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ORCIDBibTeX records: Daniel Merkle
@article{DBLP:journals/jcb/EriksenAFM24,
author = {Casper Asbj{\o}rn Eriksen and
Jakob Lykke Andersen and
Rolf Fagerberg and
Daniel Merkle},
title = {Toward the Reconciliation of Inconsistent Molecular Structures from
Biochemical Databases},
journal = {J. Comput. Biol.},
volume = {31},
number = {6},
pages = {498--512},
year = {2024},
url = {https://doi.org/10.1089/cmb.2024.0520},
doi = {10.1089/CMB.2024.0520},
timestamp = {Sun, 08 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/EriksenAFM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/PhanWGMAFS24,
author = {Tieu{-}Long Phan and
Klaus Weinbauer and
Thomas G{\"{a}}rtner and
Daniel Merkle and
Jakob L. Andersen and
Rolf Fagerberg and
Peter F. Stadler},
title = {Reaction rebalancing: a novel approach to curating reaction databases},
journal = {J. Cheminformatics},
volume = {16},
number = {1},
pages = {82},
year = {2024},
url = {https://doi.org/10.1186/s13321-024-00875-4},
doi = {10.1186/S13321-024-00875-4},
timestamp = {Mon, 05 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/PhanWGMAFS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2404-02692,
author = {Jakob L. Andersen and
Akbar Davoodi and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Automated Inference of Graph Transformation Rules},
journal = {CoRR},
volume = {abs/2404.02692},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2404.02692},
doi = {10.48550/ARXIV.2404.02692},
eprinttype = {arXiv},
eprint = {2404.02692},
timestamp = {Mon, 13 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2404-02692.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/EriksenAFM23,
author = {Casper Asbj{\o}rn Eriksen and
Jakob Lykke Andersen and
Rolf Fagerberg and
Daniel Merkle},
editor = {Xuan Guo and
Serghei Mangul and
Murray Patterson and
Alexander Zelikovsky},
title = {Reconciling Inconsistent Molecular Structures from Biochemical Databases},
booktitle = {Bioinformatics Research and Applications - 19th International Symposium,
{ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14248},
pages = {58--71},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-99-7074-2\_5},
doi = {10.1007/978-981-99-7074-2\_5},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/EriksenAFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/AndersenBFFMS23,
author = {Jakob L. Andersen and
Sissel Banke and
Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Xuan Guo and
Serghei Mangul and
Murray Patterson and
Alexander Zelikovsky},
title = {On the Realisability of Chemical Pathways},
booktitle = {Bioinformatics Research and Applications - 19th International Symposium,
{ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14248},
pages = {409--419},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-981-99-7074-2\_32},
doi = {10.1007/978-981-99-7074-2\_32},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/AndersenBFFMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-12735,
author = {Casper Asbj{\o}rn Eriksen and
Jakob Lykke Andersen and
Rolf Fagerberg and
Daniel Merkle},
title = {Reconciling Inconsistent Molecular Structures from Biochemical Databases},
journal = {CoRR},
volume = {abs/2308.12735},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.12735},
doi = {10.48550/ARXIV.2308.12735},
eprinttype = {arXiv},
eprint = {2308.12735},
timestamp = {Fri, 25 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-12735.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-10629,
author = {Jakob L. Andersen and
Sissel Banke and
Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {On the Realisability of Chemical Pathways},
journal = {CoRR},
volume = {abs/2309.10629},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.10629},
doi = {10.48550/ARXIV.2309.10629},
eprinttype = {arXiv},
eprint = {2309.10629},
timestamp = {Tue, 26 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-10629.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/AndersenFFFKLMN22,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Representing Catalytic Mechanisms with Rule Composition},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {22},
pages = {5513--5524},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00426},
doi = {10.1021/ACS.JCIM.2C00426},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/AndersenFFFKLMN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FlammHMNS22,
author = {Christoph Flamm and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Peter F. Stadler},
title = {Generic Context-Aware Group Contributions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {429--442},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.2998948},
doi = {10.1109/TCBB.2020.2998948},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FlammHMNS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-04360,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Efficient Modular Graph Transformation Rule Application},
journal = {CoRR},
volume = {abs/2201.04360},
year = {2022},
url = {https://arxiv.org/abs/2201.04360},
eprinttype = {arXiv},
eprint = {2201.04360},
timestamp = {Thu, 20 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-04360.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-04515,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Characterizing Catalytic Mechanisms with Overlay Graphs},
journal = {CoRR},
volume = {abs/2201.04515},
year = {2022},
url = {https://arxiv.org/abs/2201.04515},
eprinttype = {arXiv},
eprint = {2201.04515},
timestamp = {Thu, 20 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-04515.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersenFFFKLMN21,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Graph transformation for enzymatic mechanisms},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {392--400},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab296},
doi = {10.1093/BIOINFORMATICS/BTAB296},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndersenFFFKLMN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NojgaardFHM21,
author = {Nikolai N{\o}jgaard and
Walter Fontana and
Marc Hellmuth and
Daniel Merkle},
title = {Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry},
journal = {J. Comput. Biol.},
volume = {28},
number = {7},
pages = {701--715},
year = {2021},
url = {https://doi.org/10.1089/cmb.2020.0548},
doi = {10.1089/CMB.2020.0548},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NojgaardFHM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BehrKAM21,
author = {Nicolas Behr and
Jean Krivine and
Jakob L. Andersen and
Daniel Merkle},
title = {Rewriting theory for the life sciences: {A} unifying theory of {CTMC}
semantics},
journal = {Theor. Comput. Sci.},
volume = {884},
pages = {68--115},
year = {2021},
url = {https://doi.org/10.1016/j.tcs.2021.07.026},
doi = {10.1016/J.TCS.2021.07.026},
timestamp = {Wed, 01 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BehrKAM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-03292,
author = {Jakob L. Andersen and
Rolf Fagerberg and
Christoph Flamm and
Walter Fontana and
Juraj Kolc{\'{a}}k and
Christophe V. F. P. Laurent and
Daniel Merkle and
Nikolai N{\o}jgaard},
title = {Graph Transformation for Enzymatic Mechanisms},
journal = {CoRR},
volume = {abs/2102.03292},
year = {2021},
url = {https://arxiv.org/abs/2102.03292},
eprinttype = {arXiv},
eprint = {2102.03292},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-03292.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02573,
author = {Nicolas Behr and
Jean Krivine and
Jakob L. Andersen and
Daniel Merkle},
title = {Rewriting Theory for the Life Sciences: {A} Unifying Theory of {CTMC}
Semantics (Long version)},
journal = {CoRR},
volume = {abs/2106.02573},
year = {2021},
url = {https://arxiv.org/abs/2106.02573},
eprinttype = {arXiv},
eprint = {2106.02573},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02573.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-03086,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Defining Autocatalysis in Chemical Reaction Networks},
journal = {CoRR},
volume = {abs/2107.03086},
year = {2021},
url = {https://arxiv.org/abs/2107.03086},
eprinttype = {arXiv},
eprint = {2107.03086},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-03086.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-04077,
author = {Nikolai N{\o}jgaard and
Walter Fontana and
Marc Hellmuth and
Daniel Merkle},
title = {Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry},
journal = {CoRR},
volume = {abs/2108.04077},
year = {2021},
url = {https://arxiv.org/abs/2108.04077},
eprinttype = {arXiv},
eprint = {2108.04077},
timestamp = {Wed, 11 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-04077.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AndersenMR20,
author = {Jakob L. Andersen and
Daniel Merkle and
Peter S. Rasmussen},
title = {Combining Graph Transformations and Semigroups for Isotopic Labeling
Design},
journal = {J. Comput. Biol.},
volume = {27},
number = {2},
pages = {269--287},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0291},
doi = {10.1089/CMB.2019.0291},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AndersenMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jea/AndersenM20,
author = {Jakob L. Andersen and
Daniel Merkle},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
journal = {{ACM} J. Exp. Algorithmics},
volume = {25},
pages = {1--26},
year = {2020},
url = {https://doi.org/10.1145/3356020},
doi = {10.1145/3356020},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jea/AndersenM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/HellmuthMN20,
author = {Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard},
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {Atom Tracking Using Cayley Graphs},
booktitle = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
pages = {406--415},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3\_41},
doi = {10.1007/978-3-030-57821-3\_41},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/HellmuthMN20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sofsem/AndersenHMNP20,
author = {Jakob Lykke Andersen and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Marco Peressotti},
editor = {Yannis Manolopoulos and
George A. Papadopoulos and
Theodoros Tzouramanis},
title = {A Graph-Based Tool to Embed the {\(\pi\)}-Calculus into a Computational
{DPO} Framework},
booktitle = {Proceedings of the {SOFSEM} 2020 Doctoral Student Research Forum co-located
with the 46th International Conference on Current Trends in Theory
and Practice of Computer Science {(SOFSEM} 2020), Limassol, Cyprus,
January 20-24, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2568},
pages = {121--132},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2568/paper11.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:30 +0100},
biburl = {https://dblp.org/rec/conf/sofsem/AndersenHMNP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AndersenFMS19,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {2},
pages = {510--523},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2017.2781724},
doi = {10.1109/TCBB.2017.2781724},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AndersenFMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/AndersenMR19,
author = {Jakob L. Andersen and
Daniel Merkle and
Peter S. Rasmussen},
editor = {Zhipeng Cai and
Pavel Skums and
Min Li},
title = {Graph Transformations, Semigroups, and Isotopic Labeling},
booktitle = {Bioinformatics Research and Applications - 15th International Symposium,
{ISBRA} 2019, Barcelona, Spain, June 3-6, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11490},
pages = {196--207},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-20242-2\_17},
doi = {10.1007/978-3-030-20242-2\_17},
timestamp = {Thu, 20 Aug 2020 15:54:47 +0200},
biburl = {https://dblp.org/rec/conf/isbra/AndersenMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-00407,
author = {Jakob Lykke Andersen and
Marc Hellmuth and
Daniel Merkle and
Nikolai N{\o}jgaard and
Marco Peressotti},
title = {A Graph-Based Tool to Embed the {\(\pi\)}-Calculus into a Computational
{DPO} Framework},
journal = {CoRR},
volume = {abs/1911.00407},
year = {2019},
url = {http://arxiv.org/abs/1911.00407},
eprinttype = {arXiv},
eprint = {1911.00407},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-00407.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/NojgaardGMSWH18,
author = {Nikolai N{\o}jgaard and
Manuela Gei{\ss} and
Daniel Merkle and
Peter F. Stadler and
Nicolas Wieseke and
Marc Hellmuth},
title = {Time-consistent reconciliation maps and forbidden time travel},
journal = {Algorithms Mol. Biol.},
volume = {13},
number = {1},
pages = {2:1--2:17},
year = {2018},
url = {https://doi.org/10.1186/s13015-018-0121-8},
doi = {10.1186/S13015-018-0121-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/NojgaardGMSWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/FagerbergFKMS18,
author = {Rolf Fagerberg and
Christoph Flamm and
Rojin Kianian and
Daniel Merkle and
Peter F. Stadler},
title = {Finding the {K} best synthesis plans},
journal = {J. Cheminformatics},
volume = {10},
number = {1},
pages = {19:1--19:21},
year = {2018},
url = {https://doi.org/10.1186/s13321-018-0273-z},
doi = {10.1186/S13321-018-0273-Z},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/FagerbergFKMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/HansenLMM18,
author = {Bjarke N. Hansen and
Kim S. Larsen and
Daniel Merkle and
Alexei Mihalchuk},
title = {DNA-templated synthesis optimization},
journal = {Nat. Comput.},
volume = {17},
number = {4},
pages = {693--707},
year = {2018},
url = {https://doi.org/10.1007/s11047-018-9697-7},
doi = {10.1007/S11047-018-9697-7},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nc/HansenLMM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alenex/AndersenM18,
author = {Jakob L. Andersen and
Daniel Merkle},
editor = {Rasmus Pagh and
Suresh Venkatasubramanian},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
booktitle = {Proceedings of the Twentieth Workshop on Algorithm Engineering and
Experiments, {ALENEX} 2018, New Orleans, LA, USA, January 7-8, 2018},
pages = {139--153},
publisher = {{SIAM}},
year = {2018},
url = {https://doi.org/10.1137/1.9781611975055.13},
doi = {10.1137/1.9781611975055.13},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alenex/AndersenM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alenex/HellmuthKKMN18,
author = {Marc Hellmuth and
Anders S. Knudsen and
Michal Kotrbc{\'{\i}}k and
Daniel Merkle and
Nikolai N{\o}jgaard},
editor = {Rasmus Pagh and
Suresh Venkatasubramanian},
title = {Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face
Embeddings},
booktitle = {Proceedings of the Twentieth Workshop on Algorithm Engineering and
Experiments, {ALENEX} 2018, New Orleans, LA, USA, January 7-8, 2018},
pages = {154--168},
publisher = {{SIAM}},
year = {2018},
url = {https://doi.org/10.1137/1.9781611975055.14},
doi = {10.1137/1.9781611975055.14},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alenex/HellmuthKKMN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/NojgaardEMWH18,
author = {Nikolai N{\o}jgaard and
Nadia El{-}Mabrouk and
Daniel Merkle and
Nicolas Wieseke and
Marc Hellmuth},
editor = {Lusheng Wang and
Daming Zhu},
title = {Partial Homology Relations - Satisfiability in Terms of Di-Cographs},
booktitle = {Computing and Combinatorics - 24th International Conference, {COCOON}
2018, Qing Dao, China, July 2-4, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10976},
pages = {403--415},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94776-1\_34},
doi = {10.1007/978-3-319-94776-1\_34},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/NojgaardEMWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/HansenLMM17,
author = {Bjarke N. Hansen and
Kim S. Larsen and
Daniel Merkle and
Alexei Mihalchuk},
editor = {Robert Brijder and
Lulu Qian},
title = {DNA-Templated Synthesis Optimization},
booktitle = {{DNA} Computing and Molecular Programming - 23rd International Conference,
{DNA} 23, Austin, TX, USA, September 24-28, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10467},
pages = {17--32},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-66799-7\_2},
doi = {10.1007/978-3-319-66799-7\_2},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dna/HansenLMM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gg/AndersenFMS17,
author = {Jakob Lykke Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Juan de Lara and
Detlef Plump},
title = {Chemical Graph Transformation with Stereo-Information},
booktitle = {Graph Transformation - 10th International Conference, {ICGT} 2017,
Held as Part of {STAF} 2017, Marburg, Germany, July 18-19, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10373},
pages = {54--69},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-61470-0\_4},
doi = {10.1007/978-3-319-61470-0\_4},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gg/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NojgaardGMSWH17,
author = {Nikolai N{\o}jgaard and
Manuela Gei{\ss} and
Daniel Merkle and
Peter F. Stadler and
Nicolas Wieseke and
Marc Hellmuth},
editor = {Russell Schwartz and
Knut Reinert},
title = {Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation
Maps},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {17:1--17:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.17},
doi = {10.4230/LIPICS.WABI.2017.17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NojgaardGMSWH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS17,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {An Intermediate Level of Abstraction for Computational Systems Chemistry},
journal = {CoRR},
volume = {abs/1701.09097},
year = {2017},
url = {http://arxiv.org/abs/1701.09097},
eprinttype = {arXiv},
eprint = {1701.09097},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/NojgaardGSMWH17,
author = {Nikolai N{\o}jgaard and
Manuela Gei{\ss} and
Peter F. Stadler and
Daniel Merkle and
Nicolas Wieseke and
Marc Hellmuth},
title = {Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation
Maps},
journal = {CoRR},
volume = {abs/1705.02179},
year = {2017},
url = {http://arxiv.org/abs/1705.02179},
eprinttype = {arXiv},
eprint = {1705.02179},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/NojgaardGSMWH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-00504,
author = {Nikolai N{\o}jgaard and
Nadia El{-}Mabrouk and
Daniel Merkle and
Nicolas Wieseke and
Marc Hellmuth},
title = {Partial Orthology, Paralogy and Xenology Relations - Satisfiability
in terms of Di-Cographs},
journal = {CoRR},
volume = {abs/1711.00504},
year = {2017},
url = {http://arxiv.org/abs/1711.00504},
eprinttype = {arXiv},
eprint = {1711.00504},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-00504.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-08289,
author = {Jakob L. Andersen and
Daniel Merkle},
title = {A Generic Framework for Engineering Graph Canonization Algorithms},
journal = {CoRR},
volume = {abs/1711.08289},
year = {2017},
url = {http://arxiv.org/abs/1711.08289},
eprinttype = {arXiv},
eprint = {1711.08289},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-08289.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-02594,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows},
journal = {CoRR},
volume = {abs/1712.02594},
year = {2017},
url = {http://arxiv.org/abs/1712.02594},
eprinttype = {arXiv},
eprint = {1712.02594},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-02594.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AndersenFMS17,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Algorithmic Cheminformatics (Dagstuhl Seminar 17452)},
journal = {Dagstuhl Reports},
volume = {7},
number = {11},
pages = {28--45},
year = {2017},
url = {https://doi.org/10.4230/DagRep.7.11.28},
doi = {10.4230/DAGREP.7.11.28},
timestamp = {Thu, 29 Mar 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AndersenFMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gg/AndersenFMS16,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Rachid Echahed and
Mark Minas},
title = {A Software Package for Chemically Inspired Graph Transformation},
booktitle = {Graph Transformation - 9th International Conference, {ICGT} 2016,
in Memory of Hartmut Ehrig, Held as Part of {STAF} 2016, Vienna, Austria,
July 5-6, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9761},
pages = {73--88},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-40530-8\_5},
doi = {10.1007/978-3-319-40530-8\_5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gg/AndersenFMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gg/FlammMST16,
author = {Christoph Flamm and
Daniel Merkle and
Peter F. Stadler and
Uffe Thorsen},
editor = {Rachid Echahed and
Mark Minas},
title = {Automatic Inference of Graph Transformation Rules Using the Cyclic
Nature of Chemical Reactions},
booktitle = {Graph Transformation - 9th International Conference, {ICGT} 2016,
in Memory of Hartmut Ehrig, Held as Part of {STAF} 2016, Vienna, Austria,
July 5-6, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9761},
pages = {206--222},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-40530-8\_13},
doi = {10.1007/978-3-319-40530-8\_13},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gg/FlammMST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS16,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {A Software Package for Chemically Inspired Graph Transformation},
journal = {CoRR},
volume = {abs/1603.02481},
year = {2016},
url = {http://arxiv.org/abs/1603.02481},
eprinttype = {arXiv},
eprint = {1603.02481},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/FlammMST16,
author = {Christoph Flamm and
Daniel Merkle and
Peter F. Stadler and
Uffe Thorsen},
title = {Automatic Inference of Graph Transformation Rules Using the Cyclic
Nature of Chemical Reactions},
journal = {CoRR},
volume = {abs/1604.06379},
year = {2016},
url = {http://arxiv.org/abs/1604.06379},
eprinttype = {arXiv},
eprint = {1604.06379},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/FlammMST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijaacs/MerkleMS15,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Task allocation in organic computing systems: networks with reconfigurable
helper units},
journal = {Int. J. Auton. Adapt. Commun. Syst.},
volume = {8},
number = {1},
pages = {60--80},
year = {2015},
url = {https://doi.org/10.1504/IJAACS.2015.067695},
doi = {10.1504/IJAACS.2015.067695},
timestamp = {Sun, 30 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijaacs/MerkleMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijuc/AndersenFHM15,
author = {Jakob L. Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle},
title = {Towards Optimal DNA-Templated Computing},
journal = {Int. J. Unconv. Comput.},
volume = {11},
number = {3-4},
pages = {185--203},
year = {2015},
url = {http://www.oldcitypublishing.com/journals/ijuc-home/ijuc-issue-contents/ijuc-volume-11-number-3-4-2015/ijuc-11-3-4-p-185-203/},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijuc/AndersenFHM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/AndersenFMS15,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Support for Eschenmoser's Glyoxylate Scenario},
journal = {CoRR},
volume = {abs/1502.07555},
year = {2015},
url = {http://arxiv.org/abs/1502.07555},
eprinttype = {arXiv},
eprint = {1502.07555},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AndersenFMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/AndersenFMS14,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Generic strategies for chemical space exploration},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {7},
number = {2/3},
pages = {225--258},
year = {2014},
url = {https://doi.org/10.1504/IJCBDD.2014.061649},
doi = {10.1504/IJCBDD.2014.061649},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/AndersenFMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alife/AndersenFHM14,
author = {Jakob L. Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle},
title = {Towards an Optimal DNA-Templated Molecular Assembler},
booktitle = {Fourteenth International Conference on the Simulation and Synthesis
of Living Systems, {ALIFE} 2014, New York, NY, USA, July 30 - August
2, 2014},
pages = {557--564},
publisher = {{MIT} Press},
year = {2014},
url = {https://doi.org/10.7551/978-0-262-32621-6-ch090},
doi = {10.7551/978-0-262-32621-6-CH090},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alife/AndersenFHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fmmb/AndersenFMS14,
author = {Jakob Lykke Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
editor = {Fran{\c{c}}ois Fages and
Carla Piazza},
title = {50 Shades of Rule Composition - From Chemical Reactions to Higher
Levels of Abstraction},
booktitle = {Formal Methods in Macro-Biology - First International Conference,
{FMMB} 2014, Noum{\'{e}}a, New Caledonia, September 22-24, 2014.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8738},
pages = {117--135},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10398-3\_9},
doi = {10.1007/978-3-319-10398-3\_9},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/fmmb/AndersenFMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icfp/HargreavesMS14,
author = {Felix Palludan Hargreaves and
Daniel Merkle and
Peter Schneider{-}Kamp},
editor = {Jost Berthold and
Mary Sheeran and
Ryan Newton},
title = {Group communication patterns for high performance computing in scala},
booktitle = {Proceedings of the 3rd {ACM} {SIGPLAN} workshop on Functional high-performance
computing, FHPC@ICFP 2014, Gothenburg, Sweden, September 4, 2014},
pages = {75--85},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2636228.2636229},
doi = {10.1145/2636228.2636229},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icfp/HargreavesMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HargreavesMS14,
author = {Felix Palludan Hargreaves and
Daniel Merkle and
Peter Schneider{-}Kamp},
title = {Group Communication Patterns for High Performance Computing in Scala},
journal = {CoRR},
volume = {abs/1406.6163},
year = {2014},
url = {http://arxiv.org/abs/1406.6163},
eprinttype = {arXiv},
eprint = {1406.6163},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HargreavesMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BanzhafFMS14,
author = {Wolfgang Banzhaf and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Algorithmic Cheminformatics (Dagstuhl Seminar 14452)},
journal = {Dagstuhl Reports},
volume = {4},
number = {11},
pages = {22--39},
year = {2014},
url = {https://doi.org/10.4230/DagRep.4.11.22},
doi = {10.4230/DAGREP.4.11.22},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BanzhafFMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/AndersenAFHMS13,
author = {Jakob L. Andersen and
Tommy Andersen and
Christoph Flamm and
Martin M. Hanczyc and
Daniel Merkle and
Peter F. Stadler},
title = {Navigating the Chemical Space of {HCN} Polymerization and Hydrolysis:
Guiding Graph Grammars by Mass Spectrometry Data},
journal = {Entropy},
volume = {15},
number = {10},
pages = {4066--4083},
year = {2013},
url = {https://doi.org/10.3390/e15104066},
doi = {10.3390/E15104066},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/entropy/AndersenAFHMS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijicc/ScheidlerMM13,
author = {Alexander Scheidler and
Daniel Merkle and
Martin Middendorf},
title = {Swarm controlled emergence for ant clustering},
journal = {Int. J. Intell. Comput. Cybern.},
volume = {6},
number = {1},
pages = {62--82},
year = {2013},
url = {https://doi.org/10.1108/17563781311301526},
doi = {10.1108/17563781311301526},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijicc/ScheidlerMM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mics/FagerbergFMPS13,
author = {Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Philipp Peters and
Peter F. Stadler},
title = {On the Complexity of Reconstructing Chemical Reaction Networks},
journal = {Math. Comput. Sci.},
volume = {7},
number = {3},
pages = {275--292},
year = {2013},
url = {https://doi.org/10.1007/s11786-013-0160-y},
doi = {10.1007/S11786-013-0160-Y},
timestamp = {Wed, 12 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mics/FagerbergFMPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecal/FlammHM13,
author = {Christoph Flamm and
Chris Hemmingsen and
Daniel Merkle},
editor = {Pietro Li{\`{o}} and
Orazio Miglino and
Giuseppe Nicosia and
Stefano Nolfi and
Mario Pavone},
title = {Barrier Trees for Metabolic Adjustment Landscapes},
booktitle = {Proceedings of the Twelfth European Conference on the Synthesis and
Simulation of Living Systems: Advances in Artificial Life, {ECAL}
2013, Sicily, Italy, September 2-6, 2013},
pages = {1151--1158},
publisher = {{MIT} Press},
year = {2013},
url = {https://doi.org/10.7551/978-0-262-31709-2-ch175},
doi = {10.7551/978-0-262-31709-2-CH175},
timestamp = {Thu, 07 Jul 2022 14:54:16 +0200},
biburl = {https://dblp.org/rec/conf/ecal/FlammHM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppam/HargreavesM13,
author = {Felix Palludan Hargreaves and
Daniel Merkle},
editor = {Roman Wyrzykowski and
Jack J. Dongarra and
Konrad Karczewski and
Jerzy Wasniewski},
title = {FooPar: {A} Functional Object Oriented Parallel Framework in Scala},
booktitle = {Parallel Processing and Applied Mathematics - 10th International Conference,
{PPAM} 2013, Warsaw, Poland, September 8-11, 2013, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8385},
pages = {118--129},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-55195-6\_11},
doi = {10.1007/978-3-642-55195-6\_11},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/ppam/HargreavesM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-4006,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Generic Strategies for Chemical Space Exploration},
journal = {CoRR},
volume = {abs/1302.4006},
year = {2013},
url = {http://arxiv.org/abs/1302.4006},
eprinttype = {arXiv},
eprint = {1302.4006},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-4006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1304-2550,
author = {Felix Palludan Hargreaves and
Daniel Merkle},
title = {FooPar: {A} Functional Object Oriented Parallel Framework in Scala},
journal = {CoRR},
volume = {abs/1304.2550},
year = {2013},
url = {http://arxiv.org/abs/1304.2550},
eprinttype = {arXiv},
eprint = {1304.2550},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1304-2550.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/FagerbergFMPS13,
author = {Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Philipp Peters and
Peter F. Stadler},
title = {On the Complexity of Reconstructing Chemical Reaction Networks},
journal = {CoRR},
volume = {abs/1309.7198},
year = {2013},
url = {http://arxiv.org/abs/1309.7198},
eprinttype = {arXiv},
eprint = {1309.7198},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/FagerbergFMPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cp/FagerbergFMP12,
author = {Rolf Fagerberg and
Christoph Flamm and
Daniel Merkle and
Philipp Peters},
editor = {Michela Milano},
title = {Exploring Chemistry Using {SMT}},
booktitle = {Principles and Practice of Constraint Programming - 18th International
Conference, {CP} 2012, Qu{\'{e}}bec City, QC, Canada, October
8-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7514},
pages = {900--915},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33558-7\_64},
doi = {10.1007/978-3-642-33558-7\_64},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/cp/FagerbergFMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1208-3153,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Inferring Chemical Reaction Patterns Using Rule Composition in Graph
Grammars},
journal = {CoRR},
volume = {abs/1208.3153},
year = {2012},
url = {http://arxiv.org/abs/1208.3153},
eprinttype = {arXiv},
eprint = {1208.3153},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1208-3153.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/BerntCCCMWCM11,
author = {Matthias Bernt and
Kuan{-}Yu Chen and
Ming{-}Chiang Chen and
An{-}Chiang Chu and
Daniel Merkle and
Hung{-}Lung Wang and
Kun{-}Mao Chao and
Martin Middendorf},
title = {Finding all sorting tandem duplication random loss operations},
journal = {J. Discrete Algorithms},
volume = {9},
number = {1},
pages = {32--48},
year = {2011},
url = {https://doi.org/10.1016/j.jda.2010.09.006},
doi = {10.1016/J.JDA.2010.09.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jda/BerntCCCMWCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/Muller2011/ScheidlerBDMM11,
author = {Alexander Scheidler and
Arne Brutschy and
Konrad Diwold and
Daniel Merkle and
Martin Middendorf},
editor = {Christian M{\"{u}}ller{-}Schloer and
Hartmut Schmeck and
Theo Ungerer},
title = {Ant Inspired Methods for Organic Computing},
booktitle = {Organic Computing - {A} Paradigm Shift for Complex Systems},
pages = {95--109},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-0348-0130-0\_6},
doi = {10.1007/978-3-0348-0130-0\_6},
timestamp = {Tue, 16 May 2017 14:01:44 +0200},
biburl = {https://dblp.org/rec/books/sp/Muller2011/ScheidlerBDMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1110-6051,
author = {Jakob L. Andersen and
Christoph Flamm and
Daniel Merkle and
Peter F. Stadler},
title = {Maximizing Output and Recognizing Autocatalysis in Chemical Reaction
Networks is NP-Complete},
journal = {CoRR},
volume = {abs/1110.6051},
year = {2011},
url = {http://arxiv.org/abs/1110.6051},
eprinttype = {arXiv},
eprint = {1110.6051},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1110-6051.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MerkleMW10,
author = {Daniel Merkle and
Martin Middendorf and
Nicolas Wieseke},
title = {A parameter-adaptive dynamic programming approach for inferring cophylogenies},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-1}},
pages = {60},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S1-S60},
doi = {10.1186/1471-2105-11-S1-S60},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MerkleMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alife/Midtgaard-OlesenBM10,
author = {Jacob Midtgaard{-}Olesen and
Carsten Baldauf and
Daniel Merkle},
editor = {Harold Fellermann and
Mark D{\"{o}}rr and
Martin M. Hanczyc and
Lone Ladegaard Laursen and
Sarah Elizabeth Maurer and
Daniel Merkle and
Pierre{-}Alain Monnard and
Kasper St{\o}y and
Steen Rasmussen},
title = {Barrier Trees for Continuous Fitness Landscapes},
booktitle = {Proceedings of the Twelfth International Conference on the Synthesis
and Simulation of Living Systems, {ALIFE} 2010, Odense, Denmark, August
19-23, 2010},
pages = {368--369},
publisher = {{MIT} Press},
year = {2010},
url = {http://mitpress2.mit.edu/books/chapters/0262290758chap68.pdf},
timestamp = {Sun, 03 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/alife/Midtgaard-OlesenBM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/alife/2010,
editor = {Harold Fellermann and
Mark D{\"{o}}rr and
Martin M. Hanczyc and
Lone Ladegaard Laursen and
Sarah Elizabeth Maurer and
Daniel Merkle and
Pierre{-}Alain Monnard and
Kasper St{\o}y and
Steen Rasmussen},
title = {Proceedings of the Twelfth International Conference on the Synthesis
and Simulation of Living Systems, {ALIFE} 2010, Odense, Denmark, August
19-23, 2010},
publisher = {{MIT} Press},
year = {2010},
url = {http://mitpress.mit.edu/books/artificial-life-xii},
isbn = {9780262290753},
timestamp = {Fri, 08 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alife/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/advcs/DiwoldMM09,
author = {Konrad Diwold and
Daniel Merkle and
Martin Middendorf},
title = {Adapting to Dynamic Environments: Polyethism in Response Threshold
Models for Social Insects},
journal = {Adv. Complex Syst.},
volume = {12},
number = {3},
pages = {327--346},
year = {2009},
url = {https://doi.org/10.1142/S021952590900226X},
doi = {10.1142/S021952590900226X},
timestamp = {Thu, 08 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/advcs/DiwoldMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/advcs/KlemmMO09,
author = {Konstantin Klemm and
Daniel Merkle and
Eckehard Olbrich},
title = {Editorial: Artificial Life},
journal = {Adv. Complex Syst.},
volume = {12},
number = {3},
year = {2009},
url = {https://doi.org/10.1142/S0219525909002271},
doi = {10.1142/S0219525909002271},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/advcs/KlemmMO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/HellmuthMM09,
author = {Marc Hellmuth and
Daniel Merkle and
Martin Middendorf},
title = {Extended shapes for the combinatorial design of {RNA} sequences},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {2},
number = {4},
pages = {371--384},
year = {2009},
url = {https://doi.org/10.1504/IJCBDD.2009.030767},
doi = {10.1504/IJCBDD.2009.030767},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/HellmuthMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/swarm/DoernerMS09,
author = {Karl F. Doerner and
Daniel Merkle and
Thomas St{\"{u}}tzle},
title = {Special issue on ant colony optimization},
journal = {Swarm Intell.},
volume = {3},
number = {1},
pages = {1--2},
year = {2009},
url = {https://doi.org/10.1007/s11721-008-0025-1},
doi = {10.1007/S11721-008-0025-1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/swarm/DoernerMS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BerntCMWCM09,
author = {Matthias Bernt and
Ming{-}Chiang Chen and
Daniel Merkle and
Hung{-}Lung Wang and
Kun{-}Mao Chao and
Martin Middendorf},
editor = {Gregory Kucherov and
Esko Ukkonen},
title = {Finding All Sorting Tandem Duplication Random Loss Operations},
booktitle = {Combinatorial Pattern Matching, 20th Annual Symposium, {CPM} 2009,
Lille, France, June 22-24, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5577},
pages = {301--313},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02441-2\_27},
doi = {10.1007/978-3-642-02441-2\_27},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BerntCMWCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcbs/HellmuthMM09,
author = {Marc Hellmuth and
Daniel Merkle and
Martin Middendorf},
editor = {Joe Zhang and
Guo{-}Zheng Li and
Jack Y. Yang},
title = {On the Design of {RNA} Sequences for Realizing Extended Shapes},
booktitle = {International Joint Conferences on Bioinformatics, Systems Biology
and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
2009},
pages = {167--173},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/IJCBS.2009.73},
doi = {10.1109/IJCBS.2009.73},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcbs/HellmuthMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/asc/JansonMM08,
author = {Stefan Janson and
Daniel Merkle and
Martin Middendorf},
title = {Molecular docking with multi-objective Particle Swarm Optimization},
journal = {Appl. Soft Comput.},
volume = {8},
number = {1},
pages = {666--675},
year = {2008},
url = {https://doi.org/10.1016/j.asoc.2007.05.005},
doi = {10.1016/J.ASOC.2007.05.005},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/asc/JansonMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijicc/JansonMM08,
author = {Stefan Janson and
Daniel Merkle and
Martin Middendorf},
title = {A decentralization approach for swarm intelligence algorithms in networks
applied to multi swarm {PSO}},
journal = {Int. J. Intell. Comput. Cybern.},
volume = {1},
number = {1},
pages = {25--45},
year = {2008},
url = {https://doi.org/10.1108/17563780810857112},
doi = {10.1108/17563780810857112},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijicc/JansonMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmma/MerkleMS08,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Self-Organized Task Allocation for Service Tasks in Computing Systems
with Reconfigurable Components},
journal = {J. Math. Model. Algorithms},
volume = {7},
number = {2},
pages = {237--254},
year = {2008},
url = {https://doi.org/10.1007/s10852-008-9079-8},
doi = {10.1007/S10852-008-9079-8},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmma/MerkleMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spm/MerkleM08,
author = {Daniel Merkle and
Martin Middendorf},
title = {Swarm intelligence and signal processing {[DSP} Exploratory]},
journal = {{IEEE} Signal Process. Mag.},
volume = {25},
number = {6},
pages = {152--158},
year = {2008},
url = {https://doi.org/10.1109/MSP.2008.929839},
doi = {10.1109/MSP.2008.929839},
timestamp = {Mon, 25 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spm/MerkleM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BerntMM08,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
title = {Solving the Preserving Reversal Median Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {3},
pages = {332--347},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2008.39},
doi = {10.1109/TCBB.2008.39},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BerntMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tib/ScheidlerMM08,
author = {Alexander Scheidler and
Daniel Merkle and
Martin Middendorf},
title = {Stability and performance of ant queue inspired task partitioning
methods},
journal = {Theory Biosci.},
volume = {127},
number = {2},
pages = {149--161},
year = {2008},
url = {https://doi.org/10.1007/s12064-008-0033-0},
doi = {10.1007/S12064-008-0033-0},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tib/ScheidlerMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antsw/BrutschySMM08,
author = {Arne Brutschy and
Alexander Scheidler and
Daniel Merkle and
Martin Middendorf},
editor = {Marco Dorigo and
Mauro Birattari and
Christian Blum and
Maurice Clerc and
Thomas St{\"{u}}tzle and
Alan F. T. Winfield},
title = {Learning from House-Hunting Ants: Collective Decision-Making in Organic
Computing Systems},
booktitle = {Ant Colony Optimization and Swarm Intelligence, 6th International
Conference, {ANTS} 2008, Brussels, Belgium, September 22-24, 2008.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5217},
pages = {96--107},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87527-7\_9},
doi = {10.1007/978-3-540-87527-7\_9},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/antsw/BrutschySMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antsw/ScheidlerBMM08,
author = {Alexander Scheidler and
Christian Blum and
Daniel Merkle and
Martin Middendorf},
editor = {Marco Dorigo and
Mauro Birattari and
Christian Blum and
Maurice Clerc and
Thomas St{\"{u}}tzle and
Alan F. T. Winfield},
title = {Emergent Sorting in Networks of Router Agents},
booktitle = {Ant Colony Optimization and Swarm Intelligence, 6th International
Conference, {ANTS} 2008, Brussels, Belgium, September 22-24, 2008.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5217},
pages = {299--306},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87527-7\_30},
doi = {10.1007/978-3-540-87527-7\_30},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/antsw/ScheidlerBMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifip10/ScheidlerMM08,
author = {Alexander Scheidler and
Daniel Merkle and
Martin Middendorf},
editor = {Mike Hinchey and
Anastasia Pagnoni and
Franz J. Rammig and
Hartmut Schmeck},
title = {Congestion Control in Ant Like Moving Agent Systems},
booktitle = {Biologically-Inspired Collaborative Computing - {IFIP} 20th World
Computer Congress, Second {IFIP} {TC} 10 International Conference
on Biologically-Inspired Collaborative Computing, September 8-9, 2008,
Milano, Italy},
series = {{IFIP}},
volume = {268},
pages = {33--43},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-0-387-09655-1\_4},
doi = {10.1007/978-0-387-09655-1\_4},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ifip10/ScheidlerMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BerntMM08,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic
Tree},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {143--157},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_11},
doi = {10.1007/978-3-540-87989-3\_11},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BerntMM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/08/MerkleMS08,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
editor = {Rolf P. W{\"{u}}rtz},
title = {Self-adaptive Worker-Helper Systems with Self-Organized Task Allocation},
booktitle = {Organic Computing},
series = {Understanding Complex Systems},
pages = {221--239},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-77657-4\_10},
doi = {10.1007/978-3-540-77657-4\_10},
timestamp = {Fri, 12 Jul 2019 11:29:14 +0200},
biburl = {https://dblp.org/rec/books/sp/08/MerkleMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ncs/MerkleMS08,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
editor = {Christian Blum and
Daniel Merkle},
title = {Organic Computing and Swarm Intelligence},
booktitle = {Swarm Intelligence: Introduction and Applications},
series = {Natural Computing Series},
pages = {253--281},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-74089-6\_8},
doi = {10.1007/978-3-540-74089-6\_8},
timestamp = {Tue, 16 May 2017 14:24:38 +0200},
biburl = {https://dblp.org/rec/series/ncs/MerkleMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/ncs/2008swarm,
editor = {Christian Blum and
Daniel Merkle},
title = {Swarm Intelligence: Introduction and Applications},
series = {Natural Computing Series},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-74089-6},
doi = {10.1007/978-3-540-74089-6},
isbn = {978-3-540-74088-9},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/ncs/2008swarm.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerntMM07,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
title = {Using median sets for inferring phylogenetic trees},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {129--135},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl300},
doi = {10.1093/BIOINFORMATICS/BTL300},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerntMM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerntMRFPBSSM07,
author = {Matthias Bernt and
Daniel Merkle and
Kai Ramsch and
Guido Fritzsch and
Marleen Perseke and
Detlef Bernhard and
Martin Schlegel and
Peter F. Stadler and
Martin Middendorf},
title = {CREx: inferring genomic rearrangements based on common intervals},
journal = {Bioinform.},
volume = {23},
number = {21},
pages = {2957--2958},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm468},
doi = {10.1093/BIOINFORMATICS/BTM468},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerntMRFPBSSM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/BerntMM07,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
editor = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {A Fast and Exact Algorithm for the Perfect Reversal Median Problem},
booktitle = {Bioinformatics Research and Applications, Third International Symposium,
{ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4463},
pages = {305--316},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72031-7\_28},
doi = {10.1007/978-3-540-72031-7\_28},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/BerntMM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swis/MerkleMS07,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Swarm Controlled Emergence - Designing an Anti-Clustering Ant System},
booktitle = {2007 {IEEE} Swarm Intelligence Symposium, {SIS} 2007, Honolulu, Hawaii,
USA, April 1-5, 2007},
pages = {242--249},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/SIS.2007.367944},
doi = {10.1109/SIS.2007.367944},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/swis/MerkleMS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eor/MerkleM06,
author = {Daniel Merkle and
Martin Middendorf},
title = {Marco Dorigo and Thomas St{\"{u}}tzle, Ant Colony Optimization,
{MIT} Press {(2004)} {ISBN} 0-262-04219-3},
journal = {Eur. J. Oper. Res.},
volume = {168},
number = {1},
pages = {269--271},
year = {2006},
url = {https://doi.org/10.1016/j.ejor.2004.09.013},
doi = {10.1016/J.EJOR.2004.09.013},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/eor/MerkleM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jca/MerkleMS06,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Modeling Ant Brood ending Patterns with Cellular Automata},
journal = {J. Cell. Autom.},
volume = {1},
number = {2},
pages = {183--194},
year = {2006},
url = {http://www.oldcitypublishing.com/journals/jca-home/jca-issue-contents/jca-volume-1-number-2-2006/jca-1-2-p-183-194/},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jca/MerkleMS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BerntMM06,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
title = {Genome Rearrangement Based on Reversals that Preserve Conserved Intervals},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {3},
pages = {275--288},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.38},
doi = {10.1109/TCBB.2006.38},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BerntMM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/complife/BerntMM06,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
editor = {Michael R. Berthold and
Robert C. Glen and
Ingrid Fischer},
title = {The Reversal Median Problem, Common Intervals, and Mitochondrial Gene
Orders},
booktitle = {Computational Life Sciences II, Second International Symposium, CompLife
2006, Cambridge, UK, September 27-29, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4216},
pages = {52--63},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11875741\_6},
doi = {10.1007/11875741\_6},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/complife/BerntMM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eurongi/MerkleMS06,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
editor = {Hermann de Meer and
James P. G. Sterbenz},
title = {Using Decentralized Clustering for Task Allocation in Networks with
Reconfigurable Helper Units},
booktitle = {Self-Organizing Systems, First International Workshop, {IWSOS} 2006,
and Third International Workshop on New Trends in Network Architectures
and Services, EuroNGI 2006, Passau, Germany, September 18-20, 2006,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4124},
pages = {137--147},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11822035\_12},
doi = {10.1007/11822035\_12},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/eurongi/MerkleMS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MerkleMS06,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Self-organized task allocation for computing systems with reconfigurable
components},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639528},
doi = {10.1109/IPDPS.2006.1639528},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/MerkleMS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/MerkleMS05,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Decentralized packet clustering in router-based networks},
journal = {Int. J. Found. Comput. Sci.},
volume = {16},
number = {2},
pages = {321--341},
year = {2005},
url = {https://doi.org/10.1142/S0129054105003017},
doi = {10.1142/S0129054105003017},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfcs/MerkleMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijsysc/MerkleM05,
author = {Daniel Merkle and
Martin Middendorf},
title = {On solving permutation scheduling problems with ant colony optimization},
journal = {Int. J. Syst. Sci.},
volume = {36},
number = {5},
pages = {255--266},
year = {2005},
url = {https://doi.org/10.1080/00207720500062306},
doi = {10.1080/00207720500062306},
timestamp = {Wed, 22 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijsysc/MerkleM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ki/X05s,
author = {Daniel Merkle and
Christian Blum},
title = {Swarm Intelligence - An Optimization-Based Introduction},
journal = {K{\"{u}}nstliche Intell.},
volume = {19},
number = {4},
pages = {5--10},
year = {2005},
url = {http://www.kuenstliche-intelligenz.de/index.php?id=no-6408\&\#38;tx\_ki\_pi1\%5BshowUid\%5D=1113\&\#38;cHash=dd7291063b},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ki/X05s.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tib/MerkleM05,
author = {Daniel Merkle and
Martin Middendorf},
title = {Reconstruction of the cophylogenetic history of related phylogenetic
trees with divergence timing information},
journal = {Theory Biosci.},
volume = {123},
number = {4},
pages = {277--299},
year = {2005},
url = {https://doi.org/10.1016/j.thbio.2005.01.003},
doi = {10.1016/J.THBIO.2005.01.003},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tib/MerkleM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/MerkleMS05,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
editor = {Franz Rothlauf and
J{\"{u}}rgen Branke and
Stefano Cagnoni and
David W. Corne and
Rolf Drechsler and
Yaochu Jin and
Penousal Machado and
Elena Marchiori and
Juan Romero and
George D. Smith and
Giovanni Squillero},
title = {Dynamic Decentralized Packet Clustering in Networks},
booktitle = {Applications of Evolutionary Computing, EvoWorkshops 2005: EvoBIO,
EvoCOMNET, EvoHOT, EvoIASP, EvoMUSART, and EvoSTOC, Lausanne, Switzerland,
March 30 - April 1, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3449},
pages = {574--583},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32003-6\_60},
doi = {10.1007/978-3-540-32003-6\_60},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/MerkleMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hm/JansonM05,
author = {Stefan Janson and
Daniel Merkle},
editor = {Maria J. Blesa and
Christian Blum and
Andrea Roli and
Michael Sampels},
title = {A New Multi-objective Particle Swarm Optimization Algorithm Using
Clustering Applied to Automated Docking},
booktitle = {Hybrid Metaheuristics, Second International Workshop, {HM} 2005, Barcelona,
Spain, August 29-30, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3636},
pages = {128--141},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11546245\_12},
doi = {10.1007/11546245\_12},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/hm/JansonM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/MerkleMS05,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Modelling Ant Brood Tending Behavior with Cellular Automata},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3515},
pages = {412--419},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428848\_55},
doi = {10.1007/11428848\_55},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/MerkleMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppam/BerntMM05,
author = {Matthias Bernt and
Daniel Merkle and
Martin Middendorf},
editor = {Roman Wyrzykowski and
Jack J. Dongarra and
Norbert Meyer and
Jerzy Wasniewski},
title = {A Parallel Algorithm for Solving the Reversal Median Problem},
booktitle = {Parallel Processing and Applied Mathematics, 6th International Conference,
{PPAM} 2005, Poznan, Poland, September 11-14, 2005, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {3911},
pages = {1089--1096},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11752578\_132},
doi = {10.1007/11752578\_132},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ppam/BerntMM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/adb/MerkleM04,
author = {Daniel Merkle and
Martin Middendorf},
title = {Dynamic Polyethism and Competition for Tasks in Threshold Reinforcement
Models of Social Insects},
journal = {Adapt. Behav.},
volume = {12},
number = {3-4},
pages = {251--262},
year = {2004},
url = {https://doi.org/10.1177/105971230401200310},
doi = {10.1177/105971230401200310},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/adb/MerkleM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antsw/MerkleM04,
author = {Daniel Merkle and
Martin Middendorf},
editor = {Marco Dorigo and
Mauro Birattari and
Christian Blum and
Luca Maria Gambardella and
Francesco Mondada and
Thomas St{\"{u}}tzle},
title = {Competition Controlled Pheromone Update for Ant Colony Optimization},
booktitle = {Ant Colony Optimization and Swarm Intelligence, 4th International
Workshop, {ANTS} 2004, Brussels, Belgium, September 5 - 8, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3172},
pages = {95--105},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28646-2\_9},
doi = {10.1007/978-3-540-28646-2\_9},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/antsw/MerkleM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MerkleMS04,
author = {Daniel Merkle and
Martin Middendorf and
Alexander Scheidler},
title = {Decentralized Packet Clustering in Networks},
booktitle = {18th International Parallel and Distributed Processing Symposium {(IPDPS}
2004), {CD-ROM} / Abstracts Proceedings, 26-30 April 2004, Santa Fe,
New Mexico, {USA}},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/IPDPS.2004.1303157},
doi = {10.1109/IPDPS.2004.1303157},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/MerkleMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/apin/MerkleM03,
author = {Daniel Merkle and
Martin Middendorf},
title = {Ant Colony Optimization with Global Pheromone Evaluation for Scheduling
a Single Machine},
journal = {Appl. Intell.},
volume = {18},
number = {1},
pages = {105--111},
year = {2003},
url = {https://doi.org/10.1023/A:1020999407672},
doi = {10.1023/A:1020999407672},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/apin/MerkleM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/JansonMMES03,
author = {Stefan Janson and
Daniel Merkle and
Martin Middendorf and
Hossam A. ElGindy and
Hartmut Schmeck},
title = {On Enforced Convergence of {ACO} and its Implementation on the Reconfigurable
Mesh Architecture Using Size Reduction Tasks},
journal = {J. Supercomput.},
volume = {26},
number = {3},
pages = {221--238},
year = {2003},
url = {https://doi.org/10.1023/A:1025642930419},
doi = {10.1023/A:1025642930419},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/JansonMMES03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Merkle2002,
author = {Daniel Merkle},
title = {Ameisenalgorithmen: Optimierung und Modellierung},
school = {Karlsruhe Institute of Technology, Germany},
year = {2002},
url = {http://digbib.ubka.uni-karlsruhe.de/volltexte/30862002},
urn = {urn:nbn:de:swb:90-AAA308620026},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/de/Merkle2002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ec/MerkleM02,
author = {Daniel Merkle and
Martin Middendorf},
title = {Modeling the Dynamics of Ant Colony Optimization},
journal = {Evol. Comput.},
volume = {10},
number = {3},
pages = {235--262},
year = {2002},
url = {https://doi.org/10.1162/106365602760234090},
doi = {10.1162/106365602760234090},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ec/MerkleM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/MerkleW02,
author = {Daniel Merkle and
Thomas Worsch},
title = {Formal language recognition by stochastic cellular automata},
journal = {Fundam. Informaticae},
volume = {52},
number = {1-3},
pages = {183--201},
year = {2002},
url = {http://content.iospress.com/articles/fundamenta-informaticae/fi52-1-3-09},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/MerkleW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpem/MerkleM02,
author = {Daniel Merkle and
Martin Middendorf},
title = {Fast Ant Colony Optimization on Runtime Reconfigurable Processor Arrays},
journal = {Genet. Program. Evolvable Mach.},
volume = {3},
number = {4},
pages = {345--361},
year = {2002},
url = {https://doi.org/10.1023/A:1020936909085},
doi = {10.1023/A:1020936909085},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpem/MerkleM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tec/MerkleMS02,
author = {Daniel Merkle and
Martin Middendorf and
Hartmut Schmeck},
title = {Ant colony optimization for resource-constrained project scheduling},
journal = {{IEEE} Trans. Evol. Comput.},
volume = {6},
number = {4},
pages = {333--346},
year = {2002},
url = {https://doi.org/10.1109/TEVC.2002.802450},
doi = {10.1109/TEVC.2002.802450},
timestamp = {Tue, 12 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tec/MerkleMS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antalg/MerkleM02,
author = {Daniel Merkle and
Martin Middendorf},
editor = {Marco Dorigo and
Gianni Di Caro and
Michael Sampels},
title = {Modelling {ACO:} Composed Permutation Problems},
booktitle = {Ant Algorithms, Third International Workshop, {ANTS} 2002, Brussels,
Belgium, September 12-14, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2463},
pages = {149--162},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45724-0\_13},
doi = {10.1007/3-540-45724-0\_13},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/antalg/MerkleM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antalg/BrankeDMS02,
author = {J{\"{u}}rgen Branke and
Michael Decker and
Daniel Merkle and
Hartmut Schmeck},
editor = {Marco Dorigo and
Gianni Di Caro and
Michael Sampels},
title = {Coevolutionary Ant Algorithms Playing Games},
booktitle = {Ant Algorithms, Third International Workshop, {ANTS} 2002, Brussels,
Belgium, September 12-14, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2463},
pages = {298--299},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45724-0\_34},
doi = {10.1007/3-540-45724-0\_34},
timestamp = {Tue, 23 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/antalg/BrankeDMS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/MerkleM02,
author = {Daniel Merkle and
Martin Middendorf},
editor = {Stefano Cagnoni and
Jens Gottlieb and
Emma Hart and
Martin Middendorf and
G{\"{u}}nther R. Raidl},
title = {Ant Colony Optimization with the Relative Pheromone Evaluation Method},
booktitle = {Applications of Evolutionary Computing, EvoWorkshops 2002: EvoCOP,
EvoIASP, EvoSTIM/EvoPLAN, Kinsale, Ireland, April 3-4, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2279},
pages = {325--333},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-46004-7\_32},
doi = {10.1007/3-540-46004-7\_32},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/MerkleM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/MerkleM02,
author = {Daniel Merkle and
Martin Middendorf},
editor = {William B. Langdon and
Erick Cant{\'{u}}{-}Paz and
Keith E. Mathias and
Rajkumar Roy and
David Davis and
Riccardo Poli and
Karthik Balakrishnan and
Vasant G. Honavar and
G{\"{u}}nter Rudolph and
Joachim Wegener and
Larry Bull and
Mitchell A. Potter and
Alan C. Schultz and
Julian F. Miller and
Edmund K. Burke and
Natasa Jonoska},
title = {Studies On The Dynamics Of Ant Colony Optimization Algorithms},
booktitle = {{GECCO} 2002: Proceedings of the Genetic and Evolutionary Computation
Conference, New York, USA, 9-13 July 2002},
pages = {105--112},
publisher = {Morgan Kaufmann},
year = {2002},
timestamp = {Mon, 13 Nov 2017 18:15:11 +0100},
biburl = {https://dblp.org/rec/conf/gecco/MerkleM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emo/IrediMM01,
author = {Steffen Iredi and
Daniel Merkle and
Martin Middendorf},
editor = {Eckart Zitzler and
Kalyanmoy Deb and
Lothar Thiele and
Carlos A. Coello Coello and
David Corne},
title = {Bi-Criterion Optimization with Multi Colony Ant Algorithms},
booktitle = {Evolutionary Multi-Criterion Optimization, First International Conference,
{EMO} 2001, Zurich, Switzerland, March 7-9, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1993},
pages = {359--372},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44719-9\_25},
doi = {10.1007/3-540-44719-9\_25},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/emo/IrediMM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/MerkleM01,
author = {Daniel Merkle and
Martin Middendorf},
editor = {Egbert J. W. Boers and
Jens Gottlieb and
Pier Luca Lanzi and
Robert E. Smith and
Stefano Cagnoni and
Emma Hart and
G{\"{u}}nther R. Raidl and
H. Tijink},
title = {A New Approach to Solve Permutation Scheduling Problems with Ant Colony
Optimization},
booktitle = {Applications of Evolutionary Computing, EvoWorkshops 2001: EvoCOP,
EvoFlight, EvoIASP, EvoLearn, and EvoSTIM, Como, Italy, April 18-20,
2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2037},
pages = {484--494},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45365-2\_50},
doi = {10.1007/3-540-45365-2\_50},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/MerkleM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MerkleM01,
author = {Daniel Merkle and
Martin Middendorf},
title = {Fast ant colony optimization on reconfigurable processor arrays},
booktitle = {Proceedings of the 15th International Parallel {\&} Distributed
Processing Symposium (IPDPS-01), San Francisco, CA, USA, April 23-27,
2001},
pages = {144},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/IPDPS.2001.925130},
doi = {10.1109/IPDPS.2001.925130},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/MerkleM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/MerkleM00,
author = {Daniel Merkle and
Martin Middendorf},
editor = {Stefano Cagnoni and
Riccardo Poli and
Yun Li and
George D. Smith and
David Corne and
Martin J. Oates and
Emma Hart and
Pier Luca Lanzi and
Egbert J. W. Boers and
Ben Paechter and
Terence C. Fogarty},
title = {An Ant Algorithm with a New Pheromone Evaluation Rule for Total Tardiness
Problems},
booktitle = {Real-World Applications of Evolutionary Computing, EvoWorkshops 2000:
EvoIASP, EvoSCONDI, EvoTel, EvoSTIM, EvoROB, and EvoFlight, Edinburgh,
Scotland, UK, April 17, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1803},
pages = {287--296},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-45561-2\_28},
doi = {10.1007/3-540-45561-2\_28},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/MerkleM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/MerkleMS00,
author = {Daniel Merkle and
Martin Middendorf and
Hartmut Schmeck},
editor = {L. Darrell Whitley and
David E. Goldberg and
Erick Cant{\'{u}}{-}Paz and
Lee Spector and
Ian C. Parmee and
Hans{-}Georg Beyer},
title = {Ant Colony Optimization for Resource-Constrained Projet Scheduling},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference
{(GECCO} '00), Las Vegas, Nevada, USA, July 8-12, 2000},
pages = {893},
publisher = {Morgan Kaufmann},
year = {2000},
timestamp = {Wed, 21 Jul 2004 09:29:17 +0200},
biburl = {https://dblp.org/rec/conf/gecco/MerkleMS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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