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ORCIDBibTeX records: Ruth C. Lovering
@article{DBLP:journals/ploscb/ZhaoVLEHLM23,
author = {Yibo Zhao and
Nikoleta Vavouraki and
Ruth C. Lovering and
Valentina Escott{-}Price and
Kirsten Harvey and
Patrick A. Lewis and
Claudia Manzoni},
title = {Tissue specific {LRRK2} interactomes reveal a distinct striatal functional
unit},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {1},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010847},
doi = {10.1371/JOURNAL.PCBI.1010847},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZhaoVLEHLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SaverimuttuKRGA21,
author = {Shirin C. C. Saverimuttu and
Barbara Kramarz and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Penelope Garmiri and
Helen Attrill and
Katherine E. Thurlow and
Marios Makris and
Sandra M. Pinheiro and
Sandra E. Orchard and
Ruth C. Lovering},
title = {Gene Ontology curation of the blood-brain barrier to improve the analysis
of Alzheimer's and other neurological diseases},
journal = {Database J. Biol. Databases Curation},
volume = {2021},
year = {2021},
url = {https://doi.org/10.1093/database/baab067},
doi = {10.1093/DATABASE/BAAB067},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SaverimuttuKRGA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ToureVALOBCCdFG21,
author = {Vasundra Tour{\'{e}} and
Steven Vercruysse and
Marcio Luis Acencio and
Ruth C. Lovering and
Sandra E. Orchard and
Glyn Bradley and
Cristina Casals{-}Casas and
Claudine Chaouiya and
Noemi del{-}Toro and
{\AA}smund Flobak and
Pascale Gaudet and
Henning Hermjakob and
Charles Tapley Hoyt and
Luana Licata and
Astrid L{\ae}greid and
Christopher J. Mungall and
Anne Niknejad and
Simona Panni and
Livia Perfetto and
Pablo Porras and
Dexter Pratt and
Julio Saez{-}Rodriguez and
Denis Thieffry and
Paul D. Thomas and
D{\'{e}}nes T{\"{u}}rei and
Martin Kuiper},
title = {The Minimum Information about a Molecular Interaction CAusal STatement
{(MI2CAST)}},
journal = {Bioinform.},
volume = {36},
number = {24},
pages = {5712--5718},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa622},
doi = {10.1093/BIOINFORMATICS/BTAA622},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ToureVALOBCCdFG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SweeneyPRFBSKSG21,
author = {Blake A. Sweeney and
Anton I. Petrov and
Carlos Eduardo Ribas and
Robert D. Finn and
Alex Bateman and
Maciej Szymanski and
Wojciech M. Karlowski and
Stefan E. Seemann and
Jan Gorodkin and
Jamie J. Cannone and
Robin Ray Gutell and
Simon Kay and
Steven J. Marygold and
Gilberto dos Santos and
Adam Frankish and
Jonathan M. Mudge and
Ruth Barshir and
Simon Fishilevich and
Patricia P. Chan and
Todd M. Lowe and
Ruth L. Seal and
Elspeth A. Bruford and
Simona Panni and
Pablo Porras and
Dimitra Karagkouni and
Artemis G. Hatzigeorgiou and
Lina Ma and
Zhang Zhang and
Pieter{-}Jan Volders and
Pieter Mestdagh and
Sam Griffiths{-}Jones and
Bastian Fromm and
Kevin J. Peterson and
Ioanna Kalvari and
Eric P. Nawrocki and
Anton S. Petrov and
Shuai Weng and
Philia Bouchard{-}Bourelle and
Michelle S. Scott and
Lauren M. Lui and
David Hoksza and
Ruth C. Lovering and
Barbara Kramarz and
Prita Mani and
Sridhar Ramachandran and
Zasha Weinberg},
title = {RNAcentral 2021: secondary structure integration, improved sequence
search and new member databases},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D212--D220},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa921},
doi = {10.1093/NAR/GKAA921},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SweeneyPRFBSKSG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RamseyMRALRZLFG21,
author = {Jolene Ramsey and
Brenley K. McIntosh and
Daniel P. Renfro and
Suzanne A. Aleksander and
Sandra A. LaBonte and
Curtis Ross and
Adrienne E. Zweifel and
Nathan Liles and
Shabnam Farrar and
Jason J. Gill and
Ivan Erill and
Sarah Ades and
Tanya Z. Berardini and
Jennifer A. Bennett and
Siobhan M. Brady and
Robert Britton and
Seth Carbon and
Steven M. Caruso and
Dave Clements and
Ritu Dalia and
Meredith Defelice and
Erin L. Doyle and
Iddo Friedberg and
Susan M. R. Gurney and
Lee Hughes and
Allison Johnson and
Jason M. Kowalski and
Donghui Li and
Ruth C. Lovering and
Tamara L. Mans and
Fiona McCarthy and
Sean D. Moore and
Rebecca Murphy and
Timothy D. Paustian and
Sarah Perdue and
Celeste N. Peterson and
Birgit M. Pr{\"{u}}{\ss} and
Margaret S. Saha and
Robert R. Sheehy and
John T. Tansey and
Louise Temple and
Alexander William Thorman and
Saul Trevino and
Amy Cheng Vollmer and
Virginia Walbot and
Joanne Willey and
Deborah A. Siegele and
James C. Hu},
title = {Crowdsourcing biocuration: The Community Assessment of Community Annotation
with Ontologies {(CACAO)}},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {10},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009463},
doi = {10.1371/JOURNAL.PCBI.1009463},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RamseyMRALRZLFG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AttrillGHLEPAGC19,
author = {Helen Attrill and
Pascale Gaudet and
Rachael P. Huntley and
Ruth C. Lovering and
Stacia R. Engel and
Sylvain Poux and
Kimberly M. Van Auken and
George E. Georghiou and
Marcus C. Chibucos and
Tanya Z. Berardini and
Valerie Wood and
Harold J. Drabkin and
Petra Fey and
Penelope Garmiri and
Midori A. Harris and
Tony Sawford and
Leonore Reiser and
Rebecca Tauber and
Sabrina Toro and
The Gene Ontology Consortium},
title = {Annotation of gene product function from high-throughput studies using
the Gene Ontology},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz007},
year = {2019},
url = {https://doi.org/10.1093/database/baz007},
doi = {10.1093/DATABASE/BAZ007},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/AttrillGHLEPAGC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerfettoABCdFHK19,
author = {Livia Perfetto and
Marcio Luis Acencio and
Glyn Bradley and
Gianni Cesareni and
Noemi del{-}Toro and
D{\'{a}}vid Fazekas and
Henning Hermjakob and
Tam{\'{a}}s Korcsm{\'{a}}ros and
Martin Kuiper and
Astrid L{\ae}greid and
Prisca Lo Surdo and
Ruth C. Lovering and
Sandra E. Orchard and
Pablo Porras and
Paul D. Thomas and
Vasundra Tour{\'{e}} and
John Zobolas and
Luana Licata},
title = {CausalTAB: the {PSI-MITAB} 2.8 updated format for signalling data
representation and dissemination},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3779--3785},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz132},
doi = {10.1093/BIOINFORMATICS/BTZ132},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PerfettoABCdFHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KohlerCVJDGGHMM19,
author = {Sebastian K{\"{o}}hler and
Leigh Carmody and
Nicole A. Vasilevsky and
Julius O. B. Jacobsen and
Daniel Danis and
Jean{-}Philippe F. Gourdine and
Michael A. Gargano and
Nomi L. Harris and
Nicolas Matentzoglu and
Julie A. McMurry and
David Osumi{-}Sutherland and
Valentina Cipriani and
James P. Balhoff and
Tom Conlin and
Hannah Blau and
Gareth Baynam and
Richard Palmer and
Dylan Gratian and
Hugh J. S. Dawkins and
Michael Segal and
Anna C. Jansen and
Ahmed Muaz and
Willie H. Chang and
Jenna Bergerson and
Stanley J. F. Laulederkind and
Zafer Y{\"{u}}ksel and
Sergi Beltran and
Alexandra F. Freeman and
Panagiotis I. Sergouniotis and
Daniel Durkin and
Andrea L. Storm and
Marc Hanauer and
Michael Brudno and
Susan M. Bello and
Murat Sincan and
Kayli Rageth and
Matthew T. Wheeler and
Renske Oegema and
Halima Lourghi and
Maria G. Della Rocca and
Rachel Thompson and
Francisco Castellanos and
James Priest and
Charlotte Cunningham{-}Rundles and
Ayushi Hegde and
Ruth C. Lovering and
Catherine Hajek and
Annie Olry and
Luigi Notarangelo and
Morgan Similuk and
Xingmin Aaron Zhang and
David G{\'{o}}mez{-}Andr{\'{e}}s and
Hanns Lochm{\"{u}}ller and
H{\'{e}}l{\`{e}}ne Dollfus and
Sergio Rosenzweig and
Shruti Marwaha and
Ana Rath and
Kathleen Sullivan and
Cynthia L. Smith and
Joshua D. Milner and
Doroth{\'{e}}e Leroux and
Cornelius F. Boerkoel and
Amy Klion and
Melody C. Carter and
Tudor Groza and
Damian Smedley and
Melissa A. Haendel and
Chris Mungall and
Peter N. Robinson},
title = {Expansion of the Human Phenotype Ontology {(HPO)} knowledge base and
resources},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1018--D1027},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1105},
doi = {10.1093/NAR/GKY1105},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KohlerCVJDGGHMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauAABCC18,
author = {M. Sivade Dumousseau and
Diego Alonso{-}L{\'{o}}pez and
Mais G. Ammari and
Glyn Bradley and
Nancy H. Campbell and
Arnaud C{\'{e}}ol and
Gianni Cesareni and
Colin W. Combe and
Javier De Las Rivas and
Noemi del{-}Toro and
Joshua Heimbach and
Henning Hermjakob and
Igor Jurisica and
Maximilian Koch and
Luana Licata and
Ruth C. Lovering and
David J. Lynn and
Birgit H. M. Meldal and
Gos Micklem and
Simona Panni and
Pablo Porras and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Lukasz Salw{\'{\i}}nski and
Anjali Shrivastava and
Julie M. Sullivan and
Nicolas Thierry{-}Mieg and
Yo Yehudi and
Kim Van Roey and
Sandra E. Orchard},
title = {Encompassing new use cases - level 3.0 of the {HUPO-PSI} format for
molecular interactions},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {134:1--134:8},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2118-1},
doi = {10.1186/S12859-018-2118-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DumousseauAABCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/FoulgerDHMSL16,
author = {Rebecca E. Foulger and
Paul Denny and
John Hardy and
Maria Jesus Martin and
Tony Sawford and
Ruth C. Lovering},
title = {Using the Gene Ontology to Annotate Key Players in Parkinson's Disease},
journal = {Neuroinformatics},
volume = {14},
number = {3},
pages = {297--304},
year = {2016},
url = {https://doi.org/10.1007/s12021-015-9293-2},
doi = {10.1007/S12021-015-9293-2},
timestamp = {Sun, 26 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ni/FoulgerDHMSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PatelRL15,
author = {Sejal Patel and
Paola Roncaglia and
Ruth C. Lovering},
title = {Using Gene Ontology to describe the role of the neurexin-neuroligin-SHANK
complex in human, mouse and rat and its relevance to autism},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {186:1--186:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0622-0},
doi = {10.1186/S12859-015-0622-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PatelRL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuntleyHABCDDFHKLLLMSAWM14,
author = {Rachael P. Huntley and
Midori A. Harris and
Yasmin Alam{-}Faruque and
Judith A. Blake and
Seth Carbon and
Heiko Dietze and
Emily C. Dimmer and
Rebecca E. Foulger and
David P. Hill and
Varsha K. Khodiyar and
Antonia Lock and
Jane Lomax and
Ruth C. Lovering and
Prudence Mutowo{-}Meullenet and
Tony Sawford and
Kimberly Van Auken and
Valerie Wood and
Christopher J. Mungall},
title = {A method for increasing expressivity of Gene Ontology annotations
using a compositional approach},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {155},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-155},
doi = {10.1186/1471-2105-15-155},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuntleyHABCDDFHKLLLMSAWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OrchardAABBBCCCdDDGHIJJKLLLMMMPPPRRRSTRCH14,
author = {Sandra E. Orchard and
Mais G. Ammari and
Bruno Aranda and
Lionel Breuza and
Leonardo Briganti and
Fiona Broackes{-}Carter and
Nancy H. Campbell and
Gayatri Chavali and
Carol Chen and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marine Dumousseau and
Eugenia Galeota and
Ursula Hinz and
Marta Iannuccelli and
Sruthi Jagannathan and
Rafael C. Jim{\'{e}}nez and
Jyoti Khadake and
Astrid L{\ae}greid and
Luana Licata and
Ruth C. Lovering and
Birgit Meldal and
Anna N. Melidoni and
Mila Milagros and
Daniele Peluso and
Livia Perfetto and
Pablo Porras and
Arathi Raghunath and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Andre Stutz and
Michael Tognolli and
Kim Van Roey and
Gianni Cesareni and
Henning Hermjakob},
title = {The MIntAct project - IntAct as a common curation platform for 11
molecular interaction databases},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {358--363},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1115},
doi = {10.1093/NAR/GKT1115},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OrchardAABBBCCCdDDGHIJJKLLLMMMPPPRRRSTRCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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