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BibTeX records: Geert Litjens 0001
@article{DBLP:journals/cbm/FarynaLL24, author = {Khrystyna Faryna and Jeroen van der Laak and Geert Litjens}, title = {Automatic data augmentation to improve generalization of deep learning in H{\&}E stained histopathology}, journal = {Comput. Biol. Medicine}, volume = {170}, pages = {108018}, year = {2024}, url = {https://doi.org/10.1016/j.compbiomed.2024.108018}, doi = {10.1016/J.COMPBIOMED.2024.108018}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/FarynaLL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/LinmansHLL24, author = {Jasper Linmans and Emiel Hoogeboom and Jeroen van der Laak and Geert Litjens}, title = {The Latent Doctor Model for Modeling Inter-Observer Variability}, journal = {{IEEE} J. Biomed. Health Informatics}, volume = {28}, number = {1}, pages = {343--354}, year = {2024}, url = {https://doi.org/10.1109/JBHI.2023.3323582}, doi = {10.1109/JBHI.2023.3323582}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/titb/LinmansHLL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/LinmansELL23, author = {Jasper Linmans and Stefan Elfwing and Jeroen van der Laak and Geert Litjens}, title = {Predictive uncertainty estimation for out-of-distribution detection in digital pathology}, journal = {Medical Image Anal.}, volume = {83}, pages = {102655}, year = {2023}, url = {https://doi.org/10.1016/j.media.2022.102655}, doi = {10.1016/J.MEDIA.2022.102655}, timestamp = {Sat, 13 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/LinmansELL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/BandiBDKGLL23, author = {P{\'{e}}ter B{\'{a}}ndi and Maschenka Balkenhol and Marcory Van Dijk and Michel Kok and Bram van Ginneken and Jeroen van der Laak and Geert Litjens}, title = {Continual learning strategies for cancer-independent detection of lymph node metastases}, journal = {Medical Image Anal.}, volume = {85}, pages = {102755}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102755}, doi = {10.1016/J.MEDIA.2023.102755}, timestamp = {Sat, 13 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/BandiBDKGLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/DooperPAHJLL23, author = {Stephan Dooper and Hans Pinckaers and Witali Aswolinskiy and Konnie M. Hebeda and Sofia Jarkman and Jeroen van der Laak and Geert Litjens}, title = {Gigapixel end-to-end training using streaming and attention}, journal = {Medical Image Anal.}, volume = {88}, pages = {102881}, year = {2023}, url = {https://doi.org/10.1016/j.media.2023.102881}, doi = {10.1016/J.MEDIA.2023.102881}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/DooperPAHJLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2302-01790, author = {Annika Reinke and Minu Tizabi and Michael Baumgartner and Matthias Eisenmann and Doreen Heckmann{-}N{\"{o}}tzel and A. Emre Kavur and Tim R{\"{a}}dsch and Carole H. Sudre and Laura Aci{\'{o}}n and Michela Antonelli and Tal Arbel and Spyridon Bakas and Arriel Benis and Matthew B. Blaschko and Florian B{\"{u}}ttner and M. Jorge Cardoso and Veronika Cheplygina and Jianxu Chen and Evangelia Christodoulou and Beth A. Cimini and Gary S. Collins and Keyvan Farahani and Luciana Ferrer and Adrian Galdran and Bram van Ginneken and Ben Glocker and Patrick Godau and Robert Haase and Daniel A. Hashimoto and Michael M. Hoffman and Merel Huisman and Fabian Isensee and Pierre Jannin and Charles E. Kahn and Dagmar Kainmueller and Bernhard Kainz and Alexandros Karargyris and Alan Karthikesalingam and Hannes Kenngott and Jens Kleesiek and Florian Kofler and Thijs Kooi and Annette Kopp{-}Schneider and Michal Kozubek and Anna Kreshuk and Tahsin M. Kur{\c{c}} and Bennett A. Landman and Geert Litjens and Amin Madani and Klaus H. Maier{-}Hein and Anne L. Martel and Peter Mattson and Erik Meijering and Bjoern H. Menze and Karel G. M. Moons and Henning M{\"{u}}ller and Brennan Nichyporuk and Felix Nickel and Jens Petersen and Susanne M. Rafelski and Nasir M. Rajpoot and Mauricio Reyes and Michael A. Riegler and Nicola Rieke and Julio Saez{-}Rodriguez and Clara I. S{\'{a}}nchez and Shravya Shetty and Maarten van Smeden and Ronald M. Summers and Abdel A. Taha and Aleksei Tiulpin and Sotirios A. Tsaftaris and Ben Van Calster and Ga{\"{e}}l Varoquaux and Manuel Wiesenfarth and Ziv R. Yaniv and Paul F. J{\"{a}}ger and Lena Maier{-}Hein}, title = {Understanding metric-related pitfalls in image analysis validation}, journal = {CoRR}, volume = {abs/2302.01790}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2302.01790}, doi = {10.48550/ARXIV.2302.01790}, eprinttype = {arXiv}, eprint = {2302.01790}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2302-01790.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2312-12619, author = {Cl{\'{e}}ment Grisi and Geert Litjens and Jeroen van der Laak}, title = {Hierarchical Vision Transformers for Context-Aware Prostate Cancer Grading in Whole Slide Images}, journal = {CoRR}, volume = {abs/2312.12619}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2312.12619}, doi = {10.48550/ARXIV.2312.12619}, eprinttype = {arXiv}, eprint = {2312.12619}, timestamp = {Wed, 17 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2312-12619.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/AdamsMERBANVGLB22, author = {Lisa C. Adams and Marcus R. Makowski and G{\"{u}}nther Engel and Maximilian Rattunde and Felix Busch and Patrick Asbach and Stefan Markus Niehues and Shankeeth Vinayahalingam and Bram van Ginneken and Geert Litjens and Keno K. Bressem}, title = {Prostate158 - An expert-annotated 3T {MRI} dataset and algorithm for prostate cancer detection}, journal = {Comput. Biol. Medicine}, volume = {148}, pages = {105817}, year = {2022}, url = {https://doi.org/10.1016/j.compbiomed.2022.105817}, doi = {10.1016/J.COMPBIOMED.2022.105817}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/AdamsMERBANVGLB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pami/PinckaersGL22, author = {Hans Pinckaers and Bram van Ginneken and Geert Litjens}, title = {Streaming Convolutional Neural Networks for End-to-End Learning With Multi-Megapixel Images}, journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.}, volume = {44}, number = {3}, pages = {1581--1590}, year = {2022}, url = {https://doi.org/10.1109/TPAMI.2020.3019563}, doi = {10.1109/TPAMI.2020.3019563}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pami/PinckaersGL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2206-01653, author = {Lena Maier{-}Hein and Annika Reinke and Evangelia Christodoulou and Ben Glocker and Patrick Godau and Fabian Isensee and Jens Kleesiek and Michal Kozubek and Mauricio Reyes and Michael A. Riegler and Manuel Wiesenfarth and Michael Baumgartner and Matthias Eisenmann and Doreen Heckmann{-}N{\"{o}}tzel and A. Emre Kavur and Tim R{\"{a}}dsch and Minu Dietlinde Tizabi and Laura Aci{\'{o}}n and Michela Antonelli and Tal Arbel and Spyridon Bakas and Peter Bankhead and Arriel Benis and M. Jorge Cardoso and Veronika Cheplygina and Beth A. Cimini and Gary S. Collins and Keyvan Farahani and Bram van Ginneken and Daniel A. Hashimoto and Michael M. Hoffman and Merel Huisman and Pierre Jannin and Charles E. Kahn and Alexandros Karargyris and Alan Karthikesalingam and Hannes Kenngott and Annette Kopp{-}Schneider and Anna Kreshuk and Tahsin M. Kur{\c{c}} and Bennett A. Landman and Geert Litjens and Amin Madani and Klaus H. Maier{-}Hein and Anne L. Martel and Peter Mattson and Erik Meijering and Bjoern H. Menze and David Moher and Karel G. M. Moons and Henning M{\"{u}}ller and Felix Nickel and Brennan Nichyporuk and Jens Petersen and Nasir M. Rajpoot and Nicola Rieke and Julio Saez{-}Rodriguez and Clarisa S{\'{a}}nchez Guti{\'{e}}rrez and Shravya Shetty and Maarten van Smeden and Carole H. Sudre and Ronald M. Summers and Abdel A. Taha and Sotirios A. Tsaftaris and Ben Van Calster and Ga{\"{e}}l Varoquaux and Paul F. J{\"{a}}ger}, title = {Metrics reloaded: Pitfalls and recommendations for image analysis validation}, journal = {CoRR}, volume = {abs/2206.01653}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2206.01653}, doi = {10.48550/ARXIV.2206.01653}, eprinttype = {arXiv}, eprint = {2206.01653}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2206-01653.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-06193, author = {P{\'{e}}ter B{\'{a}}ndi and Maschenka Balkenhol and Marcory Van Dijk and Bram van Ginneken and Jeroen van der Laak and Geert Litjens}, title = {Domain adaptation strategies for cancer-independent detection of lymph node metastases}, journal = {CoRR}, volume = {abs/2207.06193}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.06193}, doi = {10.48550/ARXIV.2207.06193}, eprinttype = {arXiv}, eprint = {2207.06193}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-06193.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/BelBL021, author = {Thomas de Bel and John{-}Melle Bokhorst and Jeroen van der Laak and Geert Litjens}, title = {Residual cyclegan for robust domain transformation of histopathological tissue slides}, journal = {Medical Image Anal.}, volume = {70}, pages = {102004}, year = {2021}, url = {https://doi.org/10.1016/j.media.2021.102004}, doi = {10.1016/J.MEDIA.2021.102004}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/BelBL021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pami/TellezLLC21, author = {David Tellez and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, title = {Neural Image Compression for Gigapixel Histopathology Image Analysis}, journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.}, volume = {43}, number = {2}, pages = {567--578}, year = {2021}, url = {https://doi.org/10.1109/TPAMI.2019.2936841}, doi = {10.1109/TPAMI.2019.2936841}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pami/TellezLLC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/LiZTTSZLXLLZSZY21, author = {Zhang Li and Jiehua Zhang and Tao Tan and Xichao Teng and Xiaoliang Sun and Hong Zhao and Lihong Liu and Yang Xiao and Byungjae Lee and Yilong Li and Qianni Zhang and Shujiao Sun and Yushan Zheng and Junyu Yan and Ni Li and Yiyu Hong and Junsu Ko and Hyun Jung and Yanling Liu and Yu{-}cheng Chen and Ching{-}Wei Wang and Vladimir Yurovskiy and Pavel Maevskikh and Vahid Khanagha and Yi Jiang and Li Yu and Zhihong Liu and Daiqiang Li and Peter J. Sch{\"{u}}ffler and Qifeng Yu and Hui Chen and Yuling Tang and Geert Litjens}, title = {Deep Learning Methods for Lung Cancer Segmentation in Whole-Slide Histopathology Images - The ACDC@LungHP Challenge 2019}, journal = {{IEEE} J. Biomed. Health Informatics}, volume = {25}, number = {2}, pages = {429--440}, year = {2021}, url = {https://doi.org/10.1109/JBHI.2020.3039741}, doi = {10.1109/JBHI.2020.3039741}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/titb/LiZTTSZLXLLZSZY21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/PinckaersBLL21, author = {Hans Pinckaers and Wouter Bulten and Jeroen van der Laak and Geert Litjens}, title = {Detection of Prostate Cancer in Whole-Slide Images Through End-to-End Training With Image-Level Labels}, journal = {{IEEE} Trans. Medical Imaging}, volume = {40}, number = {7}, pages = {1817--1826}, year = {2021}, url = {https://doi.org/10.1109/TMI.2021.3066295}, doi = {10.1109/TMI.2021.3066295}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/PinckaersBLL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/FarynaL021, author = {Khrystyna Faryna and Jeroen van der Laak and Geert Litjens}, editor = {Mattias P. Heinrich and Qi Dou and Marleen de Bruijne and Jan Lellmann and Alexander Schlaefer and Floris Ernst}, title = {Tailoring automated data augmentation to H{\&}E-stained histopathology}, booktitle = {Medical Imaging with Deep Learning, 7-9 July 2021, L{\"{u}}beck, Germany}, series = {Proceedings of Machine Learning Research}, volume = {143}, pages = {168--178}, publisher = {{PMLR}}, year = {2021}, url = {https://proceedings.mlr.press/v143/faryna21a.html}, timestamp = {Tue, 13 Dec 2022 14:39:07 +0100}, biburl = {https://dblp.org/rec/conf/midl/FarynaL021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/GeijsPAL21, author = {Daan J. Geijs and Hans Pinckaers and Avital L. Amir and Geert J. S. Litjens}, editor = {John E. Tomaszewski and Aaron D. Ward}, title = {End-to-end classification on basal-cell carcinoma histopathology whole-slides images}, booktitle = {Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021}, series = {{SPIE} Proceedings}, volume = {11603}, publisher = {{SPIE}}, year = {2021}, url = {https://doi.org/10.1117/12.2581042}, doi = {10.1117/12.2581042}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/GeijsPAL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2104-05642, author = {Annika Reinke and Matthias Eisenmann and Minu Dietlinde Tizabi and Carole H. Sudre and Tim R{\"{a}}dsch and Michela Antonelli and Tal Arbel and Spyridon Bakas and M. Jorge Cardoso and Veronika Cheplygina and Keyvan Farahani and Ben Glocker and Doreen Heckmann{-}N{\"{o}}tzel and Fabian Isensee and Pierre Jannin and Charles E. Kahn and Jens Kleesiek and Tahsin M. Kur{\c{c}} and Michal Kozubek and Bennett A. Landman and Geert Litjens and Klaus H. Maier{-}Hein and Bjoern H. Menze and Henning M{\"{u}}ller and Jens Petersen and Mauricio Reyes and Nicola Rieke and Bram Stieltjes and Ronald M. Summers and Sotirios A. Tsaftaris and Bram van Ginneken and Annette Kopp{-}Schneider and Paul J{\"{a}}ger and Lena Maier{-}Hein}, title = {Common Limitations of Image Processing Metrics: {A} Picture Story}, journal = {CoRR}, volume = {abs/2104.05642}, year = {2021}, url = {https://arxiv.org/abs/2104.05642}, eprinttype = {arXiv}, eprint = {2104.05642}, timestamp = {Fri, 04 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2104-05642.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2106-05735, author = {Michela Antonelli and Annika Reinke and Spyridon Bakas and Keyvan Farahani and Annette Kopp{-}Schneider and Bennett A. Landman and Geert Litjens and Bjoern H. Menze and Olaf Ronneberger and Ronald M. Summers and Bram van Ginneken and Michel Bilello and Patrick Bilic and Patrick Ferdinand Christ and Richard K. G. Do and Marc Gollub and Stephan Heckers and Henkjan J. Huisman and William R. Jarnagin and Maureen McHugo and Sandy Napel and Jennifer Goli{-}Pernicka and Kawal S. Rhode and Catalina Tobon{-}Gomez and Eugene Vorontsov and James A. Meakin and S{\'{e}}bastien Ourselin and Manuel Wiesenfarth and Pablo Arbel{\'{a}}ez and Byeonguk Bae and Sihong Chen and Laura Alexandra Daza and Jianjiang Feng and Baochun He and Fabian Isensee and Yuanfeng Ji and Fucang Jia and Namkug Kim and Ildoo Kim and Dorit Merhof and Akshay Pai and BeomHee Park and Mathias Perslev and Ramin Rezaiifar and Oliver Rippel and Ignacio Sarasua and Wei Shen and Jaemin Son and Christian Wachinger and Liansheng Wang and Yan Wang and Yingda Xia and Daguang Xu and Zhanwei Xu and Yefeng Zheng and Amber L. Simpson and Lena Maier{-}Hein and M. Jorge Cardoso}, title = {The Medical Segmentation Decathlon}, journal = {CoRR}, volume = {abs/2106.05735}, year = {2021}, url = {https://arxiv.org/abs/2106.05735}, eprinttype = {arXiv}, eprint = {2106.05735}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2106-05735.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2112-01533, author = {Pierpaolo Vendittelli and Esther M. M. Smeets and Geert Litjens}, title = {Automatic tumour segmentation in H{\&}E-stained whole-slide images of the pancreas}, journal = {CoRR}, volume = {abs/2112.01533}, year = {2021}, url = {https://arxiv.org/abs/2112.01533}, eprinttype = {arXiv}, eprint = {2112.01533}, timestamp = {Fri, 10 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2112-01533.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/LinmansL020, author = {Jasper Linmans and Jeroen van der Laak and Geert Litjens}, editor = {Tal Arbel and Ismail Ben Ayed and Marleen de Bruijne and Maxime Descoteaux and Herv{\'{e}} Lombaert and Christopher Pal}, title = {Efficient Out-of-Distribution Detection in Digital Pathology Using Multi-Head Convolutional Neural Networks}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada}, series = {Proceedings of Machine Learning Research}, volume = {121}, pages = {465--478}, publisher = {{PMLR}}, year = {2020}, url = {http://proceedings.mlr.press/v121/linmans20a.html}, timestamp = {Fri, 27 Nov 2020 12:58:38 +0100}, biburl = {https://dblp.org/rec/conf/midl/LinmansL020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/EekelenPHL20, author = {Leander van Eekelen and Hans Pinckaers and Konnie M. Hebeda and Geert Litjens}, editor = {John E. Tomaszewski and Aaron D. Ward}, title = {Multi-class semantic cell segmentation and classification of aplasia in bone marrow histology images}, booktitle = {Medical Imaging 2020: Digital Pathology, Houston, TX, USA, February 15-20, 2020}, series = {{SPIE} Proceedings}, volume = {11320}, pages = {113200B}, publisher = {{SPIE}}, year = {2020}, url = {https://doi.org/10.1117/12.2549654}, doi = {10.1117/12.2549654}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midp/EekelenPHL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/Swiderska-Chadaj20a, author = {Zaneta Swiderska{-}Chadaj and Konnie M. Hebeda and Michiel van den Brand and Geert Litjens}, editor = {John E. Tomaszewski and Aaron D. Ward}, title = {Predicting {MYC} translocation in {HE} specimens of diffuse large B-cell lymphoma through deep learning}, booktitle = {Medical Imaging 2020: Digital Pathology, Houston, TX, USA, February 15-20, 2020}, series = {{SPIE} Proceedings}, volume = {11320}, pages = {1132010}, publisher = {{SPIE}}, year = {2020}, url = {https://doi.org/10.1117/12.2549650}, doi = {10.1117/12.2549650}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midp/Swiderska-Chadaj20a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2002-04500, author = {Wouter Bulten and Maschenka Balkenhol and Jean{-}Jo{\"{e}}l Awoumou Belinga and Am{\'{e}}rico Brilhante and Asli {\c{C}}akir and Xavier Farr{\'{e}} and Katerina Geronatsiou and Vincent Molini{\'{e}} and Guilherme Pereira and Paromita Roy and G{\"{u}}nter Saile and Paulo Salles and Ewout Schaafsma and Jo{\"{e}}lle Tschui and Anne{-}Marie Vos and Hester van Boven and Robert Vink and Jeroen van der Laak and Christina A. Hulsbergen van de Kaa and Geert Litjens}, title = {Artificial Intelligence Assistance Significantly Improves Gleason Grading of Prostate Biopsies by Pathologists}, journal = {CoRR}, volume = {abs/2002.04500}, year = {2020}, url = {https://arxiv.org/abs/2002.04500}, eprinttype = {arXiv}, eprint = {2002.04500}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2002-04500.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-03394, author = {Hans Pinckaers and Wouter Bulten and Jeroen van der Laak and Geert Litjens}, title = {Detection of prostate cancer in whole-slide images through end-to-end training with image-level labels}, journal = {CoRR}, volume = {abs/2006.03394}, year = {2020}, url = {https://arxiv.org/abs/2006.03394}, eprinttype = {arXiv}, eprint = {2006.03394}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-03394.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2008-09352, author = {Zhang Li and Jiehua Zhang and Tao Tan and Xichao Teng and Xiaoliang Sun and Yang Li and Lihong Liu and Yang Xiao and Byungjae Lee and Yilong Li and Qianni Zhang and Shujiao Sun and Yushan Zheng and Junyu Yan and Ni Li and Yiyu Hong and Junsu Ko and Hyun Jung and Yanling Liu and Yu{-}cheng Chen and Ching{-}Wei Wang and Vladimir Yurovskiy and Pavel Maevskikh and Vahid Khanagha and Yi Jiang and Xiangjun Feng and Zhihong Liu and Daiqiang Li and Peter J. Sch{\"{u}}ffler and Qifeng Yu and Hui Chen and Yuling Tang and Geert Litjens}, title = {Deep Learning Methods for Lung Cancer Segmentation in Whole-slide Histopathology Images - the ACDC@LungHP Challenge 2019}, journal = {CoRR}, volume = {abs/2008.09352}, year = {2020}, url = {https://arxiv.org/abs/2008.09352}, eprinttype = {arXiv}, eprint = {2008.09352}, timestamp = {Thu, 29 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2008-09352.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/Swiderska-Chadaj19, author = {Zaneta Swiderska{-}Chadaj and Hans Pinckaers and Mart van Rijthoven and Maschenka Balkenhol and Margarita Melnikova and Oscar Geessink and Quirine Manson and Mark Sherman and Ant{\'{o}}nio Pol{\'{o}}nia and Jeremy Parry and Mustapha Abubakar and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, title = {Learning to detect lymphocytes in immunohistochemistry with deep learning}, journal = {Medical Image Anal.}, volume = {58}, year = {2019}, url = {https://doi.org/10.1016/j.media.2019.101547}, doi = {10.1016/J.MEDIA.2019.101547}, timestamp = {Thu, 28 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/Swiderska-Chadaj19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/TellezLBBBCL19, author = {David Tellez and Geert Litjens and P{\'{e}}ter B{\'{a}}ndi and Wouter Bulten and John{-}Melle Bokhorst and Francesco Ciompi and Jeroen van der Laak}, title = {Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology}, journal = {Medical Image Anal.}, volume = {58}, year = {2019}, url = {https://doi.org/10.1016/j.media.2019.101544}, doi = {10.1016/J.MEDIA.2019.101544}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/TellezLBBBCL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/BandiGMDBHBLPZL19, author = {P{\'{e}}ter B{\'{a}}ndi and Oscar Geessink and Quirine Manson and Marcory Van Dijk and Maschenka Balkenhol and Meyke Hermsen and Babak Ehteshami Bejnordi and Byungjae Lee and Kyunghyun Paeng and Aoxiao Zhong and Quanzheng Li and Farhad Ghazvinian Zanjani and Svitlana Zinger and Keisuke Fukuta and Daisuke Komura and Vlado Ovtcharov and Shenghua Cheng and Shaoqun Zeng and Jeppe Thagaard and Anders B. Dahl and Huangjing Lin and Hao Chen and Ludwig Jacobsson and Martin Hedlund and Melih {\c{C}}etin and Eren Halici and Hunter Jackson and Richard Chen and Fabian Both and J{\"{o}}rg Franke and Heidi K{\"{u}}sters{-}Vandevelde and Willem Vreuls and Peter Bult and Bram van Ginneken and Jeroen van der Laak and Geert Litjens}, title = {From Detection of Individual Metastases to Classification of Lymph Node Status at the Patient Level: The {CAMELYON17} Challenge}, journal = {{IEEE} Trans. Medical Imaging}, volume = {38}, number = {2}, pages = {550--560}, year = {2019}, url = {https://doi.org/10.1109/TMI.2018.2867350}, doi = {10.1109/TMI.2018.2867350}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/BandiGMDBHBLPZL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/BelHKLL19, author = {Thomas de Bel and Meyke Hermsen and Jesper Kers and Jeroen van der Laak and Geert Litjens}, editor = {M. Jorge Cardoso and Aasa Feragen and Ben Glocker and Ender Konukoglu and Ipek Oguz and Gozde B. Unal and Tom Vercauteren}, title = {Stain-Transforming Cycle-Consistent Generative Adversarial Networks for Improved Segmentation of Renal Histopathology}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2019, 8-10 July 2019, London, United Kingdom}, series = {Proceedings of Machine Learning Research}, volume = {102}, pages = {151--163}, publisher = {{PMLR}}, year = {2019}, url = {http://proceedings.mlr.press/v102/de-bel19a.html}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midl/BelHKLL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/PinckaersBL19, author = {Hans Pinckaers and Wouter Bulten and Geert Litjens}, editor = {John E. Tomaszewski and Aaron D. Ward}, title = {High resolution whole prostate biopsy classification using streaming stochastic gradient descent}, booktitle = {Medical Imaging 2019: Digital Pathology, San Diego, California, United States, 16-21 February 2019}, series = {{SPIE} Proceedings}, volume = {10956}, pages = {109560A}, publisher = {{SPIE}}, year = {2019}, url = {https://doi.org/10.1117/12.2512817}, doi = {10.1117/12.2512817}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midp/PinckaersBL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1902-06543, author = {David Tellez and Geert Litjens and P{\'{e}}ter B{\'{a}}ndi and Wouter Bulten and John{-}Melle Bokhorst and Francesco Ciompi and Jeroen van der Laak}, title = {Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology}, journal = {CoRR}, volume = {abs/1902.06543}, year = {2019}, url = {http://arxiv.org/abs/1902.06543}, eprinttype = {arXiv}, eprint = {1902.06543}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1902-06543.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1902-09063, author = {Amber L. Simpson and Michela Antonelli and Spyridon Bakas and Michel Bilello and Keyvan Farahani and Bram van Ginneken and Annette Kopp{-}Schneider and Bennett A. Landman and Geert Litjens and Bjoern H. Menze and Olaf Ronneberger and Ronald M. Summers and Patrick Bilic and Patrick Ferdinand Christ and Richard K. G. Do and Marc Gollub and Jennifer Golia{-}Pernicka and Stephan Heckers and William R. Jarnagin and Maureen McHugo and Sandy Napel and Eugene Vorontsov and Lena Maier{-}Hein and M. Jorge Cardoso}, title = {A large annotated medical image dataset for the development and evaluation of segmentation algorithms}, journal = {CoRR}, volume = {abs/1902.09063}, year = {2019}, url = {http://arxiv.org/abs/1902.09063}, eprinttype = {arXiv}, eprint = {1902.09063}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1902-09063.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1905-06820, author = {Koen Dercksen and Wouter Bulten and Geert Litjens}, title = {Dealing with Label Scarcity in Computational Pathology: {A} Use Case in Prostate Cancer Classification}, journal = {CoRR}, volume = {abs/1905.06820}, year = {2019}, url = {http://arxiv.org/abs/1905.06820}, eprinttype = {arXiv}, eprint = {1905.06820}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1905-06820.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1907-07980, author = {Wouter Bulten and Hans Pinckaers and Hester van Boven and Robert Vink and Thomas de Bel and Bram van Ginneken and Jeroen van der Laak and Christina A. Hulsbergen van de Kaa and Geert Litjens}, title = {Automated Gleason Grading of Prostate Biopsies using Deep Learning}, journal = {CoRR}, volume = {abs/1907.07980}, year = {2019}, url = {http://arxiv.org/abs/1907.07980}, eprinttype = {arXiv}, eprint = {1907.07980}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1907-07980.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1910-10470, author = {Hans Pinckaers and Geert Litjens}, title = {Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands}, journal = {CoRR}, volume = {abs/1910.10470}, year = {2019}, url = {http://arxiv.org/abs/1910.10470}, eprinttype = {arXiv}, eprint = {1910.10470}, timestamp = {Sat, 23 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1910-10470.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1911-04432, author = {Hans Pinckaers and Bram van Ginneken and Geert Litjens}, title = {Streaming convolutional neural networks for end-to-end learning with multi-megapixel images}, journal = {CoRR}, volume = {abs/1911.04432}, year = {2019}, url = {http://arxiv.org/abs/1911.04432}, eprinttype = {arXiv}, eprint = {1911.04432}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1911-04432.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/TellezBOLVBWVMK18, author = {David Tellez and Maschenka Balkenhol and Irene Otte{-}H{\"{o}}ller and Rob van de Loo and Rob Vogels and Peter Bult and Carla Wauters and Willem Vreuls and Suzanne Mol and Nico Karssemeijer and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, title = {Whole-Slide Mitosis Detection in H{\&}E Breast Histology Using {PHH3} as a Reference to Train Distilled Stain-Invariant Convolutional Networks}, journal = {{IEEE} Trans. Medical Imaging}, volume = {37}, number = {9}, pages = {2126--2136}, year = {2018}, url = {https://doi.org/10.1109/TMI.2018.2820199}, doi = {10.1109/TMI.2018.2820199}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tmi/TellezBOLVBWVMK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/BelHLL18, author = {Thomas de Bel and Meyke Hermsen and Geert Litjens and Jeroen van der Laak}, editor = {Danail Stoyanov and Zeike Taylor and Francesco Ciompi and Yanwu Xu and Anne L. Martel and Lena Maier{-}Hein and Nasir M. Rajpoot and Jeroen van der Laak and Mitko Veta and Stephen J. McKenna and David R. J. Snead and Emanuele Trucco and Mona Kathryn Garvin and Xin Jan Chen and Hrvoje Bogunovic}, title = {Structure Instance Segmentation in Renal Tissue: {A} Case Study on Tubular Immune Cell Detection}, booktitle = {Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, {COMPAY} 2018, and 5th International Workshop, {OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16-20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11039}, pages = {112--119}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00949-6\_14}, doi = {10.1007/978-3-030-00949-6\_14}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/BelHLL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/BultenKLL18, author = {Wouter Bulten and Christina A. Hulsbergen van de Kaa and Jeroen van der Laak and Geert J. S. Litjens}, editor = {John E. Tomaszewski and Metin N. Gurcan}, title = {Automated segmentation of epithelial tissue in prostatectomy slides using deep learning}, booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States, 10-15 February 2018}, series = {{SPIE} Proceedings}, volume = {10581}, pages = {105810S}, publisher = {{SPIE}}, year = {2018}, url = {https://doi.org/10.1117/12.2292872}, doi = {10.1117/12.2292872}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/BultenKLL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/GeijsILL18, author = {Daan J. Geijs and Milad Intezar and Jeroen A. W. M. van der Laak and Geert J. S. Litjens}, editor = {John E. Tomaszewski and Metin N. Gurcan}, title = {Automatic color unmixing of {IHC} stained whole slide images}, booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States, 10-15 February 2018}, series = {{SPIE} Proceedings}, volume = {10581}, pages = {105810L}, publisher = {{SPIE}}, year = {2018}, url = {https://doi.org/10.1117/12.2293734}, doi = {10.1117/12.2293734}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/GeijsILL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/TellezBKLLC18, author = {David Tellez and Maschenka Balkenhol and Nico Karssemeijer and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, editor = {John E. Tomaszewski and Metin N. Gurcan}, title = {H{\&}E stain augmentation improves generalization of convolutional networks for histopathological mitosis detection}, booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States, 10-15 February 2018}, series = {{SPIE} Proceedings}, volume = {10581}, pages = {105810Z}, publisher = {{SPIE}}, year = {2018}, url = {https://doi.org/10.1117/12.2293048}, doi = {10.1117/12.2293048}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/TellezBKLLC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/BelHSHLL18, author = {Thomas de Bel and Meyke Hermsen and Bart Smeets and Luuk Hilbrands and Jeroen van der Laak and Geert Litjens}, editor = {John E. Tomaszewski and Metin N. Gurcan}, title = {Automatic segmentation of histopathological slides of renal tissue using deep learning}, booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States, 10-15 February 2018}, series = {{SPIE} Proceedings}, volume = {10581}, pages = {1058112}, publisher = {{SPIE}}, year = {2018}, url = {https://doi.org/10.1117/12.2293717}, doi = {10.1117/12.2293717}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/BelHSHLL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1803-05471, author = {Zhang Li and Zheyu Hu and Jiaolong Xu and Tao Tan and Hui Chen and Zhi Duan and Ping Liu and Jun Tang and Guoping Cai and Quchang Ouyang and Yuling Tang and Geert Litjens and Qiang Li}, title = {Computer-aided diagnosis of lung carcinoma using deep learning - a pilot study}, journal = {CoRR}, volume = {abs/1803.05471}, year = {2018}, url = {http://arxiv.org/abs/1803.05471}, eprinttype = {arXiv}, eprint = {1803.05471}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1803-05471.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1804-05712, author = {Hans Pinckaers and Geert J. S. Litjens}, title = {Training convolutional neural networks with megapixel images}, journal = {CoRR}, volume = {abs/1804.05712}, year = {2018}, url = {http://arxiv.org/abs/1804.05712}, eprinttype = {arXiv}, eprint = {1804.05712}, timestamp = {Thu, 18 Apr 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1804-05712.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1804-07098, author = {Wouter Bulten and Geert Litjens}, title = {Unsupervised Prostate Cancer Detection on H{\&}E using Convolutional Adversarial Autoencoders}, journal = {CoRR}, volume = {abs/1804.07098}, year = {2018}, url = {http://arxiv.org/abs/1804.07098}, eprinttype = {arXiv}, eprint = {1804.07098}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1804-07098.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1808-05883, author = {Wouter Bulten and P{\'{e}}ter B{\'{a}}ndi and Jeffrey Hoven and Rob van de Loo and Johannes Lotz and Nick Weiss and Jeroen van der Laak and Bram van Ginneken and Christina A. Hulsbergen van de Kaa and Geert Litjens}, title = {Epithelium segmentation using deep learning in H{\&}E-stained prostate specimens with immunohistochemistry as reference standard}, journal = {CoRR}, volume = {abs/1808.05883}, year = {2018}, url = {http://arxiv.org/abs/1808.05883}, eprinttype = {arXiv}, eprint = {1808.05883}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1808-05883.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1808-05896, author = {David Tellez and Maschenka Balkenhol and Irene Otte{-}H{\"{o}}ller and Rob van de Loo and Rob Vogels and Peter Bult and Carla Wauters and Willem Vreuls and Suzanne Mol and Nico Karssemeijer and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, title = {Whole-Slide Mitosis Detection in H{\&}E Breast Histology Using {PHH3} as a Reference to Train Distilled Stain-Invariant Convolutional Networks}, journal = {CoRR}, volume = {abs/1808.05896}, year = {2018}, url = {http://arxiv.org/abs/1808.05896}, eprinttype = {arXiv}, eprint = {1808.05896}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1808-05896.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1811-02840, author = {David Tellez and Geert Litjens and Jeroen van der Laak and Francesco Ciompi}, title = {Neural Image Compression for Gigapixel Histopathology Image Analysis}, journal = {CoRR}, volume = {abs/1811.02840}, year = {2018}, url = {http://arxiv.org/abs/1811.02840}, eprinttype = {arXiv}, eprint = {1811.02840}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1811-02840.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cars/SteensBWLVMBLFK17, author = {Stefan C. A. Steens and Elise M. Bekers and Willem L. J. Weijs and Geert J. S. Litjens and Andor Veltien and Arie Maat and Guido B. van den Broek and Jeroen A. W. M. van der Laak and Jurgen J. F{\"{u}}tterer and Christina A. Hulsbergen van de Kaa and Matthias A. W. Merkx and Robert P. Takes}, title = {Evaluation of tongue squamous cell carcinoma resection margins using ex-vivo {MR}}, journal = {Int. J. Comput. Assist. Radiol. Surg.}, volume = {12}, number = {5}, pages = {821--828}, year = {2017}, url = {https://doi.org/10.1007/s11548-017-1524-6}, doi = {10.1007/S11548-017-1524-6}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cars/SteensBWLVMBLFK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/KooiLGGSMHK17, author = {Thijs Kooi and Geert Litjens and Bram van Ginneken and Albert Gubern{-}M{\'{e}}rida and Clara I. S{\'{a}}nchez and Ritse Mann and Ard den Heeten and Nico Karssemeijer}, title = {Large scale deep learning for computer aided detection of mammographic lesions}, journal = {Medical Image Anal.}, volume = {35}, pages = {303--312}, year = {2017}, url = {https://doi.org/10.1016/j.media.2016.07.007}, doi = {10.1016/J.MEDIA.2016.07.007}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/KooiLGGSMHK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/LitjensKBSCGLGS17, author = {Geert Litjens and Thijs Kooi and Babak Ehteshami Bejnordi and Arnaud Arindra Adiyoso Setio and Francesco Ciompi and Mohsen Ghafoorian and Jeroen A. W. M. van der Laak and Bram van Ginneken and Clara I. S{\'{a}}nchez}, title = {A survey on deep learning in medical image analysis}, journal = {Medical Image Anal.}, volume = {42}, pages = {60--88}, year = {2017}, url = {https://doi.org/10.1016/j.media.2017.07.005}, doi = {10.1016/J.MEDIA.2017.07.005}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/LitjensKBSCGLGS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/CiompiGBSBLGNL17, author = {Francesco Ciompi and Oscar Geessink and Babak Ehteshami Bejnordi and Gabriel Silva de Souza and Alexi Baidoshvili and Geert Litjens and Bram van Ginneken and Iris Nagtegaal and Jeroen van der Laak}, title = {The importance of stain normalization in colorectal tissue classification with convolutional networks}, booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2017, Melbourne, Australia, April 18-21, 2017}, pages = {160--163}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/ISBI.2017.7950492}, doi = {10.1109/ISBI.2017.7950492}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/CiompiGBSBLGNL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/BandiLIGCGLL17, author = {P{\'{e}}ter B{\'{a}}ndi and Rob van de Loo and Milad Intezar and Daan Geijs and Francesco Ciompi and Bram van Ginneken and Jeroen van der Laak and Geert Litjens}, title = {Comparison of different methods for tissue segmentation in histopathological whole-slide images}, booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2017, Melbourne, Australia, April 18-21, 2017}, pages = {591--595}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/ISBI.2017.7950590}, doi = {10.1109/ISBI.2017.7950590}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/BandiLIGCGLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/LitjensKBSCGLGS17, author = {Geert Litjens and Thijs Kooi and Babak Ehteshami Bejnordi and Arnaud Arindra Adiyoso Setio and Francesco Ciompi and Mohsen Ghafoorian and Jeroen A. W. M. van der Laak and Bram van Ginneken and Clara I. S{\'{a}}nchez}, title = {A Survey on Deep Learning in Medical Image Analysis}, journal = {CoRR}, volume = {abs/1702.05747}, year = {2017}, url = {http://arxiv.org/abs/1702.05747}, eprinttype = {arXiv}, eprint = {1702.05747}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/LitjensKBSCGLGS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/CiompiGBSBLGNL17, author = {Francesco Ciompi and Oscar Geessink and Babak Ehteshami Bejnordi and Gabriel Silva de Souza and Alexi Baidoshvili and Geert Litjens and Bram van Ginneken and Iris Nagtegaal and Jeroen van der Laak}, title = {The importance of stain normalization in colorectal tissue classification with convolutional networks}, journal = {CoRR}, volume = {abs/1702.05931}, year = {2017}, url = {http://arxiv.org/abs/1702.05931}, eprinttype = {arXiv}, eprint = {1702.05931}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/CiompiGBSBLGNL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BandiLIGCGLL17, author = {P{\'{e}}ter B{\'{a}}ndi and Rob van de Loo and Milad Intezar and Daan Geijs and Francesco Ciompi and Bram van Ginneken and Jeroen van der Laak and Geert Litjens}, title = {Comparison of Different Methods for Tissue Segmentation in Histopathological Whole-Slide Images}, journal = {CoRR}, volume = {abs/1703.05990}, year = {2017}, url = {http://arxiv.org/abs/1703.05990}, eprinttype = {arXiv}, eprint = {1703.05990}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BandiLIGCGLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BejnordiZBHBGKL17, author = {Babak Ehteshami Bejnordi and Guido C. A. Zuidhof and Maschenka Balkenhol and Meyke Hermsen and Peter Bult and Bram van Ginneken and Nico Karssemeijer and Geert Litjens and Jeroen van der Laak}, title = {Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images}, journal = {CoRR}, volume = {abs/1705.03678}, year = {2017}, url = {http://arxiv.org/abs/1705.03678}, eprinttype = {arXiv}, eprint = {1705.03678}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BejnordiZBHBGKL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/BejnordiLTOHKL16, author = {Babak Ehteshami Bejnordi and Geert Litjens and Nadya Timofeeva and Irene Otte{-}H{\"{o}}ller and Andr{\'{e}} Homeyer and Nico Karssemeijer and Jeroen A. W. M. van der Laak}, title = {Stain Specific Standardization of Whole-Slide Histopathological Images}, journal = {{IEEE} Trans. Medical Imaging}, volume = {35}, number = {2}, pages = {404--415}, year = {2016}, url = {https://doi.org/10.1109/TMI.2015.2476509}, doi = {10.1109/TMI.2015.2476509}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/BejnordiLTOHKL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/SetioCLGJRWNSG16, author = {Arnaud Arindra Adiyoso Setio and Francesco Ciompi and Geert Litjens and Paul K. Gerke and Colin Jacobs and Sarah J. van Riel and Mathilde Marie Winkler Wille and Matiullah Naqibullah and Clara I. S{\'{a}}nchez and Bram van Ginneken}, title = {Pulmonary Nodule Detection in {CT} Images: False Positive Reduction Using Multi-View Convolutional Networks}, journal = {{IEEE} Trans. Medical Imaging}, volume = {35}, number = {5}, pages = {1160--1169}, year = {2016}, url = {https://doi.org/10.1109/TMI.2016.2536809}, doi = {10.1109/TMI.2016.2536809}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/SetioCLGJRWNSG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/BejnordiBLHBKL16, author = {Babak Ehteshami Bejnordi and Maschenka Balkenhol and Geert Litjens and Roland Holland and Peter Bult and Nico Karssemeijer and Jeroen A. W. M. van der Laak}, title = {Automated Detection of {DCIS} in Whole-Slide H{\&}E Stained Breast Histopathology Images}, journal = {{IEEE} Trans. Medical Imaging}, volume = {35}, number = {9}, pages = {2141--2150}, year = {2016}, url = {https://doi.org/10.1109/TMI.2016.2550620}, doi = {10.1109/TMI.2016.2550620}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/BejnordiBLHBKL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/LitjensSG16, author = {Geert Litjens and Kai Safferling and Niels Grabe}, editor = {Metin N. Gurcan and Anant Madabhushi}, title = {Automated robust registration of grossly misregistered whole-slide images with varying stains}, booktitle = {Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February - 3 March 2016}, series = {{SPIE} Proceedings}, volume = {9791}, pages = {979103}, publisher = {{SPIE}}, year = {2016}, url = {https://doi.org/10.1117/12.2216672}, doi = {10.1117/12.2216672}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midp/LitjensSG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/GhafoorianKHUSL16, author = {Mohsen Ghafoorian and Nico Karssemeijer and Tom Heskes and Inge van Uden and Clara I. S{\'{a}}nchez and Geert Litjens and Frank{-}Erik de Leeuw and Bram van Ginneken and Elena Marchiori and Bram Platel}, title = {Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities}, journal = {CoRR}, volume = {abs/1610.04834}, year = {2016}, url = {http://arxiv.org/abs/1610.04834}, eprinttype = {arXiv}, eprint = {1610.04834}, timestamp = {Thu, 23 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/GhafoorianKHUSL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/BejnordiLHKL15, author = {Babak Ehteshami Bejnordi and Geert Litjens and Meyke Hermsen and Nico Karssemeijer and Jeroen A. W. M. van der Laak}, editor = {Metin N. Gurcan and Anant Madabhushi}, title = {A multi-scale superpixel classification approach to the detection of regions of interest in whole slide histopathology images}, booktitle = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United States, 21-26 February 2015}, series = {{SPIE} Proceedings}, volume = {9420}, pages = {94200H}, publisher = {{SPIE}}, year = {2015}, url = {https://doi.org/10.1117/12.2081768}, doi = {10.1117/12.2081768}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/BejnordiLHKL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midp/LitjensBTSKKL15, author = {Geert Litjens and Babak Ehteshami Bejnordi and Nadya Timofeeva and G. Swadi and Iringo Kovacs and Christina A. Hulsbergen van de Kaa and Jeroen van der Laak}, editor = {Metin N. Gurcan and Anant Madabhushi}, title = {Automated detection of prostate cancer in digitized whole-slide images of {H} and E-stained biopsy specimens}, booktitle = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United States, 21-26 February 2015}, series = {{SPIE} Proceedings}, volume = {9420}, pages = {94200B}, publisher = {{SPIE}}, year = {2015}, url = {https://doi.org/10.1117/12.2081366}, doi = {10.1117/12.2081366}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midp/LitjensBTSKKL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/LitjensTVHKGVGBZSMODKJYQGEMHGMDBHM14, author = {Geert Litjens and Robert Toth and Wendy J. M. van de Ven and Caroline Hoeks and Sjoerd Kerkstra and Bram van Ginneken and Graham Vincent and Gwena{\"{e}}l Guillard and Neil Birbeck and Jindang Zhang and Robin Strand and Filip Malmberg and Yangming Ou and Christos Davatzikos and Matthias Kirschner and Florian Jung and Jing Yuan and Wu Qiu and Qinquan Gao and Philip J. Edwards and Bianca Maan and Ferdinand van der Heijden and Soumya Ghose and Jhimli Mitra and Jason Dowling and Dean C. Barratt and Henkjan J. Huisman and Anant Madabhushi}, title = {Evaluation of prostate segmentation algorithms for {MRI:} The {PROMISE12} challenge}, journal = {Medical Image Anal.}, volume = {18}, number = {2}, pages = {359--373}, year = {2014}, url = {https://doi.org/10.1016/j.media.2013.12.002}, doi = {10.1016/J.MEDIA.2013.12.002}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/LitjensTVHKGVGBZSMODKJYQGEMHGMDBHM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/LitjensDBKH14, author = {Geert Litjens and Oscar Debats and Jelle O. Barentsz and Nico Karssemeijer and Henkjan J. Huisman}, title = {Computer-Aided Detection of Prostate Cancer in {MRI}}, journal = {{IEEE} Trans. Medical Imaging}, volume = {33}, number = {5}, pages = {1083--1092}, year = {2014}, url = {https://doi.org/10.1109/TMI.2014.2303821}, doi = {10.1109/TMI.2014.2303821}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/LitjensDBKH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/micad/LitjensESFBKKHM14, author = {Geert J. S. Litjens and R. Elliott and Natalie Shih and Michael D. Feldman and Jelle O. Barentsz and Christina A. Hulsbergen van de Kaa and Iringo Kovacs and Henkjan J. Huisman and Anant Madabhushi}, editor = {Stephen R. Aylward and Lubomir M. Hadjiiski}, title = {Distinguishing prostate cancer from benign confounders via a cascaded classifier on multi-parametric {MRI}}, booktitle = {Medical Imaging 2014: Computer-Aided Diagnosis, San Diego, California, United States, 15-20 February 2014}, series = {{SPIE} Proceedings}, volume = {9035}, pages = {903512}, publisher = {{SPIE}}, year = {2014}, url = {https://doi.org/10.1117/12.2043751}, doi = {10.1117/12.2043751}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/micad/LitjensESFBKKHM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miigp/LitjensHESFVFBM14, author = {Geert Litjens and Henkjan J. Huisman and R. Elliott and Natalie Shih and Michael D. Feldman and Satish Viswanath and Jurgen J. F{\"{u}}tterer and J. Bomers and Anant Madabhushi}, editor = {Ziv R. Yaniv and David R. Holmes III}, title = {Distinguishing benign confounding treatment changes from residual prostate cancer on {MRI} following laser ablation}, booktitle = {Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 15-20 February 2014}, series = {{SPIE} Proceedings}, volume = {9036}, pages = {90361D}, publisher = {{SPIE}}, year = {2014}, url = {https://doi.org/10.1117/12.2043819}, doi = {10.1117/12.2043819}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miigp/LitjensHESFVFBM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/micad/LitjensBKH12, author = {Geert J. S. Litjens and Jelle O. Barentsz and Nico Karssemeijer and Henkjan J. Huisman}, editor = {Bram van Ginneken and Carol L. Novak}, title = {Automated computer-aided detection of prostate cancer in {MR} images: from a whole-organ to a zone-based approach}, booktitle = {Medical Imaging 2012: Computer-Aided Diagnosis, San Diego, California, United States, 4-9 February 2012}, series = {{SPIE} Proceedings}, volume = {8315}, pages = {83150G}, publisher = {{SPIE}}, year = {2012}, url = {https://doi.org/10.1117/12.911061}, doi = {10.1117/12.911061}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/micad/LitjensBKH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LitjensDVKH12, author = {Geert Litjens and Oscar Debats and Wendy J. M. van de Ven and Nico Karssemeijer and Henkjan J. Huisman}, editor = {Nicholas Ayache and Herv{\'{e}} Delingette and Polina Golland and Kensaku Mori}, title = {A Pattern Recognition Approach to Zonal Segmentation of the Prostate on {MRI}}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2012 - 15th International Conference, Nice, France, October 1-5, 2012, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {7511}, pages = {413--420}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33418-4\_51}, doi = {10.1007/978-3-642-33418-4\_51}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LitjensDVKH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/micad/LitjensVBKH11, author = {Geert J. S. Litjens and Pieter C. Vos and Jelle O. Barentsz and Nico Karssemeijer and Henkjan J. Huisman}, editor = {Ronald M. Summers and Bram van Ginneken}, title = {Automatic computer aided detection of abnormalities in multi-parametric prostate {MRI}}, booktitle = {Medical Imaging 2011: Computer-Aided Diagnosis, Lake Buena Vista (Orlando), Florida, United States, 12-17 February 2011}, series = {{SPIE} Proceedings}, volume = {7963}, pages = {79630T}, publisher = {{SPIE}}, year = {2011}, url = {https://doi.org/10.1117/12.877844}, doi = {10.1117/12.877844}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/micad/LitjensVBKH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/VenLBHH11, author = {Wendy J. M. van de Ven and Geert J. S. Litjens and Jelle O. Barentsz and Thomas Hambrock and Henkjan J. Huisman}, editor = {Anant Madabhushi and Jason Dowling and Henkjan J. Huisman and Dean C. Barratt}, title = {Required Accuracy of {MR-US} Registration for Prostate Biopsies}, booktitle = {Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions - International Workshop, Held in Conjunction with {MICCAI} 2011, Toronto, Canada, September 22, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6963}, pages = {92--99}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23944-1\_10}, doi = {10.1007/978-3-642-23944-1\_10}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/VenLBHH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/LitjensHBR10, author = {Geert J. S. Litjens and Marieke Heisen and Johannes Buurman and Bart M. ter Haar Romeny}, title = {Pharmacokinetic models in clinical practice: what model to use for {DCE-MRI} of the breast?}, booktitle = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April, 2010}, pages = {185--188}, publisher = {{IEEE}}, year = {2010}, url = {https://doi.org/10.1109/ISBI.2010.5490382}, doi = {10.1109/ISBI.2010.5490382}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/LitjensHBR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HuismanVLHB10, author = {Henkjan J. Huisman and Pieter C. Vos and Geert Litjens and Thomas Hambrock and Jelle O. Barentsz}, editor = {Anant Madabhushi and Jason Dowling and Pingkun Yan and Aaron Fenster and Purang Abolmaesumi and Nobuhiko Hata}, title = {Computer Aided Detection of Prostate Cancer Using T2, {DWI} and {DCE} {MRI:} Methods and Clinical Applications}, booktitle = {Prostate Cancer Imaging. Computer-Aided Diagnosis, Prognosis, and Intervention - International Workshop, Held in Conjunction with {MICCAI} 2010, Beijing, China, September 24, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6367}, pages = {4--14}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15989-3\_2}, doi = {10.1007/978-3-642-15989-3\_2}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HuismanVLHB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LitjensHSJVG10, author = {Geert J. S. Litjens and Laurens Hogeweg and Arnold M. R. Schilham and Pim A. de Jong and Max A. Viergever and Bram van Ginneken}, editor = {Tianzi Jiang and Nassir Navab and Josien P. W. Pluim and Max A. Viergever}, title = {Simulation of Nodules and Diffuse Infiltrates in Chest Radiographs Using {CT} Templates}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {6362}, pages = {396--403}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15745-5\_49}, doi = {10.1007/978-3-642-15745-5\_49}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LitjensHSJVG10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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