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ORCIDBibTeX records: Ralf Herwig
@article{DBLP:journals/nar/KamburovH22,
author = {Atanas Kamburov and
Ralf Herwig},
title = {ConsensusPathDB 2022: molecular interactions update as a resource
for network biology},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {587--595},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1128},
doi = {10.1093/NAR/GKAB1128},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbbb/NguyenLHKJ22,
author = {Nhan Nguyen and
Matthias Lienhard and
Ralf Herwig and
Jos Kleinjans and
Danyel Jennen},
title = {A bioinformatics workflow to detect genes with {DNA} methylation alterations:
a case study of analyzing MeDIP-seq data in cardiac microtissue exposed
to epirubicin},
booktitle = {{ICBBB} 2022: 12th International Conference on Bioscience, Biochemistry
and Bioinformatics, Tokyo, Japan, January 7 - 10, 2022},
pages = {63--69},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3510427.3510437},
doi = {10.1145/3510427.3510437},
timestamp = {Wed, 24 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbbb/NguyenLHKJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HardtBRKHKH16,
author = {Christopher Hardt and
Moritz Emanuel Beber and
Axel Rasche and
Atanas Kamburov and
Dennie G. A. J. Hebels and
Jos C. S. Kleinjans and
Ralf Herwig},
title = {ToxDB: pathway-level interpretation of drug-treatment data},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw052},
doi = {10.1093/DATABASE/BAW052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/HardtBRKHKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HendrickxACCEEG15,
author = {Diana M. Hendrickx and
Hugo J. W. L. Aerts and
Florian Caiment and
Dominic Clark and
Timothy M. D. Ebbels and
Chris T. A. Evelo and
Hans Gmuender and
Dennie G. A. J. Hebels and
Ralf Herwig and
J{\"{u}}rgen Hescheler and
Danyel G. J. Jennen and
Marlon J. A. Jetten and
Stathis Kanterakis and
Hector C. Keun and
Vera Matser and
John P. Overington and
Ekaterina Pilicheva and
Ugis Sarkans and
Marcelo P. Segura{-}Lepe and
Isaia Sotiriadou and
Timo Wittenberger and
Clemens Wittwehr and
Antonella Zanzi and
Jos C. S. Kleinjans},
title = {diXa: a data infrastructure for chemical safety assessment},
journal = {Bioinform.},
volume = {31},
number = {9},
pages = {1505--1507},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu827},
doi = {10.1093/BIOINFORMATICS/BTU827},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HendrickxACCEEG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LienhardGMHC14,
author = {Matthias Lienhard and
Christina Grimm and
Markus Morkel and
Ralf Herwig and
Lukas Chavez},
title = {{MEDIPS:} genome-wide differential coverage analysis of sequencing
data derived from {DNA} enrichment experiments},
journal = {Bioinform.},
volume = {30},
number = {2},
pages = {284--286},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt650},
doi = {10.1093/BIOINFORMATICS/BTT650},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LienhardGMHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KamburovSLH13,
author = {Atanas Kamburov and
Ulrich Stelzl and
Hans Lehrach and
Ralf Herwig},
title = {The ConsensusPathDB interaction database: 2013 update},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {793--800},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1055},
doi = {10.1093/NAR/GKS1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovSLH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DreherKHKYSLLH12,
author = {Felix Dreher and
Thomas Kreitler and
Christopher Hardt and
Atanas Kamburov and
Reha Yildirimman and
Karl Schellander and
Hans Lehrach and
Bodo M. H. Lange and
Ralf Herwig},
title = {{DIPSBC} - data integration platform for systems biology collaborations},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {85},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-85},
doi = {10.1186/1471-2105-13-85},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DreherKHKYSLLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KamburovGHS12,
author = {Atanas Kamburov and
Arndt Grossmann and
Ralf Herwig and
Ulrich Stelzl},
title = {Cluster-based assessment of protein-protein interaction confidence},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {262},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-262},
doi = {10.1186/1471-2105-13-262},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KamburovGHS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KamburovSH12,
author = {Atanas Kamburov and
Ulrich Stelzl and
Ralf Herwig},
title = {IntScore: a web tool for confidence scoring of biological interactions},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {140--146},
year = {2012},
url = {https://doi.org/10.1093/nar/gks492},
doi = {10.1093/NAR/GKS492},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamburovCEHK11,
author = {Atanas Kamburov and
Rachel Cavill and
Timothy M. D. Ebbels and
Ralf Herwig and
Hector C. Keun},
title = {Integrated pathway-level analysis of transcriptomics and metabolomics
data with IMPaLA},
journal = {Bioinform.},
volume = {27},
number = {20},
pages = {2917--2918},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr499},
doi = {10.1093/BIOINFORMATICS/BTR499},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamburovCEHK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KamburovPGWLH11,
author = {Atanas Kamburov and
Konstantin Pentchev and
Hanna Galicka and
Christoph K. Wierling and
Hans Lehrach and
Ralf Herwig},
title = {ConsensusPathDB: toward a more complete picture of cell biology},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {712--717},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1156},
doi = {10.1093/NAR/GKQ1156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovPGWLH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CavillKEABHEK11,
author = {Rachel Cavill and
Atanas Kamburov and
James K. Ellis and
Toby J. Athersuch and
Marcus S. C. Blagrove and
Ralf Herwig and
Timothy M. D. Ebbels and
Hector C. Keun},
title = {Consensus-Phenotype Integration of Transcriptomic and Metabolomic
Data Implies a Role for Metabolism in the Chemosensitivity of Tumour
Cells},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {3},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1001113},
doi = {10.1371/JOURNAL.PCBI.1001113},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CavillKEABHEK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RascheH10,
author = {Axel Rasche and
Ralf Herwig},
title = {{ARH:} predicting splice variants from genome-wide data with modified
entropy},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {84--90},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp626},
doi = {10.1093/BIOINFORMATICS/BTP626},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RascheH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PentchevOHIK10,
author = {Konstantin Pentchev and
Keiichiro Ono and
Ralf Herwig and
Trey Ideker and
Atanas Kamburov},
title = {Evidence mining and novelty assessment of protein-protein interactions
with the ConsensusPathDB plugin for Cytoscape},
journal = {Bioinform.},
volume = {26},
number = {21},
pages = {2796--2797},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq522},
doi = {10.1093/BIOINFORMATICS/BTQ522},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PentchevOHIK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HacheWLH09,
author = {Hendrik Hache and
Christoph K. Wierling and
Hans Lehrach and
Ralf Herwig},
title = {GeNGe: systematic generation of gene regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1205--1207},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp115},
doi = {10.1093/BIOINFORMATICS/BTP115},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HacheWLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/HacheLH09,
author = {Hendrik Hache and
Hans Lehrach and
Ralf Herwig},
title = {Reverse Engineering of Gene Regulatory Networks: {A} Comparative Study},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1155/2009/617281},
doi = {10.1155/2009/617281},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/HacheLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KamburovWLH09,
author = {Atanas Kamburov and
Christoph K. Wierling and
Hans Lehrach and
Ralf Herwig},
title = {ConsensusPathDB - a database for integrating human functional interaction
networks},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {623--628},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn698},
doi = {10.1093/NAR/GKN698},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KamburovWLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RascheH07,
author = {Axel Rasche and
Ralf Herwig},
title = {T2DM-GeneMiner a web resource for meta-analysis and marker identification
for type 2 diabetes mellitus},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-8}},
year = {2007},
url = {http://www.biomedcentral.com/1471-2105/8/S8/P3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RascheH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WolskiLMHGGSLR05,
author = {Witold E. Wolski and
Maciej Lalowski and
Peter Martus and
Ralf Herwig and
Patrick Giavalisco and
Johan Gobom and
Albert Sickmann and
Hans Lehrach and
Knut Reinert},
title = {Transformation and other factors of the peptide mass spectrometry
pairwise peak-list comparison process},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {285},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-285},
doi = {10.1186/1471-2105-6-285},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WolskiLMHGGSLR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/DieterichHV03,
author = {Christoph Dieterich and
Ralf Herwig and
Martin Vingron},
title = {Exploring potential target genes of signaling pathways by predicting
conserved transcription factor binding sites},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2003), September 27-30, 2003, Paris, France},
pages = {50--56},
year = {2003},
timestamp = {Mon, 27 Oct 2003 15:56:17 +0100},
biburl = {https://dblp.org/rec/conf/eccb/DieterichHV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WierlingSESACLH02,
author = {Christoph K. Wierling and
Matthias Steinfath and
Thorsten Elge and
Steffen Schulze{-}Kremer and
Pia Aanstad and
Matthew Clark and
Hans Lehrach and
Ralf Herwig},
title = {Simulation of {DNA} array hybridization experiments and evaluation
of critical parameters during subsequent image and data analysis},
journal = {{BMC} Bioinform.},
volume = {3},
pages = {29},
year = {2002},
url = {https://doi.org/10.1186/1471-2105-3-29},
doi = {10.1186/1471-2105-3-29},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WierlingSESACLH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HerwigSSOSMLR00,
author = {Ralf Herwig and
Armin Otto Schmitt and
Matthias Steinfath and
John O'Brien and
Henrik Seidel and
Sebastian Meier{-}Ewert and
Hans Lehrach and
Uwe Radelof},
title = {Information theoretical probe selection for hybridisation experiments},
journal = {Bioinform.},
volume = {16},
number = {10},
pages = {890--898},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.10.890},
doi = {10.1093/BIOINFORMATICS/16.10.890},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HerwigSSOSMLR00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HennigHCAMOBRPPL00,
author = {Steffen Hennig and
Ralf Herwig and
Matthew Clark and
Pia Aanstad and
A. Musa and
John O'Brien and
C. Bull and
Uwe Radelof and
Georgia Panopoulou and
Albert J. Poustka and
Hans Lehrach},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A data-analysis pipeline for large-scale gene expression analysis},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {165--173},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332362},
doi = {10.1145/332306.332362},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HennigHCAMOBRPPL00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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