dan He},
editor = {Dimitrios Gunopulos and
Thomas Hofmann and
Donato Malerba and
Michalis Vazirgiannis},
title = {Mining Research Topic-Related Influence between Academia and Industry},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2011, Athens, Greece, September 5-9, 2011, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6912},
pages = {17--31},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23783-6\_2},
doi = {10.1007/978-3-642-23783-6\_2},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/He11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeCPDE10,
author = {Dan He and
Arthur Choi and
Knot Pipatsrisawat and
Adnan Darwiche and
Eleazar Eskin},
title = {Optimal algorithms for haplotype assembly from whole-genome sequence
data},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {183--190},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq215},
doi = {10.1093/BIOINFORMATICS/BTQ215},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeCPDE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeFE10,
author = {Dan He and
Nicholas A. Furlotte and
Eleazar Eskin},
title = {Detection and reconstruction of tandemly organized de novo copy number
variations},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-11}},
pages = {S12},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S11-S12},
doi = {10.1186/1471-2105-11-S11-S12},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeFE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/HeP10,
author = {Dan He and
Douglas Stott Parker Jr.},
editor = {Bharat Rao and
Balaji Krishnapuram and
Andrew Tomkins and
Qiang Yang},
title = {Topic dynamics: an alternative model of bursts in streams of topics},
booktitle = {Proceedings of the 16th {ACM} {SIGKDD} International Conference on
Knowledge Discovery and Data Mining, Washington, DC, USA, July 25-28,
2010},
pages = {443--452},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1835804.1835862},
doi = {10.1145/1835804.1835862},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/HeP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/HeWZ10,
author = {Dan He and
Xindong Wu and
Xingquan Zhu},
editor = {Mohammed Javeed Zaki and
Jeffrey Xu Yu and
Balaraman Ravindran and
Vikram Pudi},
title = {Rule Synthesizing from Multiple Related Databases},
booktitle = {Advances in Knowledge Discovery and Data Mining, 14th Pacific-Asia
Conference, {PAKDD} 2010, Hyderabad, India, June 21-24, 2010. Proceedings.
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6119},
pages = {201--213},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13672-6\_20},
doi = {10.1007/978-3-642-13672-6\_20},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/HeWZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HeE10,
author = {Dan He and
Eleazar Eskin},
editor = {Vincent Moulton and
Mona Singh},
title = {Effective Algorithms for Fusion Gene Detection},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {312--324},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_26},
doi = {10.1007/978-3-642-15294-8\_26},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/HeE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/HeZW09,
author = {Dan He and
Xingquan Zhu and
Xindong Wu},
title = {Approximate Repeating Pattern Mining with Gap Requirements},
booktitle = {{ICTAI} 2009, 21st {IEEE} International Conference on Tools with Artificial
Intelligence, Newark, New Jersey, USA, 2-4 November 2009},
pages = {17--24},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICTAI.2009.8},
doi = {10.1109/ICTAI.2009.8},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ictai/HeZW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/HeZW09a,
author = {Dan He and
Xingquan Zhu and
Xindong Wu},
title = {Error Detection and Uncertainty Modeling for Imprecise Data},
booktitle = {{ICTAI} 2009, 21st {IEEE} International Conference on Tools with Artificial
Intelligence, Newark, New Jersey, USA, 2-4 November 2009},
pages = {792--795},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICTAI.2009.9},
doi = {10.1109/ICTAI.2009.9},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ictai/HeZW09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/ZhuZWHZS08,
author = {Xingquan Zhu and
Peng Zhang and
Xindong Wu and
Dan He and
Chengqi Zhang and
Yong Shi},
title = {Cleansing Noisy Data Streams},
booktitle = {Proceedings of the 8th {IEEE} International Conference on Data Mining
{(ICDM} 2008), December 15-19, 2008, Pisa, Italy},
pages = {1139--1144},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/ICDM.2008.45},
doi = {10.1109/ICDM.2008.45},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/ZhuZWHZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/HeAHW07,
author = {Dan He and
Abdullah N. Arslan and
Yu He and
Xindong Wu},
title = {Iterative Refinement of Repeat Sequence Specification Using Constrained
Pattern Matching},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {1199--1203},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375715},
doi = {10.1109/BIBE.2007.4375715},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/HeAHW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HeWZ07,
author = {Dan He and
Xindong Wu and
Xingquan Zhu},
title = {{SAIL-APPROX:} An Efficient On-Line Algorithm for Approximate Pattern
Matching with Wildcards and Length Constraints},
booktitle = {Proceedings of the {IEEE} International Conference on Bioinformatics
and Biomedicine, {BIBM} 2007, Silicon Valley, CA, USA, November 2-4,
2007},
pages = {151--158},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBM.2007.64},
doi = {10.1109/BIBM.2007.64},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HeWZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iri/HeW06,
author = {Dan He and
Xindong Wu},
title = {Ontology-based feature weighting for biomedical literature classification},
booktitle = {Proceedings of the 2006 {IEEE} International Conference on Information
Reuse and Integration, {IRI} - 2006: Heuristic Systems Engineering,
September 16-18, 2006, Waikoloa, Hawaii, {USA}},
pages = {280--285},
publisher = {{IEEE} Systems, Man, and Cybernetics Society},
year = {2006},
url = {https://doi.org/10.1109/IRI.2006.252426},
doi = {10.1109/IRI.2006.252426},
timestamp = {Thu, 16 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iri/HeW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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