BibTeX records: Keiichiro Ono

download as .bib file

@article{DBLP:journals/bioinformatics/PillichCCFGIKLOPP23,
  author       = {Rudolf T. Pillich and
                  Jing Chen and
                  Christopher Churas and
                  Dylan Fong and
                  Benjamin M. Gyori and
                  Trey Ideker and
                  Klas Karis and
                  Sophie N. Liu and
                  Keiichiro Ono and
                  Alexander R. Pico and
                  Dexter Pratt},
  title        = {NDEx IQuery: a multi-method network gene set analysis leveraging the
                  Network Data Exchange},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {3},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad118},
  doi          = {10.1093/BIOINFORMATICS/BTAD118},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PillichCCFGIKLOPP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/DemchakOPBOSSMLLKTSMI18,
  author       = {Barry Demchak and
                  David Otasek and
                  Alexander R. Pico and
                  Gary D. Bader and
                  Keiichiro Ono and
                  Brett Settle and
                  Eric Sage and
                  John H. Morris and
                  William J. R. Longabaugh and
                  Christian Tannus Lopes and
                  Michael Kucera and
                  Adam Treister and
                  Benno Schwikowski and
                  Piet Molenaar and
                  Trey Ideker},
  title        = {The Cytoscape Automation app article collection},
  journal      = {F1000Research},
  volume       = {7},
  pages        = {800},
  year         = {2018},
  url          = {https://doi.org/10.12688/f1000research.15355.1},
  doi          = {10.12688/F1000RESEARCH.15355.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/DemchakOPBOSSMLLKTSMI18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SummerKORHD15,
  author       = {Georg Summer and
                  Thomas Kelder and
                  Keiichiro Ono and
                  Marijana Radonjic and
                  Stephane Heymans and
                  Barry Demchak},
  title        = {cyNeo4j: connecting Neo4j and Cytoscape},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {23},
  pages        = {3868--3869},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv460},
  doi          = {10.1093/BIOINFORMATICS/BTV460},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SummerKORHD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/OnoMKSD15,
  author       = {Keiichiro Ono and
                  Tanja Muetze and
                  Georgi Kolishovski and
                  Paul Shannon and
                  Barry Demchak},
  title        = {CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful
                  {API}},
  journal      = {F1000Research},
  volume       = {4},
  pages        = {478},
  year         = {2015},
  url          = {https://doi.org/10.12688/f1000research.6767.1},
  doi          = {10.12688/F1000RESEARCH.6767.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/OnoMKSD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/DutkowskiOKYPDI14,
  author       = {Janusz Dutkowski and
                  Keiichiro Ono and
                  Michael Kramer and
                  Michael Yu and
                  Dexter Pratt and
                  Barry Demchak and
                  Trey Ideker},
  title        = {NeXO Web: the NeXO ontology database and visualization platform},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {1269--1274},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1192},
  doi          = {10.1093/NAR/GKT1192},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/DutkowskiOKYPDI14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/PicoBDPHLLLMMMOSWI14,
  author       = {Alexander R. Pico and
                  Gary D. Bader and
                  Barry Demchak and
                  Oriol Guitart Pla and
                  Timothy Hull and
                  William J. R. Longabaugh and
                  Christian Tannus Lopes and
                  Samad Lotia and
                  Piet Molenaar and
                  Jason Montojo and
                  John H. Morris and
                  Keiichiro Ono and
                  Benno Schwikowski and
                  David Welker and
                  Trey Ideker},
  title        = {The Cytoscape app article collection},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {138},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.4642.1},
  doi          = {10.12688/F1000RESEARCH.4642.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/PicoBDPHLLLMMMOSWI14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/OnoDI14,
  author       = {Keiichiro Ono and
                  Barry Demchak and
                  Trey Ideker},
  title        = {Cytoscape tools for the web age: D3.js and Cytoscape.js exporters},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {143},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.4510.1},
  doi          = {10.12688/F1000RESEARCH.4510.1},
  timestamp    = {Fri, 08 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/OnoDI14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/NishidaOKT14,
  author       = {Kozo Nishida and
                  Keiichiro Ono and
                  Shigehiko Kanaya and
                  Koichi Takahashi},
  title        = {KEGGscape: a Cytoscape app for pathway data integration},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {144},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.4524.1},
  doi          = {10.12688/F1000RESEARCH.4524.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/NishidaOKT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/del-ToroDOJGLGBOSH13,
  author       = {Noemi del{-}Toro and
                  Marine Dumousseau and
                  Sandra E. Orchard and
                  Rafael C. Jim{\'{e}}nez and
                  Eugenia Galeota and
                  Guillaume Launay and
                  Johannes Goll and
                  Karin Breuer and
                  Keiichiro Ono and
                  Lukasz Salw{\'{\i}}nski and
                  Henning Hermjakob},
  title        = {A new reference implementation of the {PSICQUIC} web service},
  journal      = {Nucleic Acids Res.},
  volume       = {41},
  number       = {Webserver-Issue},
  pages        = {601--606},
  year         = {2013},
  url          = {https://doi.org/10.1093/nar/gkt392},
  doi          = {10.1093/NAR/GKT392},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/del-ToroDOJGLGBOSH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SmootORWI11,
  author       = {Michael E. Smoot and
                  Keiichiro Ono and
                  Johannes Ruscheinski and
                  Peng{-}Liang Wang and
                  Trey Ideker},
  title        = {Cytoscape 2.8: new features for data integration and network visualization},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {3},
  pages        = {431--432},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btq675},
  doi          = {10.1093/BIOINFORMATICS/BTQ675},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SmootORWI11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SmootOIM11,
  author       = {Michael E. Smoot and
                  Keiichiro Ono and
                  Trey Ideker and
                  Steven Maere},
  title        = {PiNGO: a Cytoscape plugin to find candidate genes in biological networks},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {7},
  pages        = {1030--1031},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr045},
  doi          = {10.1093/BIOINFORMATICS/BTR045},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SmootOIM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biomedsem/KatayamaWV11,
  author       = {Toshiaki Katayama and
                  Mark D. Wilkinson and
                  Rutger A. Vos and
                  Takeshi Kawashima and
                  Shuichi Kawashima and
                  Mitsuteru Nakao and
                  Yasunori Yamamoto and
                  Hong{-}Woo Chun and
                  Atsuko Yamaguchi and
                  Shin Kawano and
                  Jan Aerts and
                  Kiyoko F. Aoki{-}Kinoshita and
                  Kazuharu Arakawa and
                  Bruno Aranda and
                  Raoul Jean Pierre Bonnal and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Takatomo Fujisawa and
                  Paul M. K. Gordon and
                  Naohisa Goto and
                  Syed Haider and
                  Todd W. Harris and
                  Takashi Hatakeyama and
                  Isaac Ho and
                  Masumi Itoh and
                  Arek Kasprzyk and
                  Nobuhiro Kido and
                  Young{-}Joo Kim and
                  Akira R. Kinjo and
                  Fumikazu Konishi and
                  Yulia Kovarskaya and
                  Gregory Von Kuster and
                  Alberto Labarga and
                  Vachiranee Limviphuvadh and
                  E. Luke McCarthy and
                  Yasukazu Nakamura and
                  Yunsun Nam and
                  Kozo Nishida and
                  Kunihiro Nishimura and
                  Tatsuya Nishizawa and
                  Soichi Ogishima and
                  Tom Oinn and
                  Shinobu Okamoto and
                  Shujiro Okuda and
                  Keiichiro Ono and
                  Kazuki Oshita and
                  Keun{-}Joon Park and
                  Nicholas H. Putnam and
                  Martin Senger and
                  Jessica Severin and
                  Yasumasa Shigemoto and
                  Hideaki Sugawara and
                  James Taylor and
                  Oswaldo Trelles and
                  Chisato Yamasaki and
                  Riu Yamashita and
                  Noriyuki Satoh and
                  Toshihisa Takagi},
  title        = {The 2nd {DBCLS} BioHackathon: interoperable bioinformatics Web services
                  for integrated applications},
  journal      = {J. Biomed. Semant.},
  volume       = {2},
  pages        = {4},
  year         = {2011},
  url          = {https://doi.org/10.1186/2041-1480-2-4},
  doi          = {10.1186/2041-1480-2-4},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/KatayamaWV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/PentchevOHIK10,
  author       = {Konstantin Pentchev and
                  Keiichiro Ono and
                  Ralf Herwig and
                  Trey Ideker and
                  Atanas Kamburov},
  title        = {Evidence mining and novelty assessment of protein-protein interactions
                  with the ConsensusPathDB plugin for Cytoscape},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {21},
  pages        = {2796--2797},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq522},
  doi          = {10.1093/BIOINFORMATICS/BTQ522},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PentchevOHIK10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biomedsem/KatayamaAN10,
  author       = {Toshiaki Katayama and
                  Kazuharu Arakawa and
                  Mitsuteru Nakao and
                  Keiichiro Ono and
                  Kiyoko F. Aoki{-}Kinoshita and
                  Yasunori Yamamoto and
                  Atsuko Yamaguchi and
                  Shuichi Kawashima and
                  Hong{-}Woo Chun and
                  Jan Aerts and
                  Bruno Aranda and
                  Lord H. Barboza and
                  Raoul Jean Pierre Bonnal and
                  Richard M. Bruskiewich and
                  Jan Christian Bryne and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Akira Funahashi and
                  Paul M. K. Gordon and
                  Naohisa Goto and
                  Andreas Groscurth and
                  Alex Gutteridge and
                  Richard C. G. Holland and
                  Yoshinobu Kano and
                  Edward A. Kawas and
                  Arnaud Kerhornou and
                  Eri Kibukawa and
                  Akira R. Kinjo and
                  Michael Kuhn and
                  Hilmar Lapp and
                  Heikki Lehv{\"{a}}slaiho and
                  Hiroyuki Nakamura and
                  Yasukazu Nakamura and
                  Tatsuya Nishizawa and
                  Chikashi Nobata and
                  Tamotsu Noguchi and
                  Thomas M. Oinn and
                  Shinobu Okamoto and
                  Stuart Owen and
                  Evangelos Pafilis and
                  Matthew R. Pocock and
                  Pjotr Prins and
                  Ren{\'{e}} Ranzinger and
                  Florian Reisinger and
                  Lukasz Salw{\'{\i}}nski and
                  Mark J. Schreiber and
                  Martin Senger and
                  Yasumasa Shigemoto and
                  Daron M. Standley and
                  Hideaki Sugawara and
                  Toshiyuki Tashiro and
                  Oswaldo Trelles and
                  Rutger A. Vos and
                  Mark D. Wilkinson and
                  William S. York and
                  Christian M. Zmasek and
                  Kiyoshi Asai and
                  Toshihisa Takagi},
  title        = {The {DBCLS} BioHackathon: standardization and interoperability for
                  bioinformatics web services and workflows},
  journal      = {J. Biomed. Semant.},
  volume       = {1},
  pages        = {8},
  year         = {2010},
  url          = {https://doi.org/10.1186/2041-1480-1-8},
  doi          = {10.1186/2041-1480-1-8},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/KatayamaAN10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
a service of  Schloss Dagstuhl - Leibniz Center for Informatics

manage site settings

To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.