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ORCIDBibTeX records: Ján Manuch
@article{DBLP:journals/algorithmica/DobrevKKLMNOS20,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Weak Coverage of a Rectangular Barrier},
journal = {Algorithmica},
volume = {82},
number = {4},
pages = {721--746},
year = {2020},
url = {https://doi.org/10.1007/s00453-019-00611-7},
doi = {10.1007/S00453-019-00611-7},
timestamp = {Thu, 19 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/DobrevKKLMNOS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/CondonHKM20,
author = {Anne Condon and
Monir Hajiaghayi and
David G. Kirkpatrick and
J{\'{a}}n Manuch},
title = {Approximate majority analyses using tri-molecular chemical reaction
networks},
journal = {Nat. Comput.},
volume = {19},
number = {1},
pages = {249--270},
year = {2020},
url = {https://doi.org/10.1007/s11047-019-09756-4},
doi = {10.1007/S11047-019-09756-4},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/CondonHKM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/HalesHMPS17,
author = {Jozef Hales and
Alice H{\'{e}}liou and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models},
journal = {Algorithmica},
volume = {79},
number = {3},
pages = {835--856},
year = {2017},
url = {https://doi.org/10.1007/s00453-016-0196-x},
doi = {10.1007/S00453-016-0196-X},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/HalesHMPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/CondonKM17,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
title = {Design of nucleic acid strands with long low-barrier folding pathways},
journal = {Nat. Comput.},
volume = {16},
number = {2},
pages = {261--284},
year = {2017},
url = {https://doi.org/10.1007/s11047-016-9587-9},
doi = {10.1007/S11047-016-9587-9},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/CondonKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RajaramanZMC17,
author = {Ashok Rajaraman and
Jo{\~{a}}o Paulo Pereira Zanetti and
J{\'{a}}n Manuch and
C{\'{e}}dric Chauve},
title = {Algorithms and Complexity Results for Genome Mapping Problems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {2},
pages = {418--430},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2016.2528239},
doi = {10.1109/TCBB.2016.2528239},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RajaramanZMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ciac/DobrevKKLMNOSS17,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Sunil M. Shende and
Ladislav Stacho},
editor = {Dimitris Fotakis and
Aris Pagourtzis and
Vangelis Th. Paschos},
title = {Weak Coverage of a Rectangular Barrier},
booktitle = {Algorithms and Complexity - 10th International Conference, {CIAC}
2017, Athens, Greece, May 24-26, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10236},
pages = {196--208},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-57586-5\_17},
doi = {10.1007/978-3-319-57586-5\_17},
timestamp = {Thu, 24 Mar 2022 11:08:56 +0100},
biburl = {https://dblp.org/rec/conf/ciac/DobrevKKLMNOSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonHKM17,
author = {Anne Condon and
Monir Hajiaghayi and
David G. Kirkpatrick and
J{\'{a}}n Manuch},
editor = {Robert Brijder and
Lulu Qian},
title = {Simplifying Analyses of Chemical Reaction Networks for Approximate
Majority},
booktitle = {{DNA} Computing and Molecular Programming - 23rd International Conference,
{DNA} 23, Austin, TX, USA, September 24-28, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10467},
pages = {188--209},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-66799-7\_13},
doi = {10.1007/978-3-319-66799-7\_13},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dna/CondonHKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DobrevKKLMNOS17,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Weak Coverage of a Rectangular Barrier},
journal = {CoRR},
volume = {abs/1701.07294},
year = {2017},
url = {http://arxiv.org/abs/1701.07294},
eprinttype = {arXiv},
eprint = {1701.07294},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/DobrevKKLMNOS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/comgeo/DobrevHMMPNOS16,
author = {Stefan Dobrev and
Mohsen Eftekhari Hesari and
Fraser MacQuarie and
J{\'{a}}n Manuch and
Oscar Morales{-}Ponce and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Connectivity with directional antennas in the symmetric communication
model},
journal = {Comput. Geom.},
volume = {55},
pages = {1--25},
year = {2016},
url = {https://doi.org/10.1016/j.comgeo.2016.03.002},
doi = {10.1016/J.COMGEO.2016.03.002},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/comgeo/DobrevHMMPNOS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jocg/DotyCMRS16,
author = {David Doty and
Ho{-}Lin Chen and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
title = {Pattern overlap implies runaway growth in hierarchical tile systems},
journal = {J. Comput. Geom.},
volume = {7},
number = {2},
pages = {3--18},
year = {2016},
url = {https://doi.org/10.20382/jocg.v7i2a2},
doi = {10.20382/JOCG.V7I2A2},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jocg/DotyCMRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gc/CzyzowiczDJKKMP15,
author = {Jurek Czyzowicz and
Stefan Dobrev and
Benson L. Joeris and
Evangelos Kranakis and
Danny Krizanc and
J{\'{a}}n Manuch and
Oscar Morales{-}Ponce and
Jaroslav Opatrny and
Ladislav Stacho and
Jorge Urrutia},
title = {Monitoring the Plane with Rotating Radars},
journal = {Graphs Comb.},
volume = {31},
number = {2},
pages = {393--405},
year = {2015},
url = {https://doi.org/10.1007/s00373-015-1543-4},
doi = {10.1007/S00373-015-1543-4},
timestamp = {Mon, 03 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gc/CzyzowiczDJKKMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/CondonMT15,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {The complexity of string partitioning},
journal = {J. Discrete Algorithms},
volume = {32},
pages = {24--43},
year = {2015},
url = {https://doi.org/10.1016/j.jda.2014.11.002},
doi = {10.1016/J.JDA.2014.11.002},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jda/CondonMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/compgeom/ChenDMRS15,
author = {Ho{-}Lin Chen and
David Doty and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
editor = {Lars Arge and
J{\'{a}}nos Pach},
title = {Pattern Overlap Implies Runaway Growth in Hierarchical Tile Systems},
booktitle = {31st International Symposium on Computational Geometry, SoCG 2015,
June 22-25, 2015, Eindhoven, The Netherlands},
series = {LIPIcs},
volume = {34},
pages = {360--373},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2015},
url = {https://doi.org/10.4230/LIPIcs.SOCG.2015.360},
doi = {10.4230/LIPICS.SOCG.2015.360},
timestamp = {Wed, 16 Jun 2021 12:03:14 +0200},
biburl = {https://dblp.org/rec/conf/compgeom/ChenDMRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/HalesMPS15,
author = {Jozef Hales and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
editor = {Ferdinando Cicalese and
Ely Porat and
Ugo Vaccaro},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm},
booktitle = {Combinatorial Pattern Matching - 26th Annual Symposium, {CPM} 2015,
Ischia Island, Italy, June 29 - July 1, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9133},
pages = {231--246},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-19929-0\_20},
doi = {10.1007/978-3-319-19929-0\_20},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/HalesMPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HalesMPS15,
author = {Jozef Hales and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm},
journal = {CoRR},
volume = {abs/1502.03201},
year = {2015},
url = {http://arxiv.org/abs/1502.03201},
eprinttype = {arXiv},
eprint = {1502.03201},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HalesMPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KinneMRR15,
author = {Jeff Kinne and
J{\'{a}}n Manuch and
Akbar Rafiey and
Arash Rafiey},
title = {Ordering with precedence constraints and budget minimization},
journal = {CoRR},
volume = {abs/1507.04885},
year = {2015},
url = {http://arxiv.org/abs/1507.04885},
eprinttype = {arXiv},
eprint = {1507.04885},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KinneMRR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/CondonKM14,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
title = {Reachability bounds for chemical reaction networks and strand displacement
systems},
journal = {Nat. Comput.},
volume = {13},
number = {4},
pages = {499--516},
year = {2014},
url = {https://doi.org/10.1007/s11047-013-9403-8},
doi = {10.1007/S11047-013-9403-8},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/CondonKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ManuchR14,
author = {J{\'{a}}n Manuch and
Arash Rafiey},
title = {Finding minimum Tucker submatrices},
journal = {CoRR},
volume = {abs/1401.4739},
year = {2014},
url = {http://arxiv.org/abs/1401.4739},
eprinttype = {arXiv},
eprint = {1401.4739},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ManuchR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ChenDMRS14,
author = {Ho{-}Lin Chen and
David Doty and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
title = {Pattern overlap implies runaway growth in hierarchical tile systems},
journal = {CoRR},
volume = {abs/1411.6672},
year = {2014},
url = {http://arxiv.org/abs/1411.6672},
eprinttype = {arXiv},
eprint = {1411.6672},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ChenDMRS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ausai/SafaeiMS13,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Ladislav Stacho},
editor = {Stephen Cranefield and
Abhaya C. Nayak},
title = {Learning Polytrees with Constant Number of Roots from Data},
booktitle = {{AI} 2013: Advances in Artificial Intelligence - 26th Australasian
Joint Conference, Dunedin, New Zealand, December 1-6, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8272},
pages = {447--452},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-03680-9\_45},
doi = {10.1007/978-3-319-03680-9\_45},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/ausai/SafaeiMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/colognetwente/ManuchPWCT13,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler and
C{\'{e}}dric Chauve and
Eric Tannier},
editor = {Kamiel Cornelissen and
Ruben Hoeksma and
Johann L. Hurink and
Bodo Manthey},
title = {Linearization of ancestral multichromosomal genomes},
booktitle = {12th Cologne-Twente Workshop on Graphs and Combinatorial Optimization,
Enschede, Netherlands, May 21-23, 2013},
series = {{CTIT} Workshop Proceedings},
volume = {{WP} 13-01},
pages = {169--173},
year = {2013},
timestamp = {Mon, 06 Apr 2020 17:04:26 +0200},
biburl = {https://dblp.org/rec/conf/colognetwente/ManuchPWCT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ManuchPWCT12,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler and
C{\'{e}}dric Chauve and
Eric Tannier},
title = {Linearization of ancestral multichromosomal genomes},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S11},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S11},
doi = {10.1186/1471-2105-13-S19-S11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ManuchPWCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/ManuchPC12,
author = {J{\'{a}}n Manuch and
Murray Patterson and
C{\'{e}}dric Chauve},
title = {Hardness results on the gapped consecutive-ones property problem},
journal = {Discret. Appl. Math.},
volume = {160},
number = {18},
pages = {2760--2768},
year = {2012},
url = {https://doi.org/10.1016/j.dam.2012.03.019},
doi = {10.1016/J.DAM.2012.03.019},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/ManuchPC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMSZ12,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Algorithm for Haplotype Inference via Galled-Tree Networks with Simple
Galls},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {439--454},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0145},
doi = {10.1089/CMB.2010.0145},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GuptaMSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/ManuchSS12,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Step-wise tile assembly with a constant number of tile types},
journal = {Nat. Comput.},
volume = {11},
number = {3},
pages = {535--550},
year = {2012},
url = {https://doi.org/10.1007/s11047-012-9321-1},
doi = {10.1007/S11047-012-9321-1},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/ManuchSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/CondonMT12,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
editor = {Juha K{\"{a}}rkk{\"{a}}inen and
Jens Stoye},
title = {The Complexity of String Partitioning},
booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
Helsinki, Finland, July 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7354},
pages = {159--172},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31265-6\_13},
doi = {10.1007/978-3-642-31265-6\_13},
timestamp = {Tue, 21 Mar 2023 21:02:12 +0100},
biburl = {https://dblp.org/rec/conf/cpm/CondonMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/BehsazMS12,
author = {Bahar Behsaz and
J{\'{a}}n Manuch and
Ladislav Stacho},
editor = {Darko Stefanovic and
Andrew J. Turberfield},
title = {Turing Universality of Step-Wise and Stage Assembly at Temperature
1},
booktitle = {{DNA} Computing and Molecular Programming - 18th International Conference,
{DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7433},
pages = {1--11},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32208-2\_1},
doi = {10.1007/978-3-642-32208-2\_1},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dna/BehsazMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonKM12,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
editor = {Darko Stefanovic and
Andrew J. Turberfield},
title = {Reachability Bounds for Chemical Reaction Networks and Strand Displacement
Systems},
booktitle = {{DNA} Computing and Molecular Programming - 18th International Conference,
{DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7433},
pages = {43--57},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32208-2\_4},
doi = {10.1007/978-3-642-32208-2\_4},
timestamp = {Fri, 19 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dna/CondonKM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1204-2201,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {The complexity of string partitioning},
journal = {CoRR},
volume = {abs/1204.2201},
year = {2012},
url = {http://arxiv.org/abs/1204.2201},
eprinttype = {arXiv},
eprint = {1204.2201},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1204-2201.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WittlerMPS11,
author = {Roland Wittler and
J{\'{a}}n Manuch and
Murray Patterson and
Jens Stoye},
title = {Consistency of Sequence-Based Gene Clusters},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1023--1039},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0083},
doi = {10.1089/CMB.2011.0083},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WittlerMPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ManuchP11,
author = {J{\'{a}}n Manuch and
Murray Patterson},
title = {The Complexity of the Gapped Consecutive-Ones Property Problem for
Matrices of Bounded Maximum Degree},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1243--1253},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0128},
doi = {10.1089/CMB.2011.0128},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ManuchP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/ManuchTSC11,
author = {J{\'{a}}n Manuch and
Chris Thachuk and
Ladislav Stacho and
Anne Condon},
title = {NP-completeness of the energy barrier problem without pseudoknots
and temporary arcs},
journal = {Nat. Comput.},
volume = {10},
number = {1},
pages = {391--405},
year = {2011},
url = {https://doi.org/10.1007/s11047-010-9239-4},
doi = {10.1007/S11047-010-9239-4},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/ManuchTSC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP11,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Arvind Gupta and
Ladislav Stacho and
Steven Pelech},
editor = {Fang{-}Xiang Wu and
Mohammed Javeed Zaki and
Shinichi Morishita and
Yi Pan and
Stephen Wong and
Anastasia Christianson and
Xiaohua Hu},
title = {Evolutionary Conservation of Human Phosphorylation Sites},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
pages = {222--227},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBM.2011.58},
doi = {10.1109/BIBM.2011.58},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/SafaeiMGSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/ChauveMPW11,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler},
editor = {Raffaele Giancarlo and
Giovanni Manzini},
title = {Tractability Results for the Consecutive-Ones Property with Multiplicity},
booktitle = {Combinatorial Pattern Matching - 22nd Annual Symposium, {CPM} 2011,
Palermo, Italy, June 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6661},
pages = {90--103},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21458-5\_10},
doi = {10.1007/978-3-642-21458-5\_10},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/ChauveMPW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonHMT11,
author = {Anne Condon and
Alan J. Hu and
J{\'{a}}n Manuch and
Chris Thachuk},
editor = {Luca Cardelli and
William M. Shih},
title = {Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement
Systems},
booktitle = {{DNA} Computing and Molecular Programming - 17th International Conference,
{DNA} 17, Pasadena, CA, USA, September 19-23, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6937},
pages = {84--99},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23638-9\_9},
doi = {10.1007/978-3-642-23638-9\_9},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dna/CondonHMT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/ManuchPG11,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Arvind Gupta},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {Towards a Characterisation of the Generalised Cladistic Character
Compatibility Problem for Non-branching Character Trees},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {440--451},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_41},
doi = {10.1007/978-3-642-21260-4\_41},
timestamp = {Fri, 21 Aug 2020 17:12:20 +0200},
biburl = {https://dblp.org/rec/conf/isbra/ManuchPG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ManuchSS10,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Two Lower Bounds for Self-Assemblies at Temperature 1},
journal = {J. Comput. Biol.},
volume = {17},
number = {6},
pages = {841--852},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0067},
doi = {10.1089/CMB.2009.0067},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ManuchSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuptaKMSZ10,
author = {Arvind Gupta and
Mohammad M. Karimi and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Haplotype Inferring via Galled-Tree Networks Is NP-Complete},
journal = {J. Comput. Biol.},
volume = {17},
number = {10},
pages = {1435--1449},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0117},
doi = {10.1089/CMB.2009.0117},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GuptaKMSZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP10,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Arvind Gupta and
Ladislav Stacho and
Steven Pelech},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {Prediction of human protein kinase substrate specificities},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {259--264},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706573},
doi = {10.1109/BIBM.2010.5706573},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/SafaeiMGSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/ManuchPPT10,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Sheung{-}Hung Poon and
Chris Thachuk},
editor = {Ulrik Brandes and
Sabine Cornelsen},
title = {Complexity of Finding Non-Planar Rectilinear Drawings of Graphs},
booktitle = {Graph Drawing - 18th International Symposium, {GD} 2010, Konstanz,
Germany, September 21-24, 2010. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6502},
pages = {305--316},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-18469-7\_28},
doi = {10.1007/978-3-642-18469-7\_28},
timestamp = {Sun, 13 Nov 2022 09:57:29 +0100},
biburl = {https://dblp.org/rec/conf/gd/ManuchPPT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ThachukMRMSC10,
author = {Chris Thachuk and
J{\'{a}}n Manuch and
Arash Rafiey and
Leigh{-}Anne Mathieson and
Ladislav Stacho and
Anne Condon},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {An Algorithm for the Energy Barrier Problem Without Pseudoknots and
Temporary Arcs},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {108--119},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/thachuk.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ThachukMRMSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ManuchP10,
author = {J{\'{a}}n Manuch and
Murray Patterson},
editor = {Eric Tannier},
title = {The Complexity of the Gapped Consecutive-Ones Property Problem for
Matrices of Bounded Maximum Degree},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {278--289},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_23},
doi = {10.1007/978-3-642-16181-0\_23},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ManuchP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/GuptaMSZ09,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Haplotype inferring via galled-tree networks using a hypergraph covering
problem for special genotype matrices},
journal = {Discret. Appl. Math.},
volume = {157},
number = {10},
pages = {2310--2324},
year = {2009},
url = {https://doi.org/10.1016/j.dam.2008.06.051},
doi = {10.1016/J.DAM.2008.06.051},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/GuptaMSZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dcg/ArdalMRSS09,
author = {Hayri Ardal and
J{\'{a}}n Manuch and
Moshe Rosenfeld and
Saharon Shelah and
Ladislav Stacho},
title = {The Odd-Distance Plane Graph},
journal = {Discret. Comput. Geom.},
volume = {42},
number = {2},
pages = {132--141},
year = {2009},
url = {https://doi.org/10.1007/s00454-009-9190-2},
doi = {10.1007/S00454-009-9190-2},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dcg/ArdalMRSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/AdamsAMHRS09,
author = {Peter Adams and
Hayri Ardal and
J{\'{a}}n Manuch and
Vu Dinh Hoa and
Moshe Rosenfeld and
Ladislav Stacho},
title = {Spanning cubic graph designs},
journal = {Discret. Math.},
volume = {309},
number = {18},
pages = {5781--5788},
year = {2009},
url = {https://doi.org/10.1016/j.disc.2008.07.031},
doi = {10.1016/J.DISC.2008.07.031},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/AdamsAMHRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/endm/ChauveMP09,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson},
title = {On the Gapped Consecutive-Ones Property},
journal = {Electron. Notes Discret. Math.},
volume = {34},
pages = {121--125},
year = {2009},
url = {https://doi.org/10.1016/j.endm.2009.07.020},
doi = {10.1016/J.ENDM.2009.07.020},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/endm/ChauveMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine
{(HPC)} Model},
journal = {J. Comput. Biol.},
volume = {16},
number = {1},
pages = {19--30},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.0096},
doi = {10.1089/CMB.2008.0096},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KhodabakhshiMRG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09a,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Inverse Protein Folding in 3D Hexagonal Prism Lattice under {HPC}
Model},
journal = {J. Comput. Biol.},
volume = {16},
number = {6},
pages = {769--802},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.0202},
doi = {10.1089/CMB.2008.0202},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KhodabakhshiMRG09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/ManuchPG09,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Arvind Gupta},
editor = {Hung Q. Ngo},
title = {On the Generalised Character Compatibility Problem for Non-branching
Character Trees},
booktitle = {Computing and Combinatorics, 15th Annual International Conference,
{COCOON} 2009, Niagara Falls, NY, USA, July 13-15, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5609},
pages = {268--276},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02882-3\_27},
doi = {10.1007/978-3-642-02882-3\_27},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/ManuchPG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/ManuchTSC09,
author = {J{\'{a}}n Manuch and
Chris Thachuk and
Ladislav Stacho and
Anne Condon},
editor = {Russell J. Deaton and
Akira Suyama},
title = {NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots},
booktitle = {{DNA} Computing and Molecular Programming, 15th International Conference,
{DNA} 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {5877},
pages = {106--115},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-10604-0\_11},
doi = {10.1007/978-3-642-10604-0\_11},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dna/ManuchTSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isaac/ManuchSS09,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
editor = {Yingfei Dong and
Ding{-}Zhu Du and
Oscar H. Ibarra},
title = {Step-Assembly with a Constant Number of Tile Types},
booktitle = {Algorithms and Computation, 20th International Symposium, {ISAAC}
2009, Honolulu, Hawaii, USA, December 16-18, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5878},
pages = {954--963},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-10631-6\_96},
doi = {10.1007/978-3-642-10631-6\_96},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/isaac/ManuchSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/ManuchSS09,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
editor = {Sung Y. Shin and
Sascha Ossowski},
title = {Two lower bounds for self-assemblies at temperature 1},
booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
Honolulu, Hawaii, USA, March 9-12, 2009},
pages = {808--809},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1529282.1529453},
doi = {10.1145/1529282.1529453},
timestamp = {Tue, 06 Nov 2018 11:06:49 +0100},
biburl = {https://dblp.org/rec/conf/sac/ManuchSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0912-0309,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson},
title = {Hardness Results for the Gapped Consecutive-Ones Property},
journal = {CoRR},
volume = {abs/0912.0309},
year = {2009},
url = {http://arxiv.org/abs/0912.0309},
eprinttype = {arXiv},
eprint = {0912.0309},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0912-0309.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ManuchG08,
author = {J{\'{a}}n Manuch and
Daya Ram Gaur},
title = {Fitting protein Chains to cubic Lattice is NP-Complete},
journal = {J. Bioinform. Comput. Biol.},
volume = {6},
number = {1},
pages = {93--106},
year = {2008},
url = {https://doi.org/10.1142/S0219720008003308},
doi = {10.1142/S0219720008003308},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ManuchG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/GuptaHMSZ08,
author = {Arvind Gupta and
Jan van den Heuvel and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {On the Complexity of Ordered Colorings},
journal = {{SIAM} J. Discret. Math.},
volume = {22},
number = {2},
pages = {832--847},
year = {2008},
url = {https://doi.org/10.1137/060676222},
doi = {10.1137/060676222},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/GuptaHMSZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {Structure-Approximating Design of Stable Proteins in 2D {HP} Model
Fortified by Cysteine Monomers},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {49--58},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc110a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/KhodabakhshiMRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Inverse protein folding in 3D hexagonal prism lattice under {HP} model},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {619--625},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/KhodabakhshiMRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
editor = {Mourad Elloumi and
Josef K{\"{u}}ng and
Michal Linial and
Robert F. Murphy and
Kristan Schneider and
Cristian Toma},
title = {A Robust Class of Stable Proteins in the 2D {HPC} Model},
booktitle = {Bioinformatics Research and Development, Second International Conference,
{BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
series = {Communications in Computer and Information Science},
volume = {13},
pages = {180--192},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-70600-7\_14},
doi = {10.1007/978-3-540-70600-7\_14},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bird/KhodabakhshiMRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/CondonMT08,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
editor = {Xiaodong Hu and
Jie Wang},
title = {Complexity of a Collision-Aware String Partition Problem and Its Relation
to Oligo Design for Gene Synthesis},
booktitle = {Computing and Combinatorics, 14th Annual International Conference,
{COCOON} 2008, Dalian, China, June 27-29, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5092},
pages = {265--275},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69733-6\_27},
doi = {10.1007/978-3-540-69733-6\_27},
timestamp = {Tue, 10 Dec 2019 14:59:33 +0100},
biburl = {https://dblp.org/rec/conf/cocoon/CondonMT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/GuptaMSZ08,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
editor = {Xiaodong Hu and
Jie Wang},
title = {Haplotype Inferring Via Galled-Tree Networks Is NP-Complete},
booktitle = {Computing and Combinatorics, 14th Annual International Conference,
{COCOON} 2008, Dalian, China, June 27-29, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5092},
pages = {287--298},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69733-6\_29},
doi = {10.1007/978-3-540-69733-6\_29},
timestamp = {Tue, 23 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/GuptaMSZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/ManuchG07,
author = {J{\'{a}}n Manuch and
Daya Ram Gaur},
editor = {David Sankoff and
Lusheng Wang and
Francis Y. L. Chin},
title = {Fitting Protein Chains to Cubic Lattice is NP-Complete},
booktitle = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
2007, 15-17 January 2007, Hong Kong, China},
series = {Advances in Bioinformatics and Computational Biology},
volume = {5},
pages = {153--164},
publisher = {Imperial College Press},
year = {2007},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2007/apbc226a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/ManuchG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/GuptaKKMR07,
author = {Arvind Gupta and
Mehdi Karimi and
Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism
Lattice Under {HP} Model},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2007, Volume II, June 25-28, 2007, Las Vegas Nevada,
{USA}},
pages = {362--369},
publisher = {{CSREA} Press},
year = {2007},
timestamp = {Thu, 08 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/GuptaKKMR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/GuptaMSZ07,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
editor = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple
Galls},
booktitle = {Bioinformatics Research and Applications, Third International Symposium,
{ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4463},
pages = {121--132},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72031-7\_11},
doi = {10.1007/978-3-540-72031-7\_11},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/isbra/GuptaMSZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GuptaMZS06,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Xiaohong Zhao and
Ladislav Stacho},
title = {Characterization of the Existence of Galled-tree Networks},
journal = {J. Bioinform. Comput. Biol.},
volume = {4},
number = {6},
pages = {1309--1328},
year = {2006},
url = {https://doi.org/10.1142/S0219720006002478},
doi = {10.1142/S0219720006002478},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/GuptaMZS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acid/GaurKM06,
author = {Daya Ram Gaur and
Ramesh Krishnamurti and
J{\'{a}}n Manuch},
editor = {Hajo Broersma and
Stefan S. Dantchev and
Matthew Johnson and
Stefan Szeider},
title = {Improved Approximation Algorithm for Scheduling Tasks with a Choice
of Start Times},
booktitle = {Algorithms and Complexity in Durham 2006 - Proceedings of the Second
ACiD Workshop, 18-20 September 2006, Durham, {UK}},
series = {Texts in Algorithmics},
volume = {7},
pages = {85--94},
publisher = {King's College, London},
year = {2006},
timestamp = {Tue, 24 Jul 2007 20:35:24 +0200},
biburl = {https://dblp.org/rec/conf/acid/GaurKM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/ManuchZSG06,
author = {J{\'{a}}n Manuch and
Xiaohong Zhao and
Ladislav Stacho and
Arvind Gupta},
editor = {Tao Jiang and
Ueng{-}Cheng Yang and
Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Characterization of the Existence of Galled-Tree Networks},
booktitle = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
2006, Taipei, Taiwan},
pages = {297--306},
publisher = {Imperial College Press, London},
year = {2006},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2006/236.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/ManuchZSG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpar/KavanaghMTMZG06,
author = {Jonathan Kavanagh and
David G. Mitchell and
Eugenia Ternovska and
J{\'{a}}n Manuch and
Xiaohong Zhao and
Arvind Gupta},
editor = {Miki Hermann and
Andrei Voronkov},
title = {Constructing Camin-Sokal Phylogenies Via Answer Set Programming},
booktitle = {Logic for Programming, Artificial Intelligence, and Reasoning, 13th
International Conference, {LPAR} 2006, Phnom Penh, Cambodia, November
13-17, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4246},
pages = {452--466},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11916277\_31},
doi = {10.1007/11916277\_31},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/conf/lpar/KavanaghMTMZG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/endm/GuptaMSZ05,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Ordered 3-colorings},
journal = {Electron. Notes Discret. Math.},
volume = {22},
pages = {299--300},
year = {2005},
url = {https://doi.org/10.1016/j.endm.2005.06.047},
doi = {10.1016/J.ENDM.2005.06.047},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/endm/GuptaMSZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMS05,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Structure-Approximating Inverse Protein Folding Problem in the 2D
{HP} Model},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1328--1345},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1328},
doi = {10.1089/CMB.2005.12.1328},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GuptaMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/join/BerenbrinkFMS05,
author = {Petra Berenbrink and
Tom Friedetzky and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {(quasi) Spanners for Mobile Ad Hoc Networks},
journal = {J. Interconnect. Networks},
volume = {6},
number = {2},
pages = {63--84},
year = {2005},
url = {https://doi.org/10.1142/S0219265905001320},
doi = {10.1142/S0219265905001320},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/join/BerenbrinkFMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/GuptaMSZ04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Chenchen Zhu},
editor = {S{\"{u}}leyman Cenk Sahinalp and
S. Muthukrishnan and
Ugur Dogrus{\"{o}}z},
title = {Small Phylogeny Problem: Character Evolution Trees},
booktitle = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004,
Istanbul,Turkey, July 5-7, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3109},
pages = {230--243},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-27801-6\_17},
doi = {10.1007/978-3-540-27801-6\_17},
timestamp = {Fri, 07 May 2021 12:57:04 +0200},
biburl = {https://dblp.org/rec/conf/cpm/GuptaMSZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/GuptaMS04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Inverse Protein Folding in 2D {HP} Mode (Extended Abstract)},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {311--318},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332444},
doi = {10.1109/CSB.2004.1332444},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/GuptaMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sirocco/GuptaMS04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
editor = {Rastislav Kralovic and
Ondrej S{\'{y}}kora},
title = {Fault Tolerant Forwarding and Optical Indexes: {A} Design Theory Approach},
booktitle = {Structural Information and Communication Complexity, 11th International
Colloquium , {SIROCCO} 2004, Smolenice Castle, Slovakia, June 21-23,
2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3104},
pages = {197--208},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-27796-5\_18},
doi = {10.1007/978-3-540-27796-5\_18},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/conf/sirocco/GuptaMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ita/ManuchS03,
author = {J{\'{a}}n Manuch and
Ladislav Stacho},
title = {On f-wise Arc Forwarding Index and Wavelength Allocations in Faulty
All-optical Hypercubes},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {37},
number = {3},
pages = {255--270},
year = {2003},
url = {https://doi.org/10.1051/ita:2003019},
doi = {10.1051/ITA:2003019},
timestamp = {Mon, 25 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ita/ManuchS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/KarhumakiMP03,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch and
Wojciech Plandowski},
title = {A defect theorem for bi-infinite words},
journal = {Theor. Comput. Sci.},
volume = {292},
number = {1},
pages = {237--243},
year = {2003},
url = {https://doi.org/10.1016/S0304-3975(01)00225-0},
doi = {10.1016/S0304-3975(01)00225-0},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/KarhumakiMP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/DuriM03,
author = {Pavol Duris and
J{\'{a}}n Manuch},
title = {On the computational complexity of infinite words},
journal = {Theor. Comput. Sci.},
volume = {295},
pages = {141--151},
year = {2003},
url = {https://doi.org/10.1016/S0304-3975(02)00400-0},
doi = {10.1016/S0304-3975(02)00400-0},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/DuriM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/KarhumakiM02,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch},
title = {Multiple factorizations of words and defect effect},
journal = {Theor. Comput. Sci.},
volume = {273},
number = {1-2},
pages = {81--97},
year = {2002},
url = {https://doi.org/10.1016/S0304-3975(00)00435-7},
doi = {10.1016/S0304-3975(00)00435-7},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/KarhumakiM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dmtcs/Manuch01,
author = {J{\'{a}}n Manuch},
title = {Defect Effect of Bi-infinite Words in the Two-element Case},
journal = {Discret. Math. Theor. Comput. Sci.},
volume = {4},
number = {2},
pages = {273--290},
year = {2001},
url = {https://doi.org/10.46298/dmtcs.279},
doi = {10.46298/DMTCS.279},
timestamp = {Tue, 24 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dmtcs/Manuch01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ita/CassaigneKM01,
author = {Julien Cassaigne and
Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch},
title = {On Conjugacy of Languages},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {35},
number = {6},
pages = {535--550},
year = {2001},
url = {https://doi.org/10.1051/ita:2001130},
doi = {10.1051/ITA:2001130},
timestamp = {Mon, 25 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ita/CassaigneKM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/DurisM01,
author = {Pavol Duris and
J{\'{a}}n Manuch},
editor = {Jir{\'{\i}} Sgall and
Ales Pultr and
Petr Kolman},
title = {On the Computational Complexity of Infinite Words},
booktitle = {Mathematical Foundations of Computer Science 2001, 26th International
Symposium, {MFCS} 2001 Marianske Lazne, Czech Republic, August 27-31,
2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2136},
pages = {328--337},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44683-4\_29},
doi = {10.1007/3-540-44683-4\_29},
timestamp = {Sat, 19 Oct 2019 20:31:50 +0200},
biburl = {https://dblp.org/rec/conf/mfcs/DurisM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ita/Manuch00,
author = {J{\'{a}}n Manuch},
title = {Construction of very hard functions for multiparty communication complexity},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {34},
number = {1},
pages = {61--76},
year = {2000},
url = {https://doi.org/10.1051/ita:2000107},
doi = {10.1051/ITA:2000107},
timestamp = {Mon, 25 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ita/Manuch00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dlt/Manuch99,
author = {J{\'{a}}n Manuch},
editor = {Grzegorz Rozenberg and
Wolfgang Thomas},
title = {Characterization of a word by its subwords},
booktitle = {Developments in Language Theory, Foundations, Applications, and Perspectives,
Aachen, Germany, 6-9 July 1999},
pages = {210--219},
publisher = {World Scientific},
year = {1999},
url = {https://doi.org/10.1142/9789812792464\_0018},
doi = {10.1142/9789812792464\_0018},
timestamp = {Thu, 27 Jun 2019 11:28:34 +0200},
biburl = {https://dblp.org/rec/conf/dlt/Manuch99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/Manuch99,
author = {J{\'{a}}n Manuch},
editor = {Miroslaw Kutylowski and
Leszek Pacholski and
Tomasz Wierzbicki},
title = {Multiparty Communication Complexity: Very Hard Functions},
booktitle = {Mathematical Foundations of Computer Science 1999, 24th International
Symposium, MFCS'99, Szklarska Poreba, Poland, September 6-10, 1999,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1672},
pages = {160--169},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48340-3\_15},
doi = {10.1007/3-540-48340-3\_15},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/mfcs/Manuch99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sirocco/ManuchS99,
author = {J{\'{a}}n Manuch and
Laszlo Stacho},
editor = {Cyril Gavoille and
Jean{-}Claude Bermond and
Andr{\'{e}} Raspaud},
title = {Fault-Tolerant Wavelength Allocations in All-optical Hypercubes},
booktitle = {SIROCCO'99, 6th International Colloquium on Structural Information
{\&} Communication Complexity, Lacanau-Ocean, France, 1-3 July,
1999},
pages = {219--222},
publisher = {Carleton Scientific},
year = {1999},
timestamp = {Mon, 23 Nov 2009 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sirocco/ManuchS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/KarhumakiMP98,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch and
Wojciech Plandowski},
editor = {Lubos Brim and
Jozef Gruska and
Jir{\'{\i}} Zlatuska},
title = {On Defect Effect of Bi-Infinite Words},
booktitle = {Mathematical Foundations of Computer Science 1998, 23rd International
Symposium, MFCS'98, Brno, Czech Republic, August 24-28, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1450},
pages = {674--682},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0055818},
doi = {10.1007/BFB0055818},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/mfcs/KarhumakiMP98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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