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ORCIDBibTeX records: Giovanni Minervini
@article{DBLP:journals/bioinformatics/ConteMCCMTP23,
author = {Alessio Del Conte and
Alexander Miguel Monzon and
Damiano Clementel and
Giorgia F. Camagni and
Giovanni Minervini and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {RING-PyMOL: residue interaction networks of structural ensembles and
molecular dynamics},
journal = {Bioinform.},
volume = {39},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad260},
doi = {10.1093/BIOINFORMATICS/BTAD260},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ConteMCCMTP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PradelliMT22,
author = {Franco Pradelli and
Giovanni Minervini and
Silvio C. E. Tosatto},
title = {Mocafe: a comprehensive Python library for simulating cancer development
with Phase Field Models},
journal = {Bioinform.},
volume = {38},
number = {18},
pages = {4440--4441},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac521},
doi = {10.1093/BIOINFORMATICS/BTAC521},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PradelliMT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/QuagliaMSHPCPLP22,
author = {Federica Quaglia and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Edoardo Salladini and
Andr{\'{a}}s Hatos and
Rita Pancsa and
Luc{\'{\i}}a B. Chemes and
M{\'{a}}ty{\'{a}}s Pajkos and
Tamas Lazar and
Samuel Pe{\~{n}}a{-}D{\'{\i}}az and
Jaime Santos and
Veronika {\'{A}}cs and
Nazanin Farahi and
Erzs{\'{e}}bet Fich{\'{o}} and
Maria Cristina Aspromonte and
Claudio Bassot and
Anastasia Chasapi and
Norman E. Davey and
Radoslav Davidovic and
Laszlo Dobson and
Arne Elofsson and
G{\'{a}}bor Erd{\"{o}}s and
Pascale Gaudet and
Michelle G. Giglio and
Juliana Glavina and
Javier Iserte and
Valent{\'{\i}}n Iglesias and
Zs{\'{o}}fia L. K{\'{a}}lm{\'{a}}n and
Matteo Lambrughi and
Emanuela Leonardi and
Sonia Longhi and
Sandra Macedo{-}Ribeiro and
Emiliano Maiani and
Julia Marchetti and
Cristina Marino Buslje and
Attila Meszaros and
Alexander Miguel Monzon and
Giovanni Minervini and
Suvarna Nadendla and
Juliet F. Nilsson and
Mari{\'{a}}n Novotn{\'{y}} and
Christos A. Ouzounis and
Nicolas Palopoli and
Elena Papaleo and
Pedro J. Barbosa Pereira and
Gabriele Pozzati and
Vasilis J. Promponas and
Jordi Pujols and
Alma Carolina Sanchez Rocha and
Martin Salas and
Luciana Rodriguez Sawicki and
{\'{E}}va Sch{\'{a}}d and
Aditi Shenoy and
Tam{\'{a}}s Szaniszl{\'{o}} and
Konstantinos D. Tsirigos and
Nevena Veljkovic and
Gustavo D. Parisi and
Salvador Ventura and
Zsuzsanna Doszt{\'{a}}nyi and
Peter Tompa and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {DisProt in 2022: improved quality and accessibility of protein intrinsic
disorder annotation},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {480--487},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1082},
doi = {10.1093/NAR/GKAB1082},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/QuagliaMSHPCPLP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClementelCMCMPT22,
author = {Damiano Clementel and
Alessio Del Conte and
Alexander Miguel Monzon and
Giorgia F. Camagni and
Giovanni Minervini and
Damiano Piovesan and
Silvio C. E. Tosatto},
title = {{RING} 3.0: fast generation of probabilistic residue interaction networks
from structural ensembles},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {651--656},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac365},
doi = {10.1093/NAR/GKAC365},
timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ClementelCMCMPT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosHMPAFBBBCC20,
author = {Andr{\'{a}}s Hatos and
Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and
Alexander Miguel Monzon and
Nicolas Palopoli and
Luc{\'{\i}}a {\'{A}}lvarez and
Burcu Ayka{\c{c}} Fas and
Claudio Bassot and
Guillermo I. Ben{\'{\i}}tez and
Martina Bevilacqua and
Anastasia Chasapi and
Luc{\'{\i}}a B. Chemes and
Norman E. Davey and
Radoslav Davidovic and
A. Keith Dunker and
Arne Elofsson and
Julien Gobeill and
Nicol{\'{a}}s S. Gonz{\'{a}}lez Foutel and
Govindarajan Sudha and
Mainak Guharoy and
Tam{\'{a}}s Horv{\'{a}}th and
Valentin Iglesias and
Andrey V. Kajava and
Orsolya P. Kov{\'{a}}cs and
John Lamb and
Matteo Lambrughi and
Tamas Lazar and
Jeremy Y. Leclercq and
Emanuela Leonardi and
Sandra Macedo{-}Ribeiro and
Mauricio Macossay{-}Castillo and
Emiliano Maiani and
Jos{\'{e}} A. Manso and
Cristina Marino Buslje and
Elizabeth Mart{\'{\i}}nez{-}P{\'{e}}rez and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Ivan Micetic and
Giovanni Minervini and
Nikoletta Murvai and
Marco Necci and
Christos A. Ouzounis and
M{\'{a}}ty{\'{a}}s Pajkos and
Lisanna Paladin and
Rita Pancsa and
Elena Papaleo and
Gustavo D. Parisi and
Emilie Pasche and
Pedro J. Barbosa Pereira and
Vasilis J. Promponas and
Jordi Pujols and
Federica Quaglia and
Patrick Ruch and
Marco Salvatore and
{\'{E}}va Sch{\'{a}}d and
Be{\'{a}}ta Szab{\'{o}} and
Tam{\'{a}}s Szaniszl{\'{o}} and
Stella Tamana and
{\'{A}}gnes Tantos and
Nevena Veljkovic and
Salvador Ventura and
Wim F. Vranken and
Zsuzsanna Doszt{\'{a}}nyi and
Peter Tompa and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {DisProt: intrinsic protein disorder annotation in 2020},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D269--D276},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz975},
doi = {10.1093/NAR/GKZ975},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HatosHMPAFBBBCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PiovesanHMQMT20,
author = {Damiano Piovesan and
Andr{\'{a}}s Hatos and
Giovanni Minervini and
Federica Quaglia and
Alexander Miguel Monzon and
Silvio C. E. Tosatto},
title = {Assessing predictors for new post translational modification sites:
{A} case study on hydroxylation},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {6},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007967},
doi = {10.1371/JOURNAL.PCBI.1007967},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PiovesanHMQMT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MinerviniQTT19,
author = {Giovanni Minervini and
Federica Quaglia and
Francesco Tabaro and
Silvio C. E. Tosatto},
title = {Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor
inferred from a large-scale analysis of disease mutations and interactors},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {4},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1006478},
doi = {10.1371/JOURNAL.PCBI.1006478},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/MinerviniQTT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/CaprariMBP17,
author = {Silvia Caprari and
Giovanni Minervini and
Valentina Brandi and
Fabio Polticelli},
title = {In silico study of the structure and function of Streptococcus mutans
plasmidic proteins},
journal = {Bio Algorithms Med Syst.},
volume = {13},
number = {2},
pages = {51},
year = {2017},
url = {https://doi.org/10.1515/bams-2017-0012},
doi = {10.1515/BAMS-2017-0012},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bams/CaprariMBP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiovesanWMT17,
author = {Damiano Piovesan and
Ian Walsh and
Giovanni Minervini and
Silvio C. E. Tosatto},
title = {{FELLS:} fast estimator of latent local structure},
journal = {Bioinform.},
volume = {33},
number = {12},
pages = {1889--1891},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx085},
doi = {10.1093/BIOINFORMATICS/BTX085},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiovesanWMT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanTMNQOAD17,
author = {Damiano Piovesan and
Francesco Tabaro and
Ivan Micetic and
Marco Necci and
Federica Quaglia and
Christopher J. Oldfield and
Maria Cristina Aspromonte and
Norman E. Davey and
Radoslav Davidovic and
Zsuzsanna Doszt{\'{a}}nyi and
Arne Elofsson and
Alessandra Gasparini and
Andr{\'{a}}s Hatos and
Andrey V. Kajava and
Lajos Kalm{\'{a}}r and
Emanuela Leonardi and
Tamas Lazar and
Sandra Macedo{-}Ribeiro and
Mauricio Macossay{-}Castillo and
Attila Meszaros and
Giovanni Minervini and
Nikoletta Murvai and
Jordi Pujols and
Daniel B. Roche and
Edoardo Salladini and
{\'{E}}va Sch{\'{a}}d and
Antoine Schramm and
Be{\'{a}}ta Szab{\'{o}} and
{\'{A}}gnes Tantos and
Fiorella Tonello and
Konstantinos D. Tsirigos and
Nevena Veljkovic and
Salvador Ventura and
Wim F. Vranken and
Per Warholm and
Vladimir N. Uversky and
A. Keith Dunker and
Sonia Longhi and
Peter Tompa and
Silvio C. E. Tosatto},
title = {DisProt 7.0: a major update of the database of disordered proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D219--D227},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1056},
doi = {10.1093/NAR/GKW1056},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiovesanTMNQOAD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/asc/BorrottiMLP16,
author = {Matteo Borrotti and
Giovanni Minervini and
Davide De Lucrezia and
Irene Poli},
title = {Na{\"{\i}}ve Bayes ant colony optimization for designing high
dimensional experiments},
journal = {Appl. Soft Comput.},
volume = {49},
pages = {259--268},
year = {2016},
url = {https://doi.org/10.1016/j.asoc.2016.08.018},
doi = {10.1016/J.ASOC.2016.08.018},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/asc/BorrottiMLP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanMT16,
author = {Damiano Piovesan and
Giovanni Minervini and
Silvio C. E. Tosatto},
title = {The {RING} 2.0 web server for high quality residue interaction networks},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W367--W374},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw315},
doi = {10.1093/NAR/GKW315},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiovesanMT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DomenicoPWPGMPIFKT14,
author = {Tom{\'{a}}s Di Domenico and
Emilio Potenza and
Ian Walsh and
R. Gonzalo Parra and
Manuel Giollo and
Giovanni Minervini and
Damiano Piovesan and
Awais Ihsan and
Carlo Ferrari and
Andrey V. Kajava and
Silvio C. E. Tosatto},
title = {RepeatsDB: a database of tandem repeat protein structures},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {352--357},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1175},
doi = {10.1093/NAR/GKT1175},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DomenicoPWPGMPIFKT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshMCETF12,
author = {Ian Walsh and
Giovanni Minervini and
Alessandra Corazza and
Gennaro Esposito and
Silvio C. E. Tosatto and
Federico Fogolari},
title = {Bluues server: electrostatic properties of wild-type and mutated protein
structures},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2189--2190},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts343},
doi = {10.1093/BIOINFORMATICS/BTS343},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshMCETF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshSMDFT12,
author = {Ian Walsh and
Francesco Sirocco and
Giovanni Minervini and
Tom{\'{a}}s Di Domenico and
Carlo Ferrari and
Silvio C. E. Tosatto},
title = {{RAPHAEL:} recognition, periodicity and insertion assignment of solenoid
protein structures},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3257--3264},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts550},
doi = {10.1093/BIOINFORMATICS/BTS550},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshSMDFT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/GiolloMSLFT12,
author = {Manuel Giollo and
Giovanni Minervini and
Marta Scalzotto and
Emanuela Leonardi and
Carlo Ferrari and
Silvio C. E. Tosatto},
editor = {Christopher J. O. Baker and
Dietrich Rebholz{-}Schuhmann},
title = {In silico blood genotyping from exome sequencing data},
booktitle = {Proceedings of the Workshop on Annotation, Interpretation and Management
of Mutations, Basel, Switzerland, September 9, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {916},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-916/Paper5.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:35 +0100},
biburl = {https://dblp.org/rec/conf/eccb/GiolloMSLFT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/EvangelistaMPMS11,
author = {Giuseppe Evangelista and
Giovanni Minervini and
Fabio Polticelli and
Maciej Malawski and
Tomasz Szepieniec and
Lukasz Flis and
Katarzyna Prymula and
Marek Kochanczyk and
Ewa Matczynska and
Zdzislaw Wisniowski and
Kinga Salapa and
Mateusz Banach and
Irena Roterman},
title = {Ab initio protein structure prediction - the hydrophobicity distribution
analysis},
journal = {Bio Algorithms Med Syst.},
volume = {7},
number = {2},
pages = {5--12},
year = {2011},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bams/EvangelistaMPMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/antsw/BorrottiLMP10,
author = {Matteo Borrotti and
Davide De Lucrezia and
Giovanni Minervini and
Irene Poli},
editor = {Marco Dorigo and
Mauro Birattari and
Gianni A. Di Caro and
Ren{\'{e}} Doursat and
Andries P. Engelbrecht and
Dario Floreano and
Luca Maria Gambardella and
Roderich Gro{\ss} and
Erol Sahin and
Hiroki Sayama and
Thomas St{\"{u}}tzle},
title = {A Model Based Ant Colony Design for the Protein Engineering Problem},
booktitle = {Swarm Intelligence - 7th International Conference, {ANTS} 2010, Brussels,
Belgium, September 8-10, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6234},
pages = {352--359},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15461-4\_31},
doi = {10.1007/978-3-642-15461-4\_31},
timestamp = {Mon, 16 Aug 2021 17:13:22 +0200},
biburl = {https://dblp.org/rec/conf/antsw/BorrottiLMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MinerviniEVSLPLP09,
author = {Giovanni Minervini and
Giuseppe Evangelista and
Laura Villanova and
Debora Slanzi and
Davide De Lucrezia and
Irene Poli and
Pier Luigi Luisi and
Fabio Polticelli},
title = {Massive non-natural proteins structure prediction using grid technologies},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-6}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S6-S22},
doi = {10.1186/1471-2105-10-S6-S22},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MinerviniEVSLPLP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/EvangelistaMLP07,
author = {Giuseppe Evangelista and
Giovanni Minervini and
Pier Luigi Luisi and
Fabio Polticelli},
title = {RandomBlast a tool to generate random "never born protein"
sequences},
journal = {Bio Algorithms Med Syst.},
volume = {3},
number = {5},
pages = {27--31},
year = {2007},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bams/EvangelistaMLP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/MinerviniRLP07,
author = {Giovanni Minervini and
Giuseppe La Rocca and
Pier Luigi Luisi and
Fabio Polticelli},
title = {High throughput protein structure prediction in a grid environment},
journal = {Bio Algorithms Med Syst.},
volume = {3},
number = {5},
pages = {39--43},
year = {2007},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bams/MinerviniRLP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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