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ORCIDBibTeX records: Ian T. Paulsen
@article{DBLP:journals/nar/ElbourneTHP17,
author = {Liam D. H. Elbourne and
Sasha G. Tetu and
Karl A. Hassan and
Ian T. Paulsen},
title = {TransportDB 2.0: a database for exploring membrane transporters in
sequenced genomes from all domains of life},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D320--D324},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1068},
doi = {10.1093/NAR/GKW1068},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ElbourneTHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMSBBCFGK17,
author = {Ingrid M. Keseler and
Amanda Mackie and
Alberto Santos{-}Zavaleta and
Richard Billington and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ron Caspi and
Carol A. Fulcher and
Socorro Gama{-}Castro and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Mart{\'{\i}}n Peralta{-}Gil and
Pallavi Subhraveti and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Daniel S. Weaver and
Julio Collado{-}Vides and
Ian T. Paulsen and
Peter D. Karp},
title = {The EcoCyc database: reflecting new knowledge about Escherichia coli
{K-12}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D543--D550},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1003},
doi = {10.1093/NAR/GKW1003},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMSBBCFGK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeaverKMPK14,
author = {Daniel S. Weaver and
Ingrid M. Keseler and
Amanda Mackie and
Ian T. Paulsen and
Peter D. Karp},
title = {A genome-scale metabolic flux model of Escherichia coli {K-12} derived
from the EcoCyc database},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {79},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-79},
doi = {10.1186/1752-0509-8-79},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WeaverKMPK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13,
author = {Ingrid M. Keseler and
Amanda Mackie and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carol A. Fulcher and
Araceli M. Huerta and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Imke Schr{\"{o}}der and
Alexander Glennon Shearer and
Pallavi Subhraveti and
Michael Travers and
Deepika Weerasinghe and
Verena Weiss and
Julio Collado{-}Vides and
Robert P. Gunsalus and
Ian T. Paulsen and
Peter D. Karp},
title = {EcoCyc: fusing model organism databases with systems biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {605--612},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1027},
doi = {10.1093/NAR/GKS1027},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMPSGBFHKKLMOPSSSTWWCGPK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerCSPGMBPKAKSPLFSSMPGK11,
author = {Ingrid M. Keseler and
Julio Collado{-}Vides and
Alberto Santos{-}Zavaleta and
Mart{\'{\i}}n Peralta{-}Gil and
Socorro Gama{-}Castro and
Luis Mu{\~{n}}iz{-}Rascado and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Suzanne M. Paley and
Markus Krummenacker and
Tomer Altman and
Pallavi Kaipa and
Aaron Spaulding and
John Pacheco and
Mario Latendresse and
Carol A. Fulcher and
Malabika Sarker and
Alexander Glennon Shearer and
Amanda Mackie and
Ian T. Paulsen and
Robert P. Gunsalus and
Peter D. Karp},
title = {EcoCyc: a comprehensive database of \emph{Escherichia coli} biology},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {583--590},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1143},
doi = {10.1093/NAR/GKQ1143},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerCSPGMBPKAKSPLFSSMPGK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarpPKLDLKGSPAPKC10,
author = {Peter D. Karp and
Suzanne M. Paley and
Markus Krummenacker and
Mario Latendresse and
Joseph M. Dale and
Thomas J. Lee and
Pallavi Kaipa and
Fred Gilham and
Aaron Spaulding and
Liviu Popescu and
Tomer Altman and
Ian T. Paulsen and
Ingrid M. Keseler and
Ron Caspi},
title = {Pathway Tools version 13.0: integrated software for pathway/genome
informatics and systems biology},
journal = {Briefings Bioinform.},
volume = {11},
number = {1},
pages = {40--79},
year = {2010},
url = {https://doi.org/10.1093/bib/bbp043},
doi = {10.1093/BIB/BBP043},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KarpPKLDLKGSPAPKC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerBCGGJKNPPPSSK09,
author = {Ingrid M. Keseler and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides and
Socorro Gama{-}Castro and
Robert P. Gunsalus and
D. Aaron Johnson and
Markus Krummenacker and
Laura M. Nolan and
Suzanne M. Paley and
Ian T. Paulsen and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto D. Santos{-}Zavaleta and
Alexander Glennon Shearer and
Peter D. Karp},
title = {EcoCyc: {A} comprehensive view of \emph{Escherichia coli} biology},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {464--470},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn751},
doi = {10.1093/NAR/GKN751},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerBCGGJKNPPPSSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LeePK08,
author = {Thomas J. Lee and
Ian T. Paulsen and
Peter D. Karp},
title = {Annotation-based inference of transporter function},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {259--267},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn180},
doi = {10.1093/BIOINFORMATICS/BTN180},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/LeePK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RenCP07,
author = {Qinghu Ren and
Kaixi Chen and
Ian T. Paulsen},
title = {TransportDB: a comprehensive database resource for cytoplasmic membrane
transport systems and outer membrane channels},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {274--279},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl925},
doi = {10.1093/NAR/GKL925},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RenCP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerCGIPPPK05,
author = {Ingrid M. Keseler and
Julio Collado{-}Vides and
Socorro Gama{-}Castro and
John Ingraham and
Suzanne M. Paley and
Ian T. Paulsen and
Mart{\'{\i}}n Peralta{-}Gil and
Peter D. Karp},
title = {EcoCyc: a comprehensive database resource for \emph{Escherichia coli}},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {334--337},
year = {2005},
url = {https://doi.org/10.1093/nar/gki108},
doi = {10.1093/NAR/GKI108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerCGIPPPK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RenP05,
author = {Qinghu Ren and
Ian T. Paulsen},
title = {Comparative Analyses of Fundamental Differences in Membrane Transport
Capabilities in Prokaryotes and Eukaryotes},
journal = {PLoS Comput. Biol.},
volume = {1},
number = {3},
year = {2005},
url = {https://doi.org/10.1371/journal.pcbi.0010027},
doi = {10.1371/JOURNAL.PCBI.0010027},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RenP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RenKP04,
author = {Qinghu Ren and
Katherine H. Kang and
Ian T. Paulsen},
title = {TransportDB: a relational database of cellular membrane transport
systems},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {284--288},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh016},
doi = {10.1093/NAR/GKH016},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RenKP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KissingerGLPR03,
author = {Jessica C. Kissinger and
Bindu Gajria and
Li Li and
Ian T. Paulsen and
David S. Roos},
title = {ToxoDB: accessing the Toxoplasma gondii genome},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {234--236},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg072},
doi = {10.1093/NAR/GKG072},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KissingerGLPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarpRSPCPPBG03,
author = {Peter D. Karp and
Monica Riley and
Milton H. Saier Jr. and
Ian T. Paulsen and
Julio Collado{-}Vides and
Suzanne M. Paley and
Alida Pellegrini{-}Toole and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Socorro Gama{-}Castro},
title = {The EcoCyc Database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {56--58},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.56},
doi = {10.1093/NAR/30.1.56},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarpRSPCPPBG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HaftLRYEPW01,
author = {Daniel H. Haft and
Brendan J. Loftus and
Delwood L. Richardson and
Fan Yang and
Jonathan A. Eisen and
Ian T. Paulsen and
Owen White},
title = {TIGRFAMs: a protein family resource for the functional identification
of proteins},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {41--43},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.41},
doi = {10.1093/NAR/29.1.41},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HaftLRYEPW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarpRSPPP00,
author = {Peter D. Karp and
Monica Riley and
Milton H. Saier Jr. and
Ian T. Paulsen and
Suzanne M. Paley and
Alida Pellegrini{-}Toole},
title = {The EcoCyc and MetaCyc databases},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {56--59},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.56},
doi = {10.1093/NAR/28.1.56},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarpRSPPP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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