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BibTeX records: Yixue Li
@article{DBLP:journals/inffus/CenDLZDMJYL24, author = {Xiaoping Cen and Wei Dong and Wei Lv and Yi Zhao and Fred Dubee and Alexios{-}Fotios A. Mentis and Dragomirka Jovic and Huanming Yang and Yixue Li}, title = {Towards interpretable imaging genomics analysis: Methodological developments and applications}, journal = {Inf. Fusion}, volume = {102}, pages = {102032}, year = {2024}, url = {https://doi.org/10.1016/j.inffus.2023.102032}, doi = {10.1016/J.INFFUS.2023.102032}, timestamp = {Tue, 28 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/inffus/CenDLZDMJYL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2402-18028, author = {Xiaosong Wang and Xiaofan Zhang and Guotai Wang and Junjun He and Zhongyu Li and Wentao Zhu and Yi Guo and Qi Dou and Xiaoxiao Li and Dequan Wang and Liang Hong and Qicheng Lao and Tong Ruan and Yukun Zhou and Yixue Li and Jie Zhao and Kang Li and Xin Sun and Lifeng Zhu and Shaoting Zhang}, title = {OpenMEDLab: An Open-source Platform for Multi-modality Foundation Models in Medicine}, journal = {CoRR}, volume = {abs/2402.18028}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2402.18028}, doi = {10.48550/ARXIV.2402.18028}, eprinttype = {arXiv}, eprint = {2402.18028}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2402-18028.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fbinf/LiuLZ23, author = {Yuexing Liu and Yixue Li and Tao Zeng}, title = {Multi-omics of extracellular vesicles: An integrative representation of functional mediators and perspectives on lung disease study}, journal = {Frontiers Bioinform.}, volume = {3}, year = {2023}, url = {https://doi.org/10.3389/fbinf.2023.1117271}, doi = {10.3389/FBINF.2023.1117271}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fbinf/LiuLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CaoLMJLHLCZLLZ23, author = {Ruifang Cao and Yunchao Ling and Jiayue Meng and Ao Jiang and Ruijin Luo and Qinwen He and Anan Li and Yujie Chen and Zoutao Zhang and Feng Liu and Yixue Li and Guoqing Zhang}, title = {{SMDB:} a Spatial Multimodal Data Browser}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{W1}}, pages = {553--559}, year = {2023}, url = {https://doi.org/10.1093/nar/gkad413}, doi = {10.1093/NAR/GKAD413}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CaoLMJLHLCZLLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/remotesensing/PengYLZ23, author = {Bin Peng and Jiuchun Yang and Yixue Li and Shuwen Zhang}, title = {Land-Use Optimization Based on Ecological Security Pattern - {A} Case Study of Baicheng, Northeast China}, journal = {Remote. Sens.}, volume = {15}, number = {24}, pages = {5671}, year = {2023}, url = {https://doi.org/10.3390/rs15245671}, doi = {10.3390/RS15245671}, timestamp = {Sat, 10 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/remotesensing/PengYLZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/Li22, author = {Yixue Li}, title = {A Beloved Bioinformatician Buddy - In Memory of Professor Weimin Zhu}, journal = {Genom. Proteom. Bioinform.}, volume = {20}, number = {6}, pages = {1037--1039}, year = {2022}, url = {https://doi.org/10.1016/j.gpb.2022.12.006}, doi = {10.1016/J.GPB.2022.12.006}, timestamp = {Thu, 15 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/gpb/Li22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/XueBZZXHZLZCZZS22, author = {Yongbiao Xue and Yiming Bao and Zhang Zhang and Wenming Zhao and Jing{-}Fa Xiao and Shunmin He and Guoqing Zhang and Yixue Li and Guoping Zhao and Runsheng Chen and Jingyao Zeng and Yadong Zhang and Yunfei Shang and Jialin Mai and Shuo Shi and Mingming Lu and Congfan Bu and Zhewen Zhang and Zhenglin Du and Yinying Wang and Hongen Kang and Tianyi Xu and Lili Hao and Peilin Jia and Shuai Jiang and Qiheng Qian and Tongtong Zhu and Wenting Zong and Tong Jin and Yuansheng Zhang and Dong Zou and Qiang Du and Changrui Feng and Lina Ma and Sisi Zhang and Anke Wang and Lili Dong and Yanqing Wang and Wan Liu and Xing Yan and Yunchao Ling and Zhihua Zhou and Wang Kang and Tao Zhang and Shuai Ma and Haoteng Yan and Zunpeng Liu and Zejun Ji and Yusheng Cai and Si Wang and Moshi Song and Jie Ren and Qi Zhou and Jing Qu and Weiqi Zhang and Guanghui Liu and Xu Chen and Tingting Chen and Yanling Sun and Caixia Yu and Bixia Tang and Junwei Zhu and Shuang Zhai and Yubin Sun and Qiancheng Chen and Xiaoyu Yang and Xin Zhang and Zhengqi Sang and Yonggang Wang and Yilin Zhao and Huanxin Chen and Li Lan and Yingke Ma and Yaokai Jia and Xinchang Zheng and Meili Chen and Ming Chen and Guangyi Niu and Rong Pan and Wei Jing and Jian Sang and Chang Liu and Yujia Xiong and Mochen Zhang and Guoliang Wang and Lizhi Yi and Wei Zhao and Song Wu and Zhuang Xiong and Rujiao Li and Zheng Gong and Lin Liu and Zhao Li and Qianpeng Li and Sicheng Luo and Jiajia Wang and Yirong Shi and Honghong Zhou and Peng Zhang and Tingrui Song and Yanyan Li and Fei Yang and Mengwei Li and Zhaohua Li and Dongmei Tian and Xiaonan Liu and Cuiping Li and Xufei Teng and Shuhui Song and Yang Zhang and Ruru Chen and Rongqin Zhang and Feng Xu and Yifan Wang and Chenfen Zhou and Haizhou Wang and Andrew E. Teschendorff and Yungang He and Zhen Yang and Lun Li and Na Li and Ying Cui and Guangya Duan and Gangao Wu and Tianhao Huang and Enhui Jin and Hailong Kang and Zhonghuang Wang and Hua Chen and Mingkun Li and Wanshan Ning and Yu Xue and Yanhu Liu and Qijun Zhou and Xingyan Liu and Longlong Zhang and Bingyu Mao and Shihua Zhang and Yaping Zhang and Guodong Wang and Qianghui Zhu and Xin Li and Menghua Li and Yuanming Liu and Hong Luo and Xiaoyuan Wu and Haichun Jing and Yitong Pan and Leisheng Shi and Zhixiang Zuo and Jian Ren and Xinxin Zhang and Yun Xiao and Xia Li and Dan Liu and Chi Zhang and Zheng Zhao and Tao Jiang and Wanying Wu and Fangqing Zhao and Xianwen Meng and Di Peng and Hao Luo and Feng Gao and Shaofeng Lin and Chuijie Liu and Anyuan Guo and Hao Yuan and Tianhan Su and Yong E. Zhang and Yincong Zhou and Guoji Guo and Shanshan Fu and Xiaodan Tan and Weizhi Zhang and Mei Luo and Yubin Xie and Chenwei Wang and Xingyu Liao and Xin Gao and Jianxin Wang and Guiyan Xie and Chunhui Yuan and Feng Tian and Dechang Yang and Ge Gao and Dachao Tang and Wenyi Wu and Yujie Gou and Cheng Han and Qinghua Cui and Xiangshang Li and Chuan{-}Yun Li and Xiaotong Luo}, title = {Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {27--38}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab951}, doi = {10.1093/NAR/GKAB951}, timestamp = {Mon, 04 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/XueBZZXHZLZCZZS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/ChenWLLZH22, author = {Weiran Chen and Md Wahiduzzaman and Quan Li and Yixue Li and Guangyong Zheng and Tao Huang}, title = {Comparative analysis of NovaSeq 6000 and {MGISEQ} 2000 single-cell {RNA} sequencing data}, journal = {Quant. Biol.}, volume = {10}, number = {4}, pages = {333}, year = {2022}, url = {https://doi.org/10.15302/j-qb-022-0295}, doi = {10.15302/J-QB-022-0295}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/ChenWLLZH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiDLSLL21, author = {Quanxue Li and Wentao Dai and Jixiang Liu and Qingqing Sang and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {DysRegSig: an {R} package for identifying gene dysregulations and building mechanistic signatures in cancer}, journal = {Bioinform.}, volume = {37}, number = {3}, pages = {429--430}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa688}, doi = {10.1093/BIOINFORMATICS/BTAA688}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiDLSLL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/XueB0ZXHZLZCSMZ21, author = {Yongbiao Xue and Yiming Bao and Zhang Zhang and Wenming Zhao and Jing{-}Fa Xiao and Shunmin He and Guoqing Zhang and Yixue Li and Guoping Zhao and Runsheng Chen and Shuhui Song and Lina Ma and Dong Zou and Dongmei Tian and Cuiping Li and Junwei Zhu and Zheng Gong and Meili Chen and Anke Wang and Yingke Ma and Mengwei Li and Xufei Teng and Ying Cui and Guangya Duan and Mochen Zhang and Tong Jin and Chengmin Shi and Zhenglin Du and Yadong Zhang and Chuandong Liu and Rujiao Li and Jingyao Zeng and Lili Hao and Shuai Jiang and Hua Chen and Dali Han and Tao Zhang and Wang Kang and Fei Yang and Jing Qu and Weiqi Zhang and Guanghui Liu and Lin Liu and Yang Zhang and Guangyi Niu and Tongtong Zhu and Changrui Feng and Xiaonan Liu and Yuansheng Zhang and Zhao Li and Ruru Chen and Qianpeng Li and Zhongyi Hua and Chao Jiang and Ziyuan Chen and Fangshu He and Yuyang Zhao and Yan Jin and Luqi Huang and Yuan Yuan and Chenfen Zhou and Qingwei Xu and Sheng He and Wei Ye and Ruifang Cao and Pengyu Wang and Yunchao Ling and Xing Yan and Qingzhong Wang and Qiang Du and Wenting Zong and Hongen Kang and Zhuang Xiong and Wendi Huan and Sirui Zhang and Qiguang Xia and Xiaojuan Fan and Zefeng Wang and Xu Chen and Tingting Chen and Sisi Zhang and Bixia Tang and Lili Dong and Zhewen Zhang and Zhonghuang Wang and Hailong Kang and Yanqing Wang and Song Wu and Ming Chen and Chang Liu and Yujia Xiong and Xueying Shao and Yanyan Li and Honghong Zhou and Xiaomin Chen and Yu Zheng and Quan Kang and Di Hao and Lili Zhang and Huaxia Luo and Yajing Hao and Peng Zhang and Zhi Nie and Shuhuan Yu and Jian Sang and Zhaohua Li and Xiangquan Zhang and Qing Zhou and Shuang Zhai and Yaping Zhang and Guodong Wang and Qianghui Zhu and Xin Li and Menghua Li and Jun Yan and Chen Li and Zhennan Wang and Xiangfeng Wang and Yuanming Liu and Hong Luo and Xiaoyuan Wu and Hai{-}Chun Jing and Lianhe Zhao and Jiajia Wang and Tinrui Song and Yi Zhao and Furrukh Mehmood and Shahid Ali and Amjad Ali and Shoaib Saleem and Irfan Hussain and Amir Ali Abbasi and Zhixiang Zuo and Jian Ren and Xinxin Zhang and Yun Xiao and Xia Li and Yiran Tu and Yu Xue and Wanying Wu and Peifeng Ji and Fangqing Zhao and Xianwen Meng and Di Peng and Hao Luo and Feng Gao and Wanshan Ning and Shaofeng Lin and Teng Liu and An{-}Yuan Guo and Hao Yuan and Yong E. Zhang and Xiaodan Tan and Weizhi Zhang and Yubin Xie and Chenwei Wang and Chun{-}Jie Liu and De{-}Chang Yang and Feng Tian and Ge Gao and Dachao Tang and Lan Yao and Qinghua Cui and Ni A. An and Chuan{-}Yun Li and Xiaotong Luo}, title = {Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D18--D28}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1022}, doi = {10.1093/NAR/GKAA1022}, timestamp = {Wed, 13 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/XueB0ZXHZLZCSMZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/LiLBSLW20, author = {Shiyan Li and Hongxin Liu and Shiyu Bian and Xianzheng Sha and Yixue Li and Yin Wang}, title = {The accelerated aging model reveals critical mechanisms of late-onset Parkinson's disease}, journal = {BioData Min.}, volume = {13}, number = {1}, pages = {4}, year = {2020}, url = {https://doi.org/10.1186/s13040-020-00215-w}, doi = {10.1186/S13040-020-00215-W}, timestamp = {Tue, 13 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/LiLBSLW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WuDXZLL20, author = {Leilei Wu and Qinfang Deng and Ze Xu and Songwen Zhou and Chao Li and Yi{-}Xue Li}, title = {A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor {DNA}}, journal = {{BMC} Bioinform.}, volume = {21}, number = {1}, pages = {127}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-3412-2}, doi = {10.1186/S12859-020-3412-2}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WuDXZLL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/SunLPYCLZ20, author = {Yidi Sun and Chen Li and Shichao Pang and Qianlan Yao and Luonan Chen and Yixue Li and Rong Zeng}, title = {Kinase-substrate Edge Biomarkers Provide {A} More Accurate Prognostic Prediction in ER-negative Breast Cancer}, journal = {Genom. Proteom. Bioinform.}, volume = {18}, number = {5}, pages = {525--538}, year = {2020}, url = {https://doi.org/10.1016/j.gpb.2019.11.012}, doi = {10.1016/J.GPB.2019.11.012}, timestamp = {Mon, 25 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/gpb/SunLPYCLZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SunGL0C0XLLY20, author = {Hong Sun and Yangfan Guo and Xiaoping Lan and Jia Jia and Xiaoshu Cai and Guoqing Zhang and Jingjing Xie and Qian Liang and Yixue Li and Guangjun Yu}, title = {PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D977--D982}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz930}, doi = {10.1093/NAR/GKZ930}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SunGL0C0XLLY20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/PangYZLW19, author = {Shichao Pang and Junchen Yang and Yilei Zhao and Yixue Li and Jingfang Wang}, title = {Computational prediction and functional analysis of arsenic-binding proteins in human cells}, journal = {Quant. Biol.}, volume = {7}, number = {3}, pages = {182--189}, year = {2019}, url = {https://doi.org/10.1007/s40484-019-0169-6}, doi = {10.1007/S40484-019-0169-6}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/PangYZLW19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ZhouXBWL18, author = {Lu Zhou and Qingyu Xiao and Jie Bi and Zhen Wang and Yixue Li}, title = {RabGTD: a comprehensive database of rabbit genome and transcriptome}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay075}, year = {2018}, url = {https://doi.org/10.1093/database/bay075}, doi = {10.1093/DATABASE/BAY075}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/ZhouXBWL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DaiLLLL18, author = {Wentao Dai and Quanxue Li and Bing{-}Ya Liu and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Differential networking meta-analysis of gastric cancer across Asian and American racial groups}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {17--28}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0564-z}, doi = {10.1186/S12918-018-0564-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLLL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/artmed/LiYZWL17, author = {Zhen Li and Qianlan Yao and Songjian Zhao and Zhen Wang and Yixue Li}, title = {Protein coding gene {CRNKL1} as a potential prognostic biomarker in esophageal adenocarcinoma}, journal = {Artif. Intell. Medicine}, volume = {76}, pages = {1--6}, year = {2017}, url = {https://doi.org/10.1016/j.artmed.2017.01.002}, doi = {10.1016/J.ARTMED.2017.01.002}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/artmed/LiYZWL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/artmed/LiLDLL17, author = {Quanxue Li and Junyi Li and Wentao Dai and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis}, journal = {Artif. Intell. Medicine}, volume = {77}, pages = {12--22}, year = {2017}, url = {https://doi.org/10.1016/j.artmed.2017.02.006}, doi = {10.1016/J.ARTMED.2017.02.006}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/artmed/LiLDLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcbdd/LiDL17, author = {Ru{-}Dong Li and Guohui Ding and Yixue Li}, title = {Virtualisation of gene knockout experiments based on kinetic modelling: Escherichia coli as an algorithmic case}, journal = {Int. J. Comput. Biol. Drug Des.}, volume = {10}, number = {2}, pages = {157--188}, year = {2017}, url = {https://doi.org/10.1504/IJCBDD.2017.10004578}, doi = {10.1504/IJCBDD.2017.10004578}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijcbdd/LiDL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/WangWL17, author = {Zhen Wang and Zefeng Wang and Yixue Li}, title = {Strategic planning for national biomedical big data infrastructure in China}, journal = {Quant. Biol.}, volume = {5}, number = {3}, pages = {272--275}, year = {2017}, url = {https://doi.org/10.1007/s40484-017-0114-5}, doi = {10.1007/S40484-017-0114-5}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/WangWL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuGWLFDL16, author = {Zhi Liu and Tuantuan Gui and Zhen Wang and Hong Li and Yunhe Fu and Xiao Dong and Yixue Li}, title = {cisASE: a likelihood-based method for detecting putative \emph{cis}-regulated allele-specific expression in {RNA} sequencing data}, journal = {Bioinform.}, volume = {32}, number = {21}, pages = {3291--3297}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw416}, doi = {10.1093/BIOINFORMATICS/BTW416}, timestamp = {Tue, 28 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGWLFDL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangWYPWWSQLL16, author = {Jing Yang and Su{-}Juan Wu and Shao{-}You Yang and Jia{-}Wei Peng and Shi{-}Nuo Wang and Fu{-}Yan Wang and Yu{-}Xing Song and Ting Qi and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {DNetDB: The human disease network database based on dysfunctional regulation mechanism}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {36}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0280-5}, doi = {10.1186/S12918-016-0280-5}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangWYPWWSQLL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DaiWMLJL16, author = {Wentao Dai and Aiping Wu and Liang{-}Xiao Ma and Yi{-}Xue Li and Taijiao Jiang and Yuan{-}Yuan Li}, title = {A novel index of protein-protein interface propensity improves interface residue recognition}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {4}, pages = {381--392}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0351-7}, doi = {10.1186/S12918-016-0351-7}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/DaiWMLJL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WuLCYLL16, author = {Su{-}Juan Wu and Junyi Li and Mushui Cao and Jing Yang and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes}, journal = {{BMC} Syst. Biol.}, volume = {10}, number = {{S-3}}, pages = {71}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0315-y}, doi = {10.1186/S12918-016-0315-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WuLCYLL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/Li16, author = {Yi{-}Xue Li}, editor = {Tianhai Tian and Qinghua Jiang and Yunlong Liu and Kevin Burrage and Jiangning Song and Yadong Wang and Xiaohua Hu and Shinichi Morishita and Qian Zhu and Guohua Wang}, title = {Whole genome sequencing of disease animal models}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2016, Shenzhen, China, December 15-18, 2016}, pages = {2}, publisher = {{IEEE} Computer Society}, year = {2016}, url = {https://doi.org/10.1109/BIBM.2016.7822475}, doi = {10.1109/BIBM.2016.7822475}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/Li16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LvWMYWWCJLL15, author = {Yingli Lv and Shuyuan Wang and Fanlin Meng and Lei Yang and Zhifeng Wang and Jing Wang and Xiaowen Chen and Wei Jiang and Yixue Li and Xia Li}, title = {Identifying novel associations between small molecules and miRNAs based on integrated molecular networks}, journal = {Bioinform.}, volume = {31}, number = {22}, pages = {3638--3644}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv417}, doi = {10.1093/BIOINFORMATICS/BTV417}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LvWMYWWCJLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangWLL15, author = {Jing Yang and Su{-}Juan Wu and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {DSviaDRM: an {R} package for estimating disease similarity via dysfunctional regulation mechanism}, journal = {Bioinform.}, volume = {31}, number = {23}, pages = {3870--3872}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv474}, doi = {10.1093/BIOINFORMATICS/BTV474}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangWLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SunYTL15, author = {Hong Sun and Shuang Yang and Liangliang Tun and Yixue Li}, title = {IAOseq: inferring abundance of overlapping genes using RNA-seq data}, journal = {{BMC} Bioinform.}, volume = {16}, number = {{S-1}}, pages = {S3}, year = {2015}, url = {https://doi.org/10.1186/1471-2105-16-S1-S3}, doi = {10.1186/1471-2105-16-S1-S3}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SunYTL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmmm/SunZCLDLX15, author = {Bo Sun and Menghuan Zhang and Peng Cui and Hong Li and Jia Jia Dong and Yixue Li and Lu Xie}, title = {Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases}, journal = {Comput. Math. Methods Medicine}, volume = {2015}, pages = {124630:1--124630:12}, year = {2015}, url = {https://doi.org/10.1155/2015/124630}, doi = {10.1155/2015/124630}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmmm/SunZCLDLX15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmmm/LiuYLLL15, author = {Tiancheng Liu and Lin Yu and Lei Liu and Hong Li and Yixue Li}, title = {Comparative Transcriptomes and {EVO-DEVO} Studies Depending on Next Generation Sequencing}, journal = {Comput. Math. Methods Medicine}, volume = {2015}, pages = {896176:1--896176:10}, year = {2015}, url = {https://doi.org/10.1155/2015/896176}, doi = {10.1155/2015/896176}, timestamp = {Tue, 28 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmmm/LiuYLLL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GuiDLLW15, author = {Tuantuan Gui and Xiao Dong and Ru{-}Dong Li and Yixue Li and Zhen Wang}, title = {Identification of Hepatocellular Carcinoma-Related Genes with a Machine Learning and Network Analysis}, journal = {J. Comput. Biol.}, volume = {22}, number = {1}, pages = {63--71}, year = {2015}, url = {https://doi.org/10.1089/cmb.2014.0122}, doi = {10.1089/CMB.2014.0122}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/GuiDLLW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/LiJLYSHLYGMYLLZLLX14, author = {Jing Li and Jia Jia and Hong Li and Jian Yu and Han Sun and Ying He and Daqing Lv and Xiaojuan Yang and Michael O. Glocker and Liang{-}Xiao Ma and Jiabei Yang and Ling Li and Wei Li and Guoqing Zhang and Qian Liu and Yixue Li and Lu Xie}, title = {SysPTM 2.0: an updated systematic resource for post-translational modification}, journal = {Database J. Biol. Databases Curation}, volume = {2014}, year = {2014}, url = {https://doi.org/10.1093/database/bau025}, doi = {10.1093/DATABASE/BAU025}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/LiJLYSHLYGMYLLZLLX14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiDFWDL14, author = {Chao Li and Xiao Dong and Haiwei Fan and Chuan Wang and Guohui Ding and Yixue Li}, title = {The 3DGD: a database of genome 3D structure}, journal = {Bioinform.}, volume = {30}, number = {11}, pages = {1640--1642}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu081}, doi = {10.1093/BIOINFORMATICS/BTU081}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiDFWDL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/LiC14, author = {Yixue Li and Luonan Chen}, title = {Big Biological Data: Challenges and Opportunities}, journal = {Genom. Proteom. Bioinform.}, volume = {12}, number = {5}, pages = {187--189}, year = {2014}, url = {https://doi.org/10.1016/j.gpb.2014.10.001}, doi = {10.1016/J.GPB.2014.10.001}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/gpb/LiC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/XuYTSWLL13, author = {Huayong Xu and Hui Yu and Kang Tu and Qianqian Shi and Chaochun Wei and Yuan{-}Yuan Li and Yi{-}Xue Li}, title = {cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-2}}, pages = {S7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S2-S7}, doi = {10.1186/1752-0509-7-S2-S7}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/XuYTSWLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/CongMLW13, author = {Shan Cong and Xiao{-}Tu Ma and Yi{-}Xue Li and Jing{-}Fang Wang}, title = {Structural Basis for the Mutation-Induced Dysfunction of Human {CYP2J2:} {A} Computational Study}, journal = {J. Chem. Inf. Model.}, volume = {53}, number = {6}, pages = {1350--1357}, year = {2013}, url = {https://doi.org/10.1021/ci400003p}, doi = {10.1021/CI400003P}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/CongMLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ZerlotiniAYXLYGPBRKO13, author = {Adhemar Zerlotini and Eric R. G. R. Aguiar and Fudong Yu and Huayong Xu and Yixue Li and Neil D. Young and Robin B. Gasser and Anna V. Protasio and Matthew Berriman and David S. Roos and Jessica C. Kissinger and Guilherme C. Oliveira}, title = {SchistoDB: an updated genome resource for the three key schistosomes of humans}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {728--731}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1087}, doi = {10.1093/NAR/GKS1087}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ZerlotiniAYXLYGPBRKO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/DiwanCFLBHR13, author = {Piyush Diwan and Patricia Carey and Eric Franz and Yixue Li and Thomas Bitterman and David E. Hudak and Rajiv Ramnath}, editor = {Sung Y. Shin and Jos{\'{e}} Carlos Maldonado}, title = {Applying software product line engineering in building web portals for supercomputing services}, booktitle = {Proceedings of the 28th Annual {ACM} Symposium on Applied Computing, {SAC} '13, Coimbra, Portugal, March 18-22, 2013}, pages = {1765--1771}, publisher = {{ACM}}, year = {2013}, url = {https://doi.org/10.1145/2480362.2480694}, doi = {10.1145/2480362.2480694}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sac/DiwanCFLBHR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuTWMXLL12, author = {Hui Yu and Kang Tu and Yi{-}Jie Wang and Jun{-}Zhe Mao and Lu Xie and Yuan{-}Yuan Li and Yi{-}Xue Li}, title = {Combinatorial network of transcriptional regulation and microRNA regulation in human cancer}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {61}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-61}, doi = {10.1186/1752-0509-6-61}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YuTWMXLL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangGLW12, author = {Chuanli Wang and Longyun Guo and Yixue Li and Zhuo Wang}, title = {Systematic Comparison of {C3} and {C4} Plants Based on Metabolic Network Analysis}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-2}}, pages = {S9}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S2-S9}, doi = {10.1186/1752-0509-6-S2-S9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangGLW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZLLZGS12, author = {Yin Wang and Yuhua Zhou and Yixue Li and Zongxin Ling and Yan Zhu and Xiaokui Guo and Hong Sun}, title = {An improved dimensionality reduction method for meta-transcriptome indexing based diseases classification}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S12}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S12}, doi = {10.1186/1752-0509-6-S3-S12}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZLLZGS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YuZLLMLLH12, author = {Shu{-}Hao Yu and Lulu Zheng and Yun Li and Chunyan Li and Chenchen Ma and Yixue Li and Xuan Li and Pei Hao}, title = {A cross-species analysis method to analyze animal models' similarity to human's disease state}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S18}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S18}, doi = {10.1186/1752-0509-6-S3-S18}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YuZLLMLLH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangYPHLSXL12, author = {Yajun Wang and Yao Yu and Bohu Pan and Pei Hao and Yixue Li and Zhifeng Shao and Xiaogang Xu and Xuan Li}, title = {Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-3}}, pages = {S21}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S3-S21}, doi = {10.1186/1752-0509-6-S3-S21}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangYPHLSXL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/WangWWLW12, author = {Ying Wang and Xiaolin Wu and Dong{-}Qing Wei and Yi{-}Xue Li and Jing{-}Fang Wang}, title = {Autoinhibitory Mechanism for the Mutation-Induced Impaired {FGF9} Signaling}, journal = {J. Chem. Inf. Model.}, volume = {52}, number = {9}, pages = {2422--2429}, year = {2012}, url = {https://doi.org/10.1021/ci3003045}, doi = {10.1021/CI3003045}, timestamp = {Mon, 25 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/WangWWLW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HeZJYLSYHZLLWLZX12, author = {Ying He and Menghuan Zhang and Yuanhu Ju and Zhong{-}Hao Yu and Daqing Lv and Han Sun and Weilan Yuan and Fei He and Jianshe Zhang and Hong Li and Jing Li and Rui Wang{-}Sattler and Yixue Li and Guoqing Zhang and Lu Xie}, title = {dbDEPC 2.0: updated database of differentially expressed proteins in human cancers}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {964--971}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr936}, doi = {10.1093/NAR/GKR936}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/HeZJYLSYHZLLWLZX12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ZhaoLCLXLLZ12, author = {Xin Zhao and Qi Liu and Qingqing Cai and Yanyun Li and Congjian Xu and Yixue Li and Zuofeng Li and Xiaoyan Zhang}, title = {Dr.VIS: a database of human disease-related viral integration sites}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {1041--1046}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1142}, doi = {10.1093/NAR/GKR1142}, timestamp = {Wed, 18 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ZhaoLCLXLLZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isb/XuYTSWLL12, author = {Huayong Xu and Hui Yu and Kang Tu and Qianqian Shi and Chaochun Wei and Yuanyuan Li and Yixue Li}, title = {cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets}, booktitle = {6th {IEEE} International Conference on Systems Biology, {ISB} 2012, Xian, China, August 18-20, 2012}, pages = {113--117}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ISB.2012.6314122}, doi = {10.1109/ISB.2012.6314122}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isb/XuYTSWLL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isb/KangLL12, author = {Bin Kang and Yuan{-}Yuan Li and Yixue Li}, title = {Anti-clustering of circadian gene expression in mouse liver genome}, booktitle = {6th {IEEE} International Conference on Systems Biology, {ISB} 2012, Xian, China, August 18-20, 2012}, pages = {273--279}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ISB.2012.6314149}, doi = {10.1109/ISB.2012.6314149}, timestamp = {Wed, 12 Jul 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isb/KangLL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangSZYLLLLL11, author = {Qianghu Wang and Jie Sun and Meng Zhou and Haixiu Yang and Yan Li and Xiang Li and Sali Lv and Xia Li and Yixue Li}, title = {A novel network-based method for measuring the functional relationship between gene sets}, journal = {Bioinform.}, volume = {27}, number = {11}, pages = {1521--1528}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr154}, doi = {10.1093/BIOINFORMATICS/BTR154}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangSZYLLLLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangZLC11, author = {Kailin Tang and Ruixin Zhu and Yixue Li and Zhi{-}Wei Cao}, title = {Discrimination of Approved Drugs from Experimental Drugs by Learning Methods}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {157}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-157}, doi = {10.1186/1471-2105-12-157}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TangZLC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuLYLLL11, author = {Hui Yu and Bao{-}Hong Liu and Zhi{-}Qiang Ye and Chun Li and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {315}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-315}, doi = {10.1186/1471-2105-12-315}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YuLYLLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiSDL11, author = {Yan Ji and Yixiang Shi and Guohui Ding and Yixue Li}, title = {A new strategy for better genome assembly from very short reads}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {493}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-493}, doi = {10.1186/1471-2105-12-493}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiSDL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengWWL11, author = {Guangyong Zheng and Haibo Wang and Chaochun Wei and Yixue Li}, title = {iGepros: an integrated gene and protein annotation server for biological nature exploration}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-14}}, pages = {S6}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-S14-S6}, doi = {10.1186/1471-2105-12-S14-S6}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengWWL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiLLRLL11, author = {Ru{-}Dong Li and Yuan{-}Yuan Li and Lingyi Lu and Cong Ren and Yi{-}Xue Li and Lei Liu}, title = {An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis}, journal = {{BMC} Syst. Biol.}, volume = {5}, number = {{S-1}}, pages = {S12}, year = {2011}, url = {https://doi.org/10.1186/1752-0509-5-S1-S12}, doi = {10.1186/1752-0509-5-S1-S12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiLLRLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcbdd/HuangLLDTTLDX11, author = {Tao Huang and Lei Liu and Qi Liu and Guohui Ding and Yejun Tan and Zhidong Tu and Yixue Li and Hongyue Dai and Lu Xie}, title = {The role of Hepatitis {C} Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma}, journal = {Int. J. Comput. Biol. Drug Des.}, volume = {4}, number = {1}, pages = {5--18}, year = {2011}, url = {https://doi.org/10.1504/IJCBDD.2011.038654}, doi = {10.1504/IJCBDD.2011.038654}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijcbdd/HuangLLDTTLDX11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/LiTZWLHL11, author = {Yun Li and Kang Tu and Siyuan Zheng and Jingfang Wang and Yixue Li and Pei Hao and Xuan Li}, title = {Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds}, journal = {J. Bioinform. Comput. Biol.}, volume = {9}, number = {4}, pages = {503--519}, year = {2011}, url = {https://doi.org/10.1142/S0219720011005446}, doi = {10.1142/S0219720011005446}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/LiTZWLHL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/LiWWL11, author = {Jue Li and Dong{-}Qing Wei and Jing{-}Fang Wang and Yi{-}Xue Li}, title = {A Negative Cooperativity Mechanism of Human {CYP2E1} Inferred from Molecular Dynamics Simulations and Free Energy Calculations}, journal = {J. Chem. Inf. Model.}, volume = {51}, number = {12}, pages = {3217--3225}, year = {2011}, url = {https://doi.org/10.1021/ci2004016}, doi = {10.1021/CI2004016}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/LiWWL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HuangZCWLCWSZWLLCCZ11, author = {Zhimin Huang and Liang Zhu and Yan Cao and Geng Wu and Xinyi Liu and Yingyi Chen and Qi Wang and Ting Shi and Yaxue Zhao and Yuefei Wang and Weihua Li and Yixue Li and Haifeng Chen and Guoqiang Chen and Jian Zhang}, title = {{ASD:} a comprehensive database of allosteric proteins and modulators}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {663--669}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1022}, doi = {10.1093/NAR/GKQ1022}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/HuangZCWLCWSZWLLCCZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/YeYKZTTLZLCLC11, author = {Hao Ye and Li Ye and Hong Kang and Duanfeng Zhang and Lin Tao and Kailin Tang and Xueping Liu and Ruixin Zhu and Qi Liu and Yu Zong Chen and Yixue Li and Zhi{-}Wei Cao}, title = {{HIT:} linking herbal active ingredients to targets}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {1055--1059}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1165}, doi = {10.1093/NAR/GKQ1165}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/YeYKZTTLZLCLC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icic/FengGFLL11, author = {Kaiyan Feng and Junhui Gao and Kairui Feng and Lei Liu and Yixue Li}, editor = {De{-}Shuang Huang and Yong Gan and Phalguni Gupta and M. Michael Gromiha}, title = {Active and Passive Nearest Neighbor Algorithm: {A} Newly-Developed Supervised Classifier}, booktitle = {Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence - 7th International Conference, {ICIC} 2011, Zhengzhou, China, August 11-14, 2011, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {6839}, pages = {189--196}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-25944-9\_25}, doi = {10.1007/978-3-642-25944-9\_25}, timestamp = {Sun, 02 Jun 2019 21:22:55 +0200}, biburl = {https://dblp.org/rec/conf/icic/FengGFLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/daglib/0025928, editor = {Limin Angela Liu and Dong{-}Qing Wei and Yixue Li and Huimin Lei}, title = {Handbook of Research on Computational and Systems Biology - Interdisciplinary Applications}, publisher = {{IGI} Global}, year = {2011}, url = {https://doi.org/10.4018/978-1-60960-491-2}, doi = {10.4018/978-1-60960-491-2}, isbn = {978-1-60960-491-2}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/0025928.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuYTLLL10, author = {Bao{-}Hong Liu and Hui Yu and Kang Tu and Chun Li and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {{DCGL:} an {R} package for identifying differentially coexpressed genes and links from gene expression microarray data}, journal = {Bioinform.}, volume = {26}, number = {20}, pages = {2637--2638}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq471}, doi = {10.1093/BIOINFORMATICS/BTQ471}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYTLLL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenYLL10, author = {Yun{-}Qin Chen and Hui Yu and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Sorting out inherent features of head-to-head gene pairs by evolutionary conservation}, journal = {{BMC} Bioinform.}, volume = {11}, number = {{S-11}}, pages = {S16}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-S11-S16}, doi = {10.1186/1471-2105-11-S11-S16}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenYLL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuTHDTLLDX10, author = {Qi Liu and Yejun Tan and Tao Huang and Guohui Ding and Zhidong Tu and Lei Liu and Yixue Li and Hongyue Dai and Lu Xie}, title = {TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating {TF-DNA} interactions and protein post-translational modifications information}, journal = {{BMC} Bioinform.}, volume = {11}, number = {{S-11}}, pages = {S5}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-S11-S5}, doi = {10.1186/1471-2105-11-S11-S5}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuTHDTLLDX10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiLL10, author = {Yixiang Shi and Yi{-}Xue Li and Yuan{-}Yuan Li}, title = {Large number of phosphotransferase genes in the Clostridium beijerinckii {NCIMB} 8052 genome and the study on their evolution}, journal = {{BMC} Bioinform.}, volume = {11}, number = {{S-11}}, pages = {S9}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-S11-S9}, doi = {10.1186/1471-2105-11-S11-S9}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiLL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/LiHDWXL10, author = {Hong Li and Ying He and Guohui Ding and Chuan Wang and Lu Xie and Yixue Li}, title = {dbDEPC: a database of Differentially Expressed Proteins in human Cancers}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {658--664}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp933}, doi = {10.1093/NAR/GKP933}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/LiHDWXL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/HuangDLLTDLTX10, author = {Tao Huang and Guohui Ding and Yixue Li and Lei Liu and Eugene Tan and Hongyue Dai and Qi Liu and Zhidong Tu and Lu Xie}, editor = {Aidong Zhang and Mark Borodovsky and Gultekin {\"{O}}zsoyoglu and Armin R. Mikler}, title = {Dysfunctional gene/protein networks in hepatitis {C} virus-induced hepatocellular cirrhosis and carcinoma}, booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August 2-4, 2010}, pages = {502--507}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1854776.1854873}, doi = {10.1145/1854776.1854873}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcb/HuangDLLTDLTX10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/WangDYLL09, author = {Zhen Wang and Guohui Ding and Zhong{-}Hao Yu and Lei Liu and Yixue Li}, title = {CHSMiner: a {GUI} tool to identify chromosomal homologous segments}, journal = {Algorithms Mol. Biol.}, volume = {4}, year = {2009}, url = {https://doi.org/10.1186/1748-7188-4-2}, doi = {10.1186/1748-7188-4-2}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/WangDYLL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/YuYZSCLL09, author = {Hui Yu and Fudong Yu and Guoqing Zhang and Xiang Shen and Yun{-}Qin Chen and Yuan{-}Yuan Li and Yi{-}Xue Li}, title = {{DBH2H:} vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels}, journal = {Database J. Biol. Databases Curation}, volume = {2009}, year = {2009}, url = {https://doi.org/10.1093/database/bap006}, doi = {10.1093/DATABASE/BAP006}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/YuYZSCLL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiDXL09, author = {Hong Li and Guohui Ding and Lu Xie and Yixue Li}, title = {PAnnBuilder: an {R} package for assembling proteomic annotation data}, journal = {Bioinform.}, volume = {25}, number = {8}, pages = {1094--1095}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp100}, doi = {10.1093/BIOINFORMATICS/BTP100}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiDXL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HaoZPTGWZL09, author = {Pei Hao and Siyuan Zheng and Jie Ping and Kang Tu and Christian Gieger and Rui Wang{-}Sattler and Yang Zhong and Yixue Li}, title = {Human gene expression sensitivity according to large scale meta-analysis}, journal = {{BMC} Bioinform.}, volume = {10}, number = {{S-1}}, year = {2009}, url = {https://doi.org/10.1186/1471-2105-10-S1-S56}, doi = {10.1186/1471-2105-10-S1-S56}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HaoZPTGWZL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuTZLDPHL09, author = {Yao Yu and Kang Tu and Siyuan Zheng and Yun Li and Guohui Ding and Jie Ping and Pei Hao and Yixue Li}, title = {{GEOGLE:} context mining tool for the correlation between gene expression and the phenotypic distinction}, journal = {{BMC} Bioinform.}, volume = {10}, pages = {264}, year = {2009}, url = {https://doi.org/10.1186/1471-2105-10-264}, doi = {10.1186/1471-2105-10-264}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YuTZLDPHL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LiALRST09, author = {Yong Fuga Li and Randy J. Arnold and Yixue Li and Predrag Radivojac and Quanhu Sheng and Haixu Tang}, title = {A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics}, journal = {J. Comput. Biol.}, volume = {16}, number = {8}, pages = {1183--1193}, year = {2009}, url = {https://doi.org/10.1089/cmb.2009.0018}, doi = {10.1089/CMB.2009.0018}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LiALRST09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DingLKLT09, author = {Guohui Ding and Peter Lorenz and Michael Kreutzer and Yixue Li and Hans{-}J{\"{u}}rgen Thiesen}, title = {SysZNF: the {C2H2} zinc finger gene database}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {267--273}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn782}, doi = {10.1093/NAR/GKN782}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/DingLKLT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/LiPLLWWLZ09, author = {Su{-}Jun Li and Mao Peng and Hong Li and Boshu Liu and Chuan Wang and Jia{-}Rui Wu and Yi{-}Xue Li and Rong Zeng}, title = {Sys-BodyFluid: a systematical database for human body fluid proteome research}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {907--912}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn849}, doi = {10.1093/NAR/GKN849}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/LiPLLWWLZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/XiPDLL09, author = {Hong Xi and Jongsun Park and Guohui Ding and Yong{-}Hwan Lee and Yixue Li}, title = {SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {913--920}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn848}, doi = {10.1093/NAR/GKN848}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/XiPDLL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlvesACLRSTXZR08, author = {Pedro Alves and Randy J. Arnold and David E. Clemmer and Yixue Li and James P. Reilly and Quanhu Sheng and Haixu Tang and Zhiyin Xun and Rong Zeng and Predrag Radivojac}, title = {Fast and accurate identification of semi-tryptic peptides in shotgun proteomics}, journal = {Bioinform.}, volume = {24}, number = {1}, pages = {102--109}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btm545}, doi = {10.1093/BIOINFORMATICS/BTM545}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlvesACLRSTXZR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhengSWWYLMDZHLL08, author = {Siyuan Zheng and Jia Sheng and Chuan Wang and Xiaojing Wang and Yao Yu and Yun Li and Alex Michie and Jianliang Dai and Yang Zhong and Pei Hao and Lei Liu and Yixue Li}, title = {{MPSQ:} a web tool for protein-state searching}, journal = {Bioinform.}, volume = {24}, number = {20}, pages = {2412--2413}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn427}, doi = {10.1093/BIOINFORMATICS/BTN427}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengSWWYLMDZHLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhengTYXWXZL08, author = {Guangyong Zheng and Kang Tu and Qing Yang and Yun Xiong and Chaochun Wei and Lu Xie and Yangyong Zhu and Yixue Li}, title = {{ITFP:} an integrated platform of mammalian transcription factors}, journal = {Bioinform.}, volume = {24}, number = {20}, pages = {2416--2417}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn439}, doi = {10.1093/BIOINFORMATICS/BTN439}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengTYXWXZL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuSLZLL08, author = {Qingwei Xu and Yixiang Shi and Qiang Lu and Guoqing Zhang and Qing{-}ming Luo and Yixue Li}, title = {GORouter: an {RDF} model for providing semantic query and inference services for Gene Ontology and its associations}, journal = {{BMC} Bioinform.}, volume = {9}, number = {{S-1}}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-S1-S6}, doi = {10.1186/1471-2105-9-S1-S6}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/XuSLZLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangWZSTLC08, author = {Xiaojing Wang and Di Wu and Siyuan Zheng and Jing Sun and Lin Tao and Yixue Li and Zhi{-}Wei Cao}, title = {Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies}, journal = {{BMC} Bioinform.}, volume = {9}, number = {{S-12}}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-S12-S20}, doi = {10.1186/1471-2105-9-S12-S20}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WangWZSTLC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengQYWXZL08, author = {Guangyong Zheng and Ziliang Qian and Qing Yang and Chaochun Wei and Lu Xie and Yangyong Zhu and Yixue Li}, title = {The combination approach of {SVM} and {ECOC} for powerful identification and classification of transcription factor}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-282}, doi = {10.1186/1471-2105-9-282}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengQYWXZL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DingSLWFWYL08, author = {Guohui Ding and Yan Sun and Hong Li and Zhen Wang and Haiwei Fan and Chuan Wang and Dan Yang and Yixue Li}, title = {{EPGD:} a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {255--262}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm924}, doi = {10.1093/NAR/GKM924}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/DingSLWFWYL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CuiLLXZLYWYLS08, author = {Jian Cui and Peng Li and Guang Li and Feng Xu and Chen Zhao and Yuhua Li and Zhongnan Yang and Guang Wang and Qingbo Yu and Yi{-}Xue Li and Tieliu Shi}, title = {AtPID: \emph{Arabidopsis thaliana} protein interactome database - an integrative platform for plant systems biology}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {999--1008}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm844}, doi = {10.1093/NAR/GKM844}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CuiLLXZLYWYLS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KangLCLL08, author = {Bin Kang and Yuan{-}Yuan Li and Xiao Chang and Lei Liu and Yi{-}Xue Li}, title = {Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation}, journal = {PLoS Comput. Biol.}, volume = {4}, number = {3}, year = {2008}, url = {https://doi.org/10.1371/journal.pcbi.1000019}, doi = {10.1371/JOURNAL.PCBI.1000019}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/KangLCLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/LiALRST08, author = {Yong Fuga Li and Randy J. Arnold and Yixue Li and Predrag Radivojac and Quanhu Sheng and Haixu Tang}, editor = {Martin Vingron and Limsoon Wong}, title = {A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics}, booktitle = {Research in Computational Molecular Biology, 12th Annual International Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4955}, pages = {167--180}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-78839-3\_15}, doi = {10.1007/978-3-540-78839-3\_15}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/LiALRST08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/QianLLCL07, author = {Ziliang Qian and Lingyi Lu and Xiao{-}Jun Liu and Yu{-}Dong Cai and Yixue Li}, title = {An approach to predict transcription factor {DNA} binding site specificity based upon gene and transcription factor functional categorization}, journal = {Bioinform.}, volume = {23}, number = {18}, pages = {2449--2454}, year = {2007}, url = {https://doi.org/10.1093/bioinformatics/btm348}, doi = {10.1093/BIOINFORMATICS/BTM348}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/QianLLCL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SunSDLWHSLZ07, author = {Jingchun Sun and Yan Sun and Guohui Ding and Qi Liu and Chuan Wang and Youyu He and Tieliu Shi and Yixue Li and Zhongming Zhao}, title = {InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007}, url = {https://doi.org/10.1186/1471-2105-8-414}, doi = {10.1186/1471-2105-8-414}, timestamp = {Wed, 25 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SunSDLWHSLZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuWTXLL07, author = {Hui Yu and Feng Wang and Kang Tu and Lu Xie and Yuan{-}Yuan Li and Yi{-}Xue Li}, title = {Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007}, url = {https://doi.org/10.1186/1471-2105-8-194}, doi = {10.1186/1471-2105-8-194}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuWTXLL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhaoDTYYLCL07, author = {Jing Zhao and Guo{-}Hui Ding and Lin Tao and Hong Yu and Zhong{-}Hao Yu and Jianhua Luo and Zhi{-}Wei Cao and Yi{-}Xue Li}, title = {Modular co-evolution of metabolic networks}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007}, url = {https://doi.org/10.1186/1471-2105-8-311}, doi = {10.1186/1471-2105-8-311}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoDTYYLCL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/LuQCL07, author = {Lingyi Lu and Ziliang Qian and Yu{-}Dong Cai and Yixue Li}, title = {{ECS:} An automatic enzyme classifier based on functional domain composition}, journal = {Comput. Biol. Chem.}, volume = {31}, number = {3}, pages = {226--232}, year = {2007}, url = {https://doi.org/10.1016/j.compbiolchem.2007.03.008}, doi = {10.1016/J.COMPBIOLCHEM.2007.03.008}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/candc/LuQCL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/WangWZCL07, author = {Xiaojing Wang and Wu Wei and Siyuan Zheng and Zhi{-}Wei Cao and Yixue Li}, editor = {Yong Shi and G. Dick van Albada and Jack J. Dongarra and Peter M. A. Sloot}, title = {Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin}, booktitle = {Computational Science - {ICCS} 2007, 7th International Conference, Beijing, China, May 27 - 30, 2007, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {4488}, pages = {363--369}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-72586-2\_52}, doi = {10.1007/978-3-540-72586-2\_52}, timestamp = {Tue, 08 Nov 2022 08:34:34 +0100}, biburl = {https://dblp.org/rec/conf/iccS/WangWZCL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sc/Li07, author = {Yixue Li}, editor = {David K. Kahaner}, title = {Biological data integration and high-performance computing}, booktitle = {{CHINA} {HPC} 2007, Proceedings of the Asian Technology Information Program's (ATIP's) Third Workshop on High-Performance Computing in China: "Solution Approaches to Impediments for High Performance Computing", Supercomputing 2007 (SC07), November 11, 2007, Reno, Nevada, {USA}}, pages = {51--61}, publisher = {{ACM} Press}, year = {2007}, url = {https://doi.org/10.1145/1375783.1375796}, doi = {10.1145/1375783.1375796}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sc/Li07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiQGLXHSSHL06, author = {Yuan{-}Yuan Li and Lei Qin and Zong{-}Ming Guo and Lei Liu and Hao Xu and Pei Hao and Jiong Su and Yixiang Shi and Wei{-}Zhong He and Yi{-}Xue Li}, title = {\emph{In silico }discovery of human natural antisense transcripts}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {18}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-18}, doi = {10.1186/1471-2105-7-18}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiQGLXHSSHL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuWL06, author = {Xiaojing Yu and Chuan Wang and Yixue Li}, title = {Classification of protein quaternary structure by functional domain composition}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {187}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-187}, doi = {10.1186/1471-2105-7-187}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuWL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiaSCL06, author = {Peilin Jia and Tieliu Shi and Yudong Cai and Yixue Li}, title = {Demonstration of two novel methods for predicting functional siRNA efficiency}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {271}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-271}, doi = {10.1186/1471-2105-7-271}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiaSCL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhaoYLCL06, author = {Jing Zhao and Hong Yu and Jianhua Luo and Zhi{-}Wei Cao and Yi{-}Xue Li}, title = {Hierarchical modularity of nested bow-ties in metabolic networks}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {386}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-386}, doi = {10.1186/1471-2105-7-386}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoYLCL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/LiLZCL06, author = {Sujun Li and Boshu Liu and Rong Zeng and Yudong Cai and Yixue Li}, title = {Predicting \emph{O}-glycosylation sites in mammalian proteins by using SVMs}, journal = {Comput. Biol. Chem.}, volume = {30}, number = {3}, pages = {203--208}, year = {2006}, url = {https://doi.org/10.1016/j.compbiolchem.2006.02.002}, doi = {10.1016/J.COMPBIOLCHEM.2006.02.002}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/candc/LiLZCL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/ZhangCLCL06, author = {Guoqing Zhang and Zhi{-}Wei Cao and Qing{-}ming Luo and Yu{-}Dong Cai and Yixue Li}, title = {Operon prediction based on {SVM}}, journal = {Comput. Biol. Chem.}, volume = {30}, number = {3}, pages = {233--240}, year = {2006}, url = {https://doi.org/10.1016/j.compbiolchem.2006.03.002}, doi = {10.1016/J.COMPBIOLCHEM.2006.03.002}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/ZhangCLCL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijprai/ZhaoDWZL06, author = {Xing{-}Ming Zhao and Ji{-}Xiang Du and Hong{-}Qiang Wang and Yunping Zhu and Yixue Li}, title = {A new technique for selecting features from protein sequences}, journal = {Int. J. Pattern Recognit. Artif. Intell.}, volume = {20}, number = {2}, pages = {271--283}, year = {2006}, url = {https://doi.org/10.1142/S021800140600465X}, doi = {10.1142/S021800140600465X}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijprai/ZhaoDWZL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijprai/ZhengCLLZ06, author = {Chun{-}Hou Zheng and Yan Chen and Xiu{-}Xia Li and Yi{-}Xue Li and Yunping Zhu}, title = {Tumor classification based on independent component analysis}, journal = {Int. J. Pattern Recognit. Artif. Intell.}, volume = {20}, number = {2}, pages = {297--310}, year = {2006}, url = {https://doi.org/10.1142/S0218001406004673}, doi = {10.1142/S0218001406004673}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijprai/ZhengCLLZ06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/FangYLLL06, author = {Zhuo Fang and Jiong Yang and Yixue Li and Qing{-}ming Luo and Lei Liu}, title = {Knowledge guided analysis of microarray data}, journal = {J. Biomed. Informatics}, volume = {39}, number = {4}, pages = {401--411}, year = {2006}, url = {https://doi.org/10.1016/j.jbi.2005.08.004}, doi = {10.1016/J.JBI.2005.08.004}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbi/FangYLLL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/LuHCHLLGL06, author = {Qiang Lu and Pei Hao and Vasa Curcin and Wei{-}Zhong He and Yuan{-}Yuan Li and Qing{-}ming Luo and Yike Guo and Yi{-}Xue Li}, title = {{KDE} Bioscience: Platform for bioinformatics analysis workflows}, journal = {J. Biomed. Informatics}, volume = {39}, number = {4}, pages = {440--450}, year = {2006}, url = {https://doi.org/10.1016/j.jbi.2005.09.001}, doi = {10.1016/J.JBI.2005.09.001}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbi/LuHCHLLGL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiYGGTL06, author = {Yuan{-}Yuan Li and Hui Yu and Zong{-}Ming Guo and Ting{-}Qing Guo and Kang Tu and Yi{-}Xue Li}, title = {Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance}, journal = {PLoS Comput. Biol.}, volume = {2}, number = {7}, year = {2006}, url = {https://doi.org/10.1371/journal.pcbi.0020074}, doi = {10.1371/JOURNAL.PCBI.0020074}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LiYGGTL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DingKLSPL06, author = {Guohui Ding and Jiuhong Kang and Qi Liu and Tieliu Shi and Gang Pei and Yixue Li}, title = {Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families}, journal = {PLoS Comput. Biol.}, volume = {2}, number = {8}, year = {2006}, url = {https://doi.org/10.1371/journal.pcbi.0020102}, doi = {10.1371/JOURNAL.PCBI.0020102}, timestamp = {Wed, 25 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/DingKLSPL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiYGGTL06a, author = {Yuan{-}Yuan Li and Hui Yu and Zong{-}Ming Guo and Ting{-}Qing Guo and Kang Tu and Yi{-}Xue Li}, title = {Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance}, journal = {PLoS Comput. Biol.}, volume = {2}, number = {8}, year = {2006}, url = {https://doi.org/10.1371/journal.pcbi.0020112}, doi = {10.1371/JOURNAL.PCBI.0020112}, timestamp = {Thu, 27 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LiYGGTL06a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/apscc/LiXFD06, author = {Yixue Li and Yu Xu and Gengzhong Feng and Wenqiang Dai}, title = {On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic Poisson Default Processes}, booktitle = {Proceedings of The 1st {IEEE} Asia-Pacific Services Computing Conference, {APSCC} 2006, December 12-15, 2006, Guangzhou, China}, pages = {663--666}, publisher = {{IEEE} Computer Society}, year = {2006}, url = {https://doi.org/10.1109/APSCC.2006.73}, doi = {10.1109/APSCC.2006.73}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/apscc/LiXFD06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vdmb/WangZCLL06, author = {Zhuo Wang and Xin{-}Guang Zhu and Yazhu Chen and Yi{-}Xue Li and Lei Liu}, editor = {Mehmet M. Dalkilic and Sun Kim and Jiong Yang}, title = {Comparison of Modularization Methods in Application to Different Biological Networks}, booktitle = {Data Mining and Bioinformatics, First International Workshop, {VDMB} 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {4316}, pages = {185--195}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11960669\_16}, doi = {10.1007/11960669\_16}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/vdmb/WangZCLL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HaoHHMXXWLWLZ05, author = {Pei Hao and Wei{-}Zhong He and Yin Huang and Liang{-}Xiao Ma and Ying Xu and Hong Xi and Chuan Wang and Boshu Liu and Jin{-}Miao Wang and Yi{-}Xue Li and Yang Zhong}, title = {{MPSS:} an integrated database system for surveying a set of proteins}, journal = {Bioinform.}, volume = {21}, number = {9}, pages = {2142--2143}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti306}, doi = {10.1093/BIOINFORMATICS/BTI306}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HaoHHMXXWLWLZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SunXLLZSL05, author = {Jingchun Sun and Jinlin Xu and Zhen Liu and Qi Liu and Aimin Zhao and Tieliu Shi and Yi{-}Xue Li}, title = {Refined phylogenetic profiles method for predicting protein-protein interactions}, journal = {Bioinform.}, volume = {21}, number = {16}, pages = {3409--3415}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti532}, doi = {10.1093/BIOINFORMATICS/BTI532}, timestamp = {Tue, 24 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SunXLLZSL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/prl/ZhangHZL05, author = {Guang{-}Zheng Zhang and De{-}Shuang Huang and Yunping Zhu and Yi{-}Xue Li}, title = {Improving protein secondary structure prediction by using the residue conformational classes}, journal = {Pattern Recognit. Lett.}, volume = {26}, number = {15}, pages = {2346--2352}, year = {2005}, url = {https://doi.org/10.1016/j.patrec.2005.04.010}, doi = {10.1016/J.PATREC.2005.04.010}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/prl/ZhangHZL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/DengLL04, author = {Yong Deng and Qi Liu and Yi{-}Xue Li}, title = {Scoring hidden Markov models to discriminate -barrel membrane proteins}, journal = {Comput. Biol. Chem.}, volume = {28}, number = {3}, pages = {189--194}, year = {2004}, url = {https://doi.org/10.1016/j.compbiolchem.2004.02.004}, doi = {10.1016/J.COMPBIOLCHEM.2004.02.004}, timestamp = {Tue, 24 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/DengLL04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/LiuZWL03, author = {Qi Liu and Yisheng Zhu and Baohua Wang and Yi{-}Xue Li}, title = {A HMM-based method to predict the transmembrane regions of {\textbackslash}beta-barrel membrane proteins}, journal = {Comput. Biol. Chem.}, volume = {27}, number = {1}, pages = {69--76}, year = {2003}, url = {https://doi.org/10.1016/S0097-8485(02)00051-7}, doi = {10.1016/S0097-8485(02)00051-7}, timestamp = {Wed, 25 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/LiuZWL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/LiuZWL03a, author = {Qi Liu and Yisheng Zhu and Baohua Wang and Yi{-}Xue Li}, title = {Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure}, journal = {Comput. Biol. Chem.}, volume = {27}, number = {3}, pages = {355--361}, year = {2003}, url = {https://doi.org/10.1016/S1476-9271(02)00085-3}, doi = {10.1016/S1476-9271(02)00085-3}, timestamp = {Wed, 25 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/LiuZWL03a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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