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ORCIDBibTeX records: Susan P. Holmes
@article{DBLP:journals/titb/SymulH22,
author = {Laura Symul and
Susan P. Holmes},
title = {Labeling Self-Tracked Menstrual Health Records With Hidden Semi-Markov
Models},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {3},
pages = {1297--1308},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2021.3110716},
doi = {10.1109/JBHI.2021.3110716},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/SymulH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeilerFKSGVBH21,
author = {Christof Seiler and
Anne{-}Maud Ferreira and
Lisa M. Kronstad and
Laura J. Simpson and
Mathieu Le Gars and
Elena Vendrame and
Catherine A. Blish and
Susan P. Holmes},
title = {CytoGLMM: conditional differential analysis for flow and mass cytometry
experiments},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {137},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04067-x},
doi = {10.1186/S12859-021-04067-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SeilerFKSGVBH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jap/FangGHHPRT21,
author = {Xiao Fang and
Han L. Gan and
Susan P. Holmes and
Haiyan Huang and
Erol Pek{\"{o}}z and
Adrian R{\"{o}}llin and
Wenpin Tang},
title = {Arcsine laws for random walks generated from random permutations with
applications to genomics},
journal = {J. Appl. Probab.},
volume = {58},
number = {4},
pages = {851--867},
year = {2021},
url = {https://doi.org/10.1017/jpr.2021.14},
doi = {10.1017/JPR.2021.14},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jap/FangGHHPRT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-egc/Holmes21,
author = {Susan P. Holmes},
editor = {J{\'{e}}r{\^{o}}me Az{\'{e}} and
Vincent Lemaire},
title = {Integrating trees and networks into reproducible data analytic workflows},
booktitle = {Extraction et Gestion des Connaissances, {EGC} 2021, 25-29 Janvier
2021, Montpellier, France},
series = {{RNTI}},
volume = {{E-37}},
pages = {3--4},
publisher = {{\'{E}}ditions {RNTI}},
year = {2021},
url = {http://editions-rnti.fr/?inprocid=1002631},
timestamp = {Sat, 19 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/f-egc/Holmes21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/MiolanePLH20,
author = {Nina Miolane and
Fr{\'{e}}d{\'{e}}ric Poitevin and
Yee{-}Ting Li and
Susan P. Holmes},
title = {Estimation of Orientation and Camera Parameters from Cryo-Electron
Microscopy Images with Variational Autoencoders and Generative Adversarial
Networks},
booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
{CVPR} Workshops 2020, Seattle, WA, USA, June 14-19, 2020},
pages = {4174--4183},
publisher = {Computer Vision Foundation / {IEEE}},
year = {2020},
url = {https://openaccess.thecvf.com/content\_CVPRW\_2020/html/w57/Miolane\_Estimation\_of\_Orientation\_and\_Camera\_Parameters\_From\_Cryo-Electron\_Microscopy\_Images\_CVPRW\_2020\_paper.html},
doi = {10.1109/CVPRW50498.2020.00493},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/MiolanePLH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/MiolaneH20,
author = {Nina Miolane and
Susan P. Holmes},
title = {Learning Weighted Submanifolds With Variational Autoencoders and Riemannian
Variational Autoencoders},
booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2020, Seattle, WA, USA, June 13-19, 2020},
pages = {14491--14499},
publisher = {Computer Vision Foundation / {IEEE}},
year = {2020},
url = {https://openaccess.thecvf.com/content\_CVPR\_2020/html/Miolane\_Learning\_Weighted\_Submanifolds\_With\_Variational\_Autoencoders\_and\_Riemannian\_Variational\_Autoencoders\_CVPR\_2020\_paper.html},
doi = {10.1109/CVPR42600.2020.01451},
timestamp = {Tue, 31 Aug 2021 14:00:04 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/MiolaneH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/scipy/MiolaneGZSHBBMHTHPKCGCKDHP20,
author = {Nina Miolane and
Nicolas Guigui and
Hadi Zaatiti and
Christian Shewmake and
Hatem Hajri and
Daniel Brooks and
Alice Le Brigant and
Johan Mathe and
Benjamin Hou and
Yann Thanwerdas and
Stefan Heyder and
Olivier Peltre and
Niklas Koep and
Yann Cabanes and
Thomas Gerald and
Paul Chauchat and
Bernhard Kainz and
Claire Donnat and
Susan P. Holmes and
Xavier Pennec},
editor = {Meghann Agarwal and
Chris Calloway and
Dillon Niederhut and
David Shupe},
title = {Introduction to Geometric Learning in Python with Geomstats},
booktitle = {Proceedings of the 19th Python in Science Conference 2020 (SciPy 2020),
Virtual Conference, July 6 - July 12, 2020},
pages = {48--57},
publisher = {scipy.org},
year = {2020},
url = {https://doi.org/10.25080/Majora-342d178e-007},
doi = {10.25080/MAJORA-342D178E-007},
timestamp = {Sun, 08 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/scipy/MiolaneGZSHBBMHTHPKCGCKDHP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-04667,
author = {Nina Miolane and
Alice Le Brigant and
Johan Mathe and
Benjamin Hou and
Nicolas Guigui and
Yann Thanwerdas and
Stefan Heyder and
Olivier Peltre and
Niklas Koep and
Hadi Zaatiti and
Hatem Hajri and
Yann Cabanes and
Thomas Gerald and
Paul Chauchat and
Christian Shewmake and
Bernhard Kainz and
Claire Donnat and
Susan P. Holmes and
Xavier Pennec},
title = {Geomstats: {A} Python Package for Riemannian Geometry in Machine Learning},
journal = {CoRR},
volume = {abs/2004.04667},
year = {2020},
url = {https://arxiv.org/abs/2004.04667},
eprinttype = {arXiv},
eprint = {2004.04667},
timestamp = {Tue, 14 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-04667.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NguyenH19,
author = {Lan H. Nguyen and
Susan P. Holmes},
title = {Ten quick tips for effective dimensionality reduction},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {6},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1006907},
doi = {10.1371/JOURNAL.PCBI.1006907},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NguyenH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acssc/DonnatH19,
author = {Claire Donnat and
Susan P. Holmes},
editor = {Michael B. Matthews},
title = {Convex Hierarchical Clustering for Graph-Structured Data},
booktitle = {53rd Asilomar Conference on Signals, Systems, and Computers, {ACSCC}
2019, Pacific Grove, CA, USA, November 3-6, 2019},
pages = {1999--2006},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/IEEECONF44664.2019.9048653},
doi = {10.1109/IEEECONF44664.2019.9048653},
timestamp = {Wed, 04 Nov 2020 13:32:57 +0100},
biburl = {https://dblp.org/rec/conf/acssc/DonnatH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-03417,
author = {Claire Donnat and
Susan P. Holmes},
title = {Convex Hierarchical Clustering for Graph-Structured Data},
journal = {CoRR},
volume = {abs/1911.03417},
year = {2019},
url = {http://arxiv.org/abs/1911.03417},
eprinttype = {arXiv},
eprint = {1911.03417},
timestamp = {Mon, 11 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-03417.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-08121,
author = {Nina Miolane and
Fr{\'{e}}d{\'{e}}ric Poitevin and
Yee{-}Ting Li and
Susan P. Holmes},
title = {Estimation of Orientation and Camera Parameters from Cryo-Electron
Microscopy Images with Variational Autoencoders and Generative Adversarial
Networks},
journal = {CoRR},
volume = {abs/1911.08121},
year = {2019},
url = {http://arxiv.org/abs/1911.08121},
eprinttype = {arXiv},
eprint = {1911.08121},
timestamp = {Wed, 04 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-08121.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-08147,
author = {Nina Miolane and
Susan P. Holmes},
title = {Learning Weighted Submanifolds with Variational Autoencoders and Riemannian
Variational Autoencoders},
journal = {CoRR},
volume = {abs/1911.08147},
year = {2019},
url = {http://arxiv.org/abs/1911.08147},
eprinttype = {arXiv},
eprint = {1911.08147},
timestamp = {Wed, 04 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-08147.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/SeilerGHCHHR18,
author = {Christof Seiler and
Tamar Green and
David Hong and
Lindsay Chromik and
Lynne Huffman and
Susan P. Holmes and
Allan L. Reiss},
title = {Multi-Table Differential Correlation Analysis of Neuroanatomical and
Cognitive Interactions in Turner Syndrome},
journal = {Neuroinformatics},
volume = {16},
number = {1},
pages = {81--93},
year = {2018},
url = {https://doi.org/10.1007/s12021-017-9351-z},
doi = {10.1007/S12021-017-9351-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/SeilerGHCHHR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siaga/MiolaneHP18,
author = {Nina Miolane and
Susan P. Holmes and
Xavier Pennec},
title = {Topologically Constrained Template Estimation via Morse-Smale Complexes
Controls Its Statistical Consistency},
journal = {{SIAM} J. Appl. Algebra Geom.},
volume = {2},
number = {2},
pages = {348--375},
year = {2018},
url = {https://doi.org/10.1137/17M1129222},
doi = {10.1137/17M1129222},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/siaga/MiolaneHP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-07351,
author = {Claire Donnat and
Susan P. Holmes},
title = {Tracking Network Dynamics: a review of distances and similarity metrics},
journal = {CoRR},
volume = {abs/1801.07351},
year = {2018},
url = {http://arxiv.org/abs/1801.07351},
eprinttype = {arXiv},
eprint = {1801.07351},
timestamp = {Tue, 23 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-07351.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NguyenH17,
author = {Lan H. Nguyen and
Susan P. Holmes},
title = {Bayesian Unidimensional Scaling for visualizing uncertainty in high
dimensional datasets with latent ordering of observations},
journal = {{BMC} Bioinform.},
volume = {18},
number = {{S-10}},
pages = {65--79},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1790-x},
doi = {10.1186/S12859-017-1790-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NguyenH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FukuyamaRSJDRH17,
author = {Julia Fukuyama and
Laurie Rumker and
Kris Sankaran and
Pratheepa Jeganathan and
Les Dethlefsen and
David A. Relman and
Susan P. Holmes},
title = {Multidomain analyses of a longitudinal human microbiome intestinal
cleanout perturbation experiment},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {8},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005706},
doi = {10.1371/JOURNAL.PCBI.1005706},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FukuyamaRSJDRH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamis/MiolaneHP17,
author = {Nina Miolane and
Susan P. Holmes and
Xavier Pennec},
title = {Template Shape Estimation: Correcting an Asymptotic Bias},
journal = {{SIAM} J. Imaging Sci.},
volume = {10},
number = {2},
pages = {808--844},
year = {2017},
url = {https://doi.org/10.1137/16M1084493},
doi = {10.1137/16M1084493},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/siamis/MiolaneHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/CallahanPRFH16,
author = {Benjamin J. Callahan and
Diana Proctor and
David A. Relman and
Julia Fukuyama and
Susan P. Holmes},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Reproducible Research Workflow in {R} for the Analysis of Personalized
Human Microbiome Data},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {183--194},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/callahan.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/CallahanPRFH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MiolaneHP16,
author = {Nina Miolane and
Susan P. Holmes and
Xavier Pennec},
title = {Template shape estimation: correcting an asymptotic bias},
journal = {CoRR},
volume = {abs/1610.01502},
year = {2016},
url = {http://arxiv.org/abs/1610.01502},
eprinttype = {arXiv},
eprint = {1610.01502},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/MiolaneHP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McMurdieH15,
author = {Paul J. McMurdie and
Susan P. Holmes},
title = {Shiny-phyloseq: Web application for interactive microbiome analysis
with provenance tracking},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {282--283},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu616},
doi = {10.1093/BIOINFORMATICS/BTU616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McMurdieH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sac/BacalladoDH15,
author = {Sergio Bacallado and
Persi Diaconis and
Susan P. Holmes},
title = {de Finetti Priors using Markov chain Monte Carlo computations},
journal = {Stat. Comput.},
volume = {25},
number = {4},
pages = {797--808},
year = {2015},
url = {https://doi.org/10.1007/s11222-015-9562-9},
doi = {10.1007/S11222-015-9562-9},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sac/BacalladoDH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/McMurdieH14,
author = {Paul J. McMurdie and
Susan P. Holmes},
title = {Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {4},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003531},
doi = {10.1371/JOURNAL.PCBI.1003531},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/McMurdieH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SeilerRH14,
author = {Christof Seiler and
Simon Rubinstein{-}Salzedo and
Susan P. Holmes},
editor = {Zoubin Ghahramani and
Max Welling and
Corinna Cortes and
Neil D. Lawrence and
Kilian Q. Weinberger},
title = {Positive Curvature and Hamiltonian Monte Carlo},
booktitle = {Advances in Neural Information Processing Systems 27: Annual Conference
on Neural Information Processing Systems 2014, December 8-13 2014,
Montreal, Quebec, Canada},
pages = {586--594},
year = {2014},
url = {https://proceedings.neurips.cc/paper/2014/hash/beed13602b9b0e6ecb5b568ff5058f07-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SeilerRH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gsi/SeilerPH13,
author = {Christof Seiler and
Xavier Pennec and
Susan P. Holmes},
editor = {Frank Nielsen and
Fr{\'{e}}d{\'{e}}ric Barbaresco},
title = {Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics},
booktitle = {Geometric Science of Information - First International Conference,
{GSI} 2013, Paris, France, August 28-30, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8085},
pages = {120--127},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40020-9\_12},
doi = {10.1007/978-3-642-40020-9\_12},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gsi/SeilerPH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RosenCFH12,
author = {Michael J. Rosen and
Benjamin J. Callahan and
Daniel S. Fisher and
Susan P. Holmes},
title = {Denoising PCR-amplified metagenome data},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {283},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-283},
doi = {10.1186/1471-2105-13-283},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RosenCFH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/FukuyamaMDRH12,
author = {Julia Fukuyama and
Paul J. McMurdie and
Les Dethlefsen and
David A. Relman and
Susan P. Holmes},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Comparisons of Distance Methods for Combining Covariates and Abundances
in Microbiome Studies},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {213--224},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/fukuyama.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/FukuyamaMDRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/McMurdieH12,
author = {Paul J. McMurdie and
Susan P. Holmes},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {phyloseq: {A} Bioconductor Package for Handling and Analysis of High-Throughput
Phylogenetic Sequence Data},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {235--246},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/mcmurdie.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/McMurdieH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/anor/GuetzH11,
author = {Adam Guetz and
Susan P. Holmes},
title = {Adaptive importance sampling for network growth models},
journal = {Ann. Oper. Res.},
volume = {189},
number = {1},
pages = {187--203},
year = {2011},
url = {https://doi.org/10.1007/s10479-010-0685-2},
doi = {10.1007/S10479-010-0685-2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/anor/GuetzH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DohertyNKRHSR11,
author = {Kathleen M. Doherty and
Priyanka Nakka and
Bracken M. King and
Soo{-}Yon Rhee and
Susan P. Holmes and
Robert W. Shafer and
Mala L. Radhakrishnan},
title = {A multifaceted analysis of {HIV-1} protease multidrug resistance phenotypes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {477},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-477},
doi = {10.1186/1471-2105-12-477},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DohertyNKRHSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HolmesATNPS11,
author = {Susan P. Holmes and
Alexander V. Alekseyenko and
Alden Timme and
Tyrrell Nelson and
Pankaj Jay Pasricha and
Alfred Spormann},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Visualization and Statistical Comparisons of Microbial Communities
Using {R} Packages on Phylochip Data},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {142--153},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/holmes.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HolmesATNPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReumanMCLBSHS10,
author = {Elizabeth C. Reuman and
Severine Margeridon{-}Thermet and
Harrison B. Caudill and
Tommy F. Liu and
Katyna Borroto{-}Esoda and
Evguenia S. Svarovskaia and
Susan P. Holmes and
Robert W. Shafer},
title = {A classification model for G-to-A hypermutation in hepatitis {B} virus
ultra-deep pyrosequencing reads},
journal = {Bioinform.},
volume = {26},
number = {23},
pages = {2929--2932},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq570},
doi = {10.1093/BIOINFORMATICS/BTQ570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReumanMCLBSHS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/im/DiaconisHJ08,
author = {Persi Diaconis and
Susan P. Holmes and
Svante Janson},
title = {Threshold Graph Limits and Random Threshold Graphs},
journal = {Internet Math.},
volume = {5},
number = {3},
pages = {267--320},
year = {2008},
url = {https://doi.org/10.1080/15427951.2008.10129166},
doi = {10.1080/15427951.2008.10129166},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/im/DiaconisHJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NacuCLH07,
author = {Serban Nacu and
Rebecca Critchley{-}Thorne and
Peter P. Lee and
Susan P. Holmes},
title = {Gene expression network analysis and applications to immunology},
journal = {Bioinform.},
volume = {23},
number = {7},
pages = {850--858},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm019},
doi = {10.1093/BIOINFORMATICS/BTM019},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NacuCLH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RheeLHS07,
author = {Soo{-}Yon Rhee and
Tommy F. Liu and
Susan P. Holmes and
Robert W. Shafer},
title = {{HIV-1} Subtype {B} Protease and Reverse Transcriptase Amino Acid
Covariation},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {5},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030087},
doi = {10.1371/JOURNAL.PCBI.0030087},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RheeLHS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamrev/DiaconisHM07,
author = {Persi Diaconis and
Susan P. Holmes and
Richard Montgomery},
title = {Dynamical Bias in the Coin Toss},
journal = {{SIAM} Rev.},
volume = {49},
number = {2},
pages = {211--235},
year = {2007},
url = {https://doi.org/10.1137/S0036144504446436},
doi = {10.1137/S0036144504446436},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamrev/DiaconisHM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/07/Holmes07,
author = {Susan P. Holmes},
editor = {Olivier Gascuel},
title = {Statistical approaches to test involving phylogenetics},
booktitle = {Mathematics of Evolution and Phylogeny},
publisher = {Oxford University Press},
year = {2007},
timestamp = {Wed, 06 May 2020 15:31:00 +0200},
biburl = {https://dblp.org/rec/books/ox/07/Holmes07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ior/AbbasH04,
author = {Ali E. Abbas and
Susan P. Holmes},
title = {Bioinformatics and Management Science: Some Common Tools and Techniques},
journal = {Oper. Res.},
volume = {52},
number = {2},
pages = {165--190},
year = {2004},
url = {https://doi.org/10.1287/opre.1030.0095},
doi = {10.1287/OPRE.1030.0095},
timestamp = {Tue, 31 Mar 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ior/AbbasH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aam/BilleraHV02,
author = {Louis J. Billera and
Susan P. Holmes and
Karen Vogtmann},
title = {Erratum to: "Geometry of the Space of Phylogenetic Trees":
[Adv. in Appl. Math. 27 {(2001)} 733-767]},
journal = {Adv. Appl. Math.},
volume = {29},
number = {1},
pages = {136},
year = {2002},
url = {https://doi.org/10.1016/S0196-8858(02)00016-7},
doi = {10.1016/S0196-8858(02)00016-7},
timestamp = {Thu, 28 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/aam/BilleraHV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aam/BilleraHV01,
author = {Louis J. Billera and
Susan P. Holmes and
Karen Vogtmann},
title = {Geometry of the Space of Phylogenetic Trees},
journal = {Adv. Appl. Math.},
volume = {27},
number = {4},
pages = {733--767},
year = {2001},
url = {https://doi.org/10.1006/aama.2001.0759},
doi = {10.1006/AAMA.2001.0759},
timestamp = {Thu, 28 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/aam/BilleraHV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gis/LagacherieH97,
author = {Philippe Lagacherie and
Susan P. Holmes},
title = {Addressing Geographical Data Errors in a Classification Tree for Soil
Unit Prediction},
journal = {Int. J. Geogr. Inf. Sci.},
volume = {11},
number = {2},
pages = {183--198},
year = {1997},
url = {https://doi.org/10.1080/136588197242455},
doi = {10.1080/136588197242455},
timestamp = {Tue, 12 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gis/LagacherieH97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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