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ORCIDBibTeX records: Mauricio Reyes 0001
@article{DBLP:journals/cmpb/YouWR24,
author = {Suhang You and
Roland Wiest and
Mauricio Reyes},
title = {SaRF: Saliency regularized feature learning improves {MRI} sequence
classification},
journal = {Comput. Methods Programs Biomed.},
volume = {243},
pages = {107867},
year = {2024},
url = {https://doi.org/10.1016/j.cmpb.2023.107867},
doi = {10.1016/J.CMPB.2023.107867},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmpb/YouWR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/MahapatraBG0T24,
author = {Dwarikanath Mahapatra and
Behzad Bozorgtabar and
Zongyuan Ge and
Mauricio Reyes and
Jean{-}Philippe Thiran},
editor = {Michael J. Wooldridge and
Jennifer G. Dy and
Sriraam Natarajan},
title = {Combining Graph Transformers Based Multi-Label Active Learning and
Informative Data Augmentation for Chest Xray Classification},
booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI}
2024, Thirty-Sixth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver,
Canada},
pages = {21378--21386},
publisher = {{AAAI} Press},
year = {2024},
url = {https://doi.org/10.1609/aaai.v38i19.30133},
doi = {10.1609/AAAI.V38I19.30133},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/MahapatraBG0T24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-19425,
author = {Ezequiel de la Rosa and
Mauricio Reyes and
Sook{-}Lei Liew and
Alexandre Hutton and
Roland Wiest and
Johannes Kaesmacher and
Uta Hanning and
Arsany Hakim and
Richard Zubal and
Waldo Valenzuela and
David Robben and
Diana Maria Sima and
Vincenzo Anania and
Arne Brys and
James A. Meakin and
Anne Mickan and
Gabriel Broocks and
Christian Heitkamp and
Shengbo Gao and
Kongming Liang and
Ziji Zhang and
Md Mahfuzur Rahman Siddiquee and
Andriy Myronenko and
Pooya Ashtari and
Sabine Van Huffel and
Hyun{-}su Jeong and
Chiho Yoon and
Chulhong Kim and
Jiayu Huo and
S{\'{e}}bastien Ourselin and
Rachel Sparks and
Albert Cl{\`{e}}rigues and
Arnau Oliver and
Xavier Llad{\'{o}} and
Liam F. Chalcroft and
Ioannis Pappas and
Jeroen Bertels and
Ewout Heylen and
Juliette Moreau and
Nima Hatami and
Carole Frindel and
Abdul Qayyum and
Moona Mazher and
Domenec Puig and
Shao{-}Chieh Lin and
Chun{-}Jung Juan and
Tianxi Hu and
Lyndon Boone and
Maged Goubran and
Yi{-}Jui Liu and
Susanne Wegener and
Florian Kofler and
Ivan Ezhov and
Suprosanna Shit and
Moritz Roman Hernandez Petzsche and
Bjoern H. Menze and
Jan S. Kirschke and
Benedikt Wiestler},
title = {A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation:
Generalizability and Clinical Utility Beyond the {ISLES} Challenge},
journal = {CoRR},
volume = {abs/2403.19425},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.19425},
doi = {10.48550/ARXIV.2403.19425},
eprinttype = {arXiv},
eprint = {2403.19425},
timestamp = {Fri, 12 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-19425.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/RufenachtKSPESR23,
author = {Elias R{\"{u}}fenacht and
Amith Kamath and
Yannick Suter and
Robert Poel and
Ekin Ermis and
Stefan Scheib and
Mauricio Reyes},
title = {PyRaDiSe: {A} Python package for DICOM-RT-based auto-segmentation
pipeline construction and {DICOM-RT} data conversion},
journal = {Comput. Methods Programs Biomed.},
volume = {231},
pages = {107374},
year = {2023},
url = {https://doi.org/10.1016/j.cmpb.2023.107374},
doi = {10.1016/J.CMPB.2023.107374},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/RufenachtKSPESR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MahapatraPR23,
author = {Dwarikanath Mahapatra and
Alexander Poellinger and
Mauricio Reyes},
title = {Graph Node Based Interpretability Guided Sample Selection for Active
Learning},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {3},
pages = {661--673},
year = {2023},
url = {https://doi.org/10.1109/TMI.2022.3215017},
doi = {10.1109/TMI.2022.3215017},
timestamp = {Sat, 11 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/MahapatraPR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/KamathPWEA023,
author = {Amith Kamath and
Robert Poel and
Jonas Willmann and
Ekin Ermis and
Nicolaus Andratschke and
Mauricio Reyes},
title = {{ASTRA:} Atomic Surface Transformations for Radiotherapy Quality Assurance},
booktitle = {45th Annual International Conference of the {IEEE} Engineering in
Medicine {\&} Biology Society, {EMBC} 2023, Sydney, Australia,
July 24-27, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/EMBC40787.2023.10341062},
doi = {10.1109/EMBC40787.2023.10341062},
timestamp = {Thu, 11 Jan 2024 15:01:18 +0100},
biburl = {https://dblp.org/rec/conf/embc/KamathPWEA023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/KamathPWAR23,
author = {Amith Kamath and
Robert Poel and
Jonas Willmann and
Nicolaus Andratschke and
Mauricio Reyes},
title = {How Sensitive Are Deep Learning Based Radiotherapy Dose Prediction
Models To Variability In Organs At Risk Segmentation?},
booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2023, Cartagena, Colombia, April 18-21, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ISBI53787.2023.10230559},
doi = {10.1109/ISBI53787.2023.10230559},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/KamathPWAR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/YouTBR23,
author = {Suhang You and
Devavrat Tomar and
Behzad Bozorgtabar and
Mauricio Reyes},
title = {SaGTTA: Saliency Guided Test Time Augmentation for Medical Image Segmentation
Across Vendor Domain Shift},
booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2023, Cartagena, Colombia, April 18-21, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ISBI53787.2023.10230764},
doi = {10.1109/ISBI53787.2023.10230764},
timestamp = {Wed, 13 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/YouTBR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MahapatraJKRBRG23,
author = {Dwarikanath Mahapatra and
Antonio Jos{\'{e}} Jimeno{-}Yepes and
Shiba Kuanar and
Sudipta Roy and
Behzad Bozorgtabar and
Mauricio Reyes and
Zongyuan Ge},
editor = {Hayit Greenspan and
Anant Madabhushi and
Parvin Mousavi and
Septimiu Salcudean and
James Duncan and
Tanveer F. Syeda{-}Mahmood and
Russell H. Taylor},
title = {Class Specific Feature Disentanglement and Text Embeddings for Multi-label
Generalized Zero Shot {CXR} Classification},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 - 26th International Conference, Vancouver, BC, Canada, October
8-12, 2023, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {14221},
pages = {276--286},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43895-0\_26},
doi = {10.1007/978-3-031-43895-0\_26},
timestamp = {Tue, 17 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MahapatraJKRBRG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KamathWAR23,
author = {Amith Kamath and
Jonas Willmann and
Nicolaus Andratschke and
Mauricio Reyes},
editor = {Hayit Greenspan and
Anant Madabhushi and
Parvin Mousavi and
Septimiu Salcudean and
James Duncan and
Tanveer F. Syeda{-}Mahmood and
Russell H. Taylor},
title = {Do We Really Need that Skip-Connection? Understanding Its Interplay
with Task Complexity},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 - 26th International Conference, Vancouver, BC, Canada, October
8-12, 2023, Proceedings, Part {IV}},
series = {Lecture Notes in Computer Science},
volume = {14223},
pages = {302--311},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43901-8\_29},
doi = {10.1007/978-3-031-43901-8\_29},
timestamp = {Thu, 05 Oct 2023 18:00:37 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KamathWAR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RufenachtPKESFR23,
author = {Elias R{\"{u}}fenacht and
Robert Poel and
Amith Kamath and
Ekin Ermis and
Stefan Scheib and
Michael K. Fix and
Mauricio Reyes},
editor = {Hayit Greenspan and
Anant Madabhushi and
Parvin Mousavi and
Septimiu Salcudean and
James Duncan and
Tanveer F. Syeda{-}Mahmood and
Russell H. Taylor},
title = {Dose Guidance for Radiotherapy-Oriented Deep Learning Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 - 26th International Conference, Vancouver, BC, Canada, October
8-12, 2023, Proceedings, Part {IX}},
series = {Lecture Notes in Computer Science},
volume = {14228},
pages = {525--534},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43996-4\_50},
doi = {10.1007/978-3-031-43996-4\_50},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/RufenachtPKESFR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2023misail,
editor = {Jonghye Woo and
Alessa Hering and
Wilson Silva and
Xiang Li and
Huazhu Fu and
Xiaofeng Liu and
Fangxu Xing and
Sanjay Purushotham and
Tejas Sudharshan Mathai and
Pritam Mukherjee and
Max De Grauw and
Regina Beets{-}Tan and
Valentina Corbetta and
Elmar Kotter and
Mauricio Reyes and
Christian F. Baumgartner and
Quanzheng Li and
Richard M. Leahy and
Bin Dong and
Hao Chen and
Yuankai Huo and
Jinglei Lv and
Xinxing Xu and
Xiaomeng Li and
Dwarikanath Mahapatra and
Li Cheng and
Caroline Petitjean and
Beno{\^{\i}}t Presles},
title = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 Workshops - {MTSAIL} 2023, {LEAF} 2023, AI4Treat 2023, {MMMI}
2023, {REMIA} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver,
BC, Canada, October 8-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14394},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-47425-5},
doi = {10.1007/978-3-031-47425-5},
isbn = {978-3-031-47424-8},
timestamp = {Sun, 18 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/2023misail.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-01790,
author = {Annika Reinke and
Minu Tizabi and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Carole H. Sudre and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Arriel Benis and
Matthew B. Blaschko and
Florian B{\"{u}}ttner and
M. Jorge Cardoso and
Veronika Cheplygina and
Jianxu Chen and
Evangelia Christodoulou and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Luciana Ferrer and
Adrian Galdran and
Bram van Ginneken and
Ben Glocker and
Patrick Godau and
Robert Haase and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Fabian Isensee and
Pierre Jannin and
Charles E. Kahn and
Dagmar Kainmueller and
Bernhard Kainz and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Jens Kleesiek and
Florian Kofler and
Thijs Kooi and
Annette Kopp{-}Schneider and
Michal Kozubek and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Brennan Nichyporuk and
Felix Nickel and
Jens Petersen and
Susanne M. Rafelski and
Nasir M. Rajpoot and
Mauricio Reyes and
Michael A. Riegler and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clara I. S{\'{a}}nchez and
Shravya Shetty and
Maarten van Smeden and
Ronald M. Summers and
Abdel A. Taha and
Aleksei Tiulpin and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Manuel Wiesenfarth and
Ziv R. Yaniv and
Paul F. J{\"{a}}ger and
Lena Maier{-}Hein},
title = {Understanding metric-related pitfalls in image analysis validation},
journal = {CoRR},
volume = {abs/2302.01790},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.01790},
doi = {10.48550/ARXIV.2302.01790},
eprinttype = {arXiv},
eprint = {2302.01790},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-01790.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/KangHHSR22,
author = {Miao Kang and
Xiaojun Hu and
Weilin Huang and
Matthew R. Scott and
Mauricio Reyes},
title = {Dual-stream pyramid registration network},
journal = {Medical Image Anal.},
volume = {78},
pages = {102379},
year = {2022},
url = {https://doi.org/10.1016/j.media.2022.102379},
doi = {10.1016/J.MEDIA.2022.102379},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/KangHHSR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/MahapatraPR22,
author = {Dwarikanath Mahapatra and
Alexander Poellinger and
Mauricio Reyes},
title = {Interpretability-Guided Inductive Bias For Deep Learning Based Medical
Image},
journal = {Medical Image Anal.},
volume = {81},
pages = {102551},
year = {2022},
url = {https://doi.org/10.1016/j.media.2022.102551},
doi = {10.1016/J.MEDIA.2022.102551},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/MahapatraPR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MahapatraGR22,
author = {Dwarikanath Mahapatra and
Zongyuan Ge and
Mauricio Reyes},
title = {Self-Supervised Generalized Zero Shot Learning for Medical Image Classification
Using Novel Interpretable Saliency Maps},
journal = {{IEEE} Trans. Medical Imaging},
volume = {41},
number = {9},
pages = {2443--2456},
year = {2022},
url = {https://doi.org/10.1109/TMI.2022.3163232},
doi = {10.1109/TMI.2022.3163232},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/MahapatraGR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/MahapatraBR22,
author = {Dwarikanath Mahapatra and
Behzad Bozorgtabar and
Mauricio Reyes},
editor = {Leonid Karlinsky and
Tomer Michaeli and
Ko Nishino},
title = {Medical Image Super Resolution by Preserving Interpretable and Disentangled
Features},
booktitle = {Computer Vision - {ECCV} 2022 Workshops - Tel Aviv, Israel, October
23-27, 2022, Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {13807},
pages = {709--721},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-25082-8\_48},
doi = {10.1007/978-3-031-25082-8\_48},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eccv/MahapatraBR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/MahapatraR22,
author = {Dwarikanath Mahapatra and
Mauricio Reyes},
editor = {Leonid Karlinsky and
Tomer Michaeli and
Ko Nishino},
title = {Multi-label Attention Map Assisted Deep Feature Learning for Medical
Image Classification},
booktitle = {Computer Vision - {ECCV} 2022 Workshops - Tel Aviv, Israel, October
23-27, 2022, Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {13807},
pages = {722--734},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-25082-8\_49},
doi = {10.1007/978-3-031-25082-8\_49},
timestamp = {Thu, 16 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccv/MahapatraR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RizzoDKRK22,
author = {Rudy Rizzo and
Martyna Dziadosz and
Sreenath P. Kyathanahally and
Mauricio Reyes and
Roland Kreis},
editor = {Linwei Wang and
Qi Dou and
P. Thomas Fletcher and
Stefanie Speidel and
Shuo Li},
title = {Reliability of Quantification Estimates in {MR} Spectroscopy: CNNs
vs Traditional Model Fitting},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2022 - 25th International Conference, Singapore, September 18-22,
2022, Proceedings, Part {VIII}},
series = {Lecture Notes in Computer Science},
volume = {13438},
pages = {715--724},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-16452-1\_68},
doi = {10.1007/978-3-031-16452-1\_68},
timestamp = {Tue, 13 Dec 2022 14:39:06 +0100},
biburl = {https://dblp.org/rec/conf/miccai/RizzoDKRK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2022imimic,
editor = {Mauricio Reyes and
Pedro Henriques Abreu and
Jaime S. Cardoso},
title = {Interpretability of Machine Intelligence in Medical Image Computing
- 5th International Workshop, iMIMIC 2022, Held in Conjunction with
{MICCAI} 2022, Singapore, Singapore, September 22, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13611},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-17976-1},
doi = {10.1007/978-3-031-17976-1},
isbn = {978-3-031-17975-4},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2022imimic.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-01653,
author = {Lena Maier{-}Hein and
Annika Reinke and
Evangelia Christodoulou and
Ben Glocker and
Patrick Godau and
Fabian Isensee and
Jens Kleesiek and
Michal Kozubek and
Mauricio Reyes and
Michael A. Riegler and
Manuel Wiesenfarth and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Minu Dietlinde Tizabi and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Peter Bankhead and
Arriel Benis and
M. Jorge Cardoso and
Veronika Cheplygina and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Bram van Ginneken and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Pierre Jannin and
Charles E. Kahn and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Annette Kopp{-}Schneider and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
David Moher and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Felix Nickel and
Brennan Nichyporuk and
Jens Petersen and
Nasir M. Rajpoot and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clarisa S{\'{a}}nchez Guti{\'{e}}rrez and
Shravya Shetty and
Maarten van Smeden and
Carole H. Sudre and
Ronald M. Summers and
Abdel A. Taha and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Paul F. J{\"{a}}ger},
title = {Metrics reloaded: Pitfalls and recommendations for image analysis
validation},
journal = {CoRR},
volume = {abs/2206.01653},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.01653},
doi = {10.48550/ARXIV.2206.01653},
eprinttype = {arXiv},
eprint = {2206.01653},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-01653.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-06694,
author = {Moritz Roman Hernandez Petzsche and
Ezequiel de la Rosa and
Uta Hanning and
Roland Wiest and
Waldo Enrique Valenzuela Pinilla and
Mauricio Reyes and
Maria In{\^{e}}s Meyer and
Sook{-}Lei Liew and
Florian Kofler and
Ivan Ezhov and
David Robben and
Alexandre Hutton and
Tassilo Friedrich and
Teresa Zarth and
Johannes B{\"{u}}rkle and
The Anh Baran and
Bjoern H. Menze and
Gabriel Broocks and
Lukas Meyer and
Claus Zimmer and
Tobias Boeckh{-}Behrens and
Maria Berndt and
Benno Ikenberg and
Benedikt Wiestler and
Jan S. Kirschke},
title = {{ISLES} 2022: {A} multi-center magnetic resonance imaging stroke lesion
segmentation dataset},
journal = {CoRR},
volume = {abs/2206.06694},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.06694},
doi = {10.48550/ARXIV.2206.06694},
eprinttype = {arXiv},
eprint = {2206.06694},
timestamp = {Thu, 11 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-06694.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/PintoAHARS21,
author = {Adriano Pinto and
Joana Amorim and
Arsany Hakim and
Victor Alves and
Mauricio Reyes and
Carlos A. Silva},
title = {Prediction of Stroke Lesion at 90-Day Follow-Up by Fusing Raw {DSC-MRI}
With Parametric Maps Using Deep Learning},
journal = {{IEEE} Access},
volume = {9},
pages = {26260--26270},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3058297},
doi = {10.1109/ACCESS.2021.3058297},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/PintoAHARS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/MenzeIWWMRB21,
author = {Bjoern H. Menze and
Fabian Isensee and
Roland Wiest and
Benedikt Wiestler and
Klaus H. Maier{-}Hein and
Mauricio Reyes and
Spyridon Bakas},
title = {Analyzing magnetic resonance imaging data from glioma patients using
deep learning},
journal = {Comput. Medical Imaging Graph.},
volume = {88},
pages = {101828},
year = {2021},
url = {https://doi.org/10.1016/j.compmedimag.2020.101828},
doi = {10.1016/J.COMPMEDIMAG.2020.101828},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmig/MenzeIWWMRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/JungoSRB21,
author = {Alain Jungo and
Olivier Scheidegger and
Mauricio Reyes and
Fabian Balsiger},
title = {pymia: {A} Python package for data handling and evaluation in deep
learning-based medical image analysis},
journal = {Comput. Methods Programs Biomed.},
volume = {198},
pages = {105796},
year = {2021},
url = {https://doi.org/10.1016/j.cmpb.2020.105796},
doi = {10.1016/J.CMPB.2020.105796},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/JungoSRB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/PintoPMWA0021,
author = {Adriano Pinto and
S{\'{e}}rgio Pereira and
Raphael Meier and
Roland Wiest and
Victor Alves and
Mauricio Reyes and
Carlos A. Silva},
title = {Combining unsupervised and supervised learning for predicting the
final stroke lesion},
journal = {Medical Image Anal.},
volume = {69},
pages = {101888},
year = {2021},
url = {https://doi.org/10.1016/j.media.2020.101888},
doi = {10.1016/J.MEDIA.2020.101888},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/PintoPMWA0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/PoelRHSMAR21,
author = {Robert Poel and
Elias R{\"{u}}fenacht and
Evelyn Hermann and
Stefan Scheib and
Peter Manser and
Daniel M. Aebersold and
Mauricio Reyes},
title = {The predictive value of segmentation metrics on dosimetry in organs
at risk of the brain},
journal = {Medical Image Anal.},
volume = {73},
pages = {102161},
year = {2021},
url = {https://doi.org/10.1016/j.media.2021.102161},
doi = {10.1016/J.MEDIA.2021.102161},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/PoelRHSMAR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MahapatraPSR21,
author = {Dwarikanath Mahapatra and
Alexander Pollinger and
Ling Shao and
Mauricio Reyes},
title = {Interpretability-Driven Sample Selection Using Self Supervised Learning
for Disease Classification and Segmentation},
journal = {{IEEE} Trans. Medical Imaging},
volume = {40},
number = {10},
pages = {2548--2562},
year = {2021},
url = {https://doi.org/10.1109/TMI.2021.3061724},
doi = {10.1109/TMI.2021.3061724},
timestamp = {Wed, 03 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/MahapatraPSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/AblerAOGVTGRD21,
author = {Daniel Abler and
Vincent Andrearczyk and
Valentin Oreiller and
Javier Barranco Garcia and
Diem Vuong and
Stephanie Tanadini{-}Lang and
Matthias Guckenberger and
Mauricio Reyes and
Adrien Depeursinge},
editor = {Alessandro Crimi and
Spyridon Bakas},
title = {Comparison of {MR} Preprocessing Strategies and Sequences for Radiomics-Based
{MGMT} Prediction},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 7th International Workshop, BrainLes 2021, Held in Conjunction
with {MICCAI} 2021, Virtual Event, September 27, 2021, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12963},
pages = {367--380},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-031-09002-8\_33},
doi = {10.1007/978-3-031-09002-8\_33},
timestamp = {Mon, 06 Nov 2023 12:57:51 +0100},
biburl = {https://dblp.org/rec/conf/brainles-ws/AblerAOGVTGRD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2021imimic,
editor = {Mauricio Reyes and
Pedro Henriques Abreu and
Jaime S. Cardoso and
Mustafa Hajij and
Ghada Zamzmi and
Rahul Paul and
Lokendra Thakur},
title = {Interpretability of Machine Intelligence in Medical Image Computing,
and Topological Data Analysis and Its Applications for Medical Data
- 4th International Workshop, iMIMIC 2021, and 1st International Workshop,
TDA4MedicalData 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg,
France, September 27, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12929},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87444-5},
doi = {10.1007/978-3-030-87444-5},
isbn = {978-3-030-87443-8},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2021imimic.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-00489,
author = {Adriano Pinto and
S{\'{e}}rgio Pereira and
Raphael Meier and
Roland Wiest and
Victor Alves and
Mauricio Reyes and
Carlos A. Silva},
title = {Combining unsupervised and supervised learning for predicting the
final stroke lesion},
journal = {CoRR},
volume = {abs/2101.00489},
year = {2021},
url = {https://arxiv.org/abs/2101.00489},
eprinttype = {arXiv},
eprint = {2101.00489},
timestamp = {Sun, 24 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-00489.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-05642,
author = {Annika Reinke and
Matthias Eisenmann and
Minu Dietlinde Tizabi and
Carole H. Sudre and
Tim R{\"{a}}dsch and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
M. Jorge Cardoso and
Veronika Cheplygina and
Keyvan Farahani and
Ben Glocker and
Doreen Heckmann{-}N{\"{o}}tzel and
Fabian Isensee and
Pierre Jannin and
Charles E. Kahn and
Jens Kleesiek and
Tahsin M. Kur{\c{c}} and
Michal Kozubek and
Bennett A. Landman and
Geert Litjens and
Klaus H. Maier{-}Hein and
Bjoern H. Menze and
Henning M{\"{u}}ller and
Jens Petersen and
Mauricio Reyes and
Nicola Rieke and
Bram Stieltjes and
Ronald M. Summers and
Sotirios A. Tsaftaris and
Bram van Ginneken and
Annette Kopp{-}Schneider and
Paul J{\"{a}}ger and
Lena Maier{-}Hein},
title = {Common Limitations of Image Processing Metrics: {A} Picture Story},
journal = {CoRR},
volume = {abs/2104.05642},
year = {2021},
url = {https://arxiv.org/abs/2104.05642},
eprinttype = {arXiv},
eprint = {2104.05642},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-05642.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-03208,
author = {Jean Pablo Vieira de Mello and
Thiago M. Paix{\~{a}}o and
Rodrigo Ferreira Berriel and
Mauricio Reyes and
Claudine Badue and
Alberto F. De Souza and
Thiago Oliveira{-}Santos},
title = {Deep Learning-based Type Identification of Volumetric {MRI} Sequences},
journal = {CoRR},
volume = {abs/2106.03208},
year = {2021},
url = {https://arxiv.org/abs/2106.03208},
eprinttype = {arXiv},
eprint = {2106.03208},
timestamp = {Fri, 11 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-03208.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcmi/HuLHGHSWDR20,
author = {Xiaojun Hu and
Weijian Luo and
Jiliang Hu and
Sheng Guo and
Weilin Huang and
Matthew R. Scott and
Roland Wiest and
Michael Dahlweid and
Mauricio Reyes},
title = {Brain SegNet: 3D local refinement network for brain lesion segmentation},
journal = {{BMC} Medical Imaging},
volume = {20},
number = {1},
pages = {17},
year = {2020},
url = {https://doi.org/10.1186/s12880-020-0409-2},
doi = {10.1186/S12880-020-0409-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcmi/HuLHGHSWDR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/BalsigerJSCRM20,
author = {Fabian Balsiger and
Alain Jungo and
Olivier Scheidegger and
Pierre G. Carlier and
Mauricio Reyes and
Benjamin Marty},
title = {Spatially regularized parametric map reconstruction for fast magnetic
resonance fingerprinting},
journal = {Medical Image Anal.},
volume = {64},
pages = {101741},
year = {2020},
url = {https://doi.org/10.1016/j.media.2020.101741},
doi = {10.1016/J.MEDIA.2020.101741},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/BalsigerJSCRM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/SuterKWR20,
author = {Yannick Suter and
Urspeter Knecht and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Spyridon Bakas},
title = {Overall Survival Prediction for Glioblastoma on Pre-treatment {MRI}
Using Robust Radiomics and Priors},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 6th International Workshop, BrainLes 2020, Held in Conjunction
with {MICCAI} 2020, Lima, Peru, October 4, 2020, Revised Selected
Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12658},
pages = {307--317},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-72084-1\_28},
doi = {10.1007/978-3-030-72084-1\_28},
timestamp = {Mon, 06 Nov 2023 15:27:23 +0100},
biburl = {https://dblp.org/rec/conf/brainles-ws/SuterKWR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpr/MelloPBRBSO20,
author = {Jean Pablo Vieira de Mello and
Thiago M. Paix{\~{a}}o and
Rodrigo Ferreira Berriel and
Mauricio Reyes and
Claudine Badue and
Alberto F. De Souza and
Thiago Oliveira{-}Santos},
title = {Deep Learning-based Type Identification of Volumetric {MRI} Sequences},
booktitle = {25th International Conference on Pattern Recognition, {ICPR} 2020,
Virtual Event / Milan, Italy, January 10-15, 2021},
pages = {5674--5681},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ICPR48806.2021.9413120},
doi = {10.1109/ICPR48806.2021.9413120},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icpr/MelloPBRBSO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/AmorimA0S20,
author = {Jos{\'{e}} Pereira Amorim and
Pedro H. Abreu and
Mauricio Reyes and
Jo{\~{a}}o A. M. Santos},
title = {Interpretability vs. Complexity: The Friction in Deep Neural Networks},
booktitle = {2020 International Joint Conference on Neural Networks, {IJCNN} 2020,
Glasgow, United Kingdom, July 19-24, 2020},
pages = {1--7},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/IJCNN48605.2020.9206800},
doi = {10.1109/IJCNN48605.2020.9206800},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/AmorimA0S20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BalsigerJSMR20,
author = {Fabian Balsiger and
Alain Jungo and
Olivier Scheidegger and
Benjamin Marty and
Mauricio Reyes},
editor = {Farah Deeba and
Patricia Johnson and
Tobias W{\"{u}}rfl and
Jong Chul Ye},
title = {Learning Bloch Simulations for {MR} Fingerprinting by Invertible Neural
Networks},
booktitle = {Machine Learning for Medical Image Reconstruction - Third International
Workshop, {MLMIR} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
Peru, October 8, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12450},
pages = {60--69},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-61598-7\_6},
doi = {10.1007/978-3-030-61598-7\_6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BalsigerJSMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SuterKWHSR20,
author = {Yannick Suter and
Urspeter Knecht and
Roland Wiest and
Ekkehard Hewer and
Philippe Schucht and
Mauricio Reyes},
editor = {Seyed Mostafa Kia and
Hassan Mohy{-}ud{-}Din and
Ahmed Abdulkadir and
Cher Bass and
Mohamad Habes and
Jane Maryam Rondina and
Chantal M. W. Tax and
Hongzhi Wang and
Thomas Wolfers and
Saima Rathore and
Madhura Ingalhalikar},
title = {Towards {MRI} Progression Features for Glioblastoma Patients: From
Automated Volumetry and Classical Radiomics to Deep Feature Learning},
booktitle = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology
- Third International Workshop, {MLCN} 2020, and Second International
Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
Peru, October 4-8, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12449},
pages = {129--138},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-66843-3\_13},
doi = {10.1007/978-3-030-66843-3\_13},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/SuterKWHSR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SilvaPCR20,
author = {Wilson Silva and
Alexander Pollinger and
Jaime S. Cardoso and
Mauricio Reyes},
editor = {Anne L. Martel and
Purang Abolmaesumi and
Danail Stoyanov and
Diana Mateus and
Maria A. Zuluaga and
S. Kevin Zhou and
Daniel Racoceanu and
Leo Joskowicz},
title = {Interpretability-Guided Content-Based Medical Image Retrieval},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12261},
pages = {305--314},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59710-8\_30},
doi = {10.1007/978-3-030-59710-8\_30},
timestamp = {Tue, 01 Jun 2021 15:22:56 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SilvaPCR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-04139,
author = {Fabian Balsiger and
Alain Jungo and
Olivier Scheidegger and
Benjamin Marty and
Mauricio Reyes},
title = {Learning Bloch Simulations for {MR} Fingerprinting by Invertible Neural
Networks},
journal = {CoRR},
volume = {abs/2008.04139},
year = {2020},
url = {https://arxiv.org/abs/2008.04139},
eprinttype = {arXiv},
eprint = {2008.04139},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-04139.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-03639,
author = {Alain Jungo and
Olivier Scheidegger and
Mauricio Reyes and
Fabian Balsiger},
title = {pymia: {A} Python package for data handling and evaluation in deep
learning-based medical image analysis},
journal = {CoRR},
volume = {abs/2010.03639},
year = {2020},
url = {https://arxiv.org/abs/2010.03639},
eprinttype = {arXiv},
eprint = {2010.03639},
timestamp = {Tue, 13 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-03639.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cviu/BozorgtabarMTPE19,
author = {Behzad Bozorgtabar and
Dwarikanath Mahapatra and
Hendrik von Teng and
Alexander Pollinger and
Lukas Ebner and
Jean{-}Philippe Thiran and
Mauricio Reyes},
title = {Informative sample generation using class aware generative adversarial
networks for classification of chest Xrays},
journal = {Comput. Vis. Image Underst.},
volume = {184},
pages = {57--65},
year = {2019},
url = {https://doi.org/10.1016/j.cviu.2019.04.007},
doi = {10.1016/J.CVIU.2019.04.007},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cviu/BozorgtabarMTPE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ChandranMGZR19,
author = {Vimal Chandran and
Ghislain Maquer and
Thomas Gerig and
Philippe Zysset and
Mauricio Reyes},
title = {Supervised learning for bone shape and cortical thickness estimation
from {CT} images for finite element analysis},
journal = {Medical Image Anal.},
volume = {52},
pages = {42--55},
year = {2019},
url = {https://doi.org/10.1016/j.media.2018.11.001},
doi = {10.1016/J.MEDIA.2018.11.001},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/ChandranMGZR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RebsamenRM0WM19,
author = {Michael Rebsamen and
Christian Rummel and
Ines M{\"{u}}rner{-}Lavanchy and
Mauricio Reyes and
Roland Wiest and
Richard McKinley},
editor = {Kilian M. Pohl and
Wesley K. Thompson and
Ehsan Adeli and
Marius George Linguraru},
title = {Surface-Based Brain Morphometry for the Prediction of Fluid Intelligence
in the Neurocognitive Prediction Challenge 2019},
booktitle = {Adolescent Brain Cognitive Development Neurocognitive Prediction -
First Challenge, {ABCD-NP} 2019, Held in Conjunction with {MICCAI}
2019, Shenzhen, China, October 13, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11791},
pages = {26--34},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31901-4\_4},
doi = {10.1007/978-3-030-31901-4\_4},
timestamp = {Wed, 16 Mar 2022 23:56:10 +0100},
biburl = {https://dblp.org/rec/conf/miccai/RebsamenRM0WM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Jungo019,
author = {Alain Jungo and
Mauricio Reyes},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Assessing Reliability and Challenges of Uncertainty Estimations for
Medical Image Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11765},
pages = {48--56},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32245-8\_6},
doi = {10.1007/978-3-030-32245-8\_6},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/Jungo019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BalsigerSS019,
author = {Fabian Balsiger and
Yannick Soom and
Olivier Scheidegger and
Mauricio Reyes},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Learning Shape Representation on Sparse Point Clouds for Volumetric
Image Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11765},
pages = {273--281},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32245-8\_31},
doi = {10.1007/978-3-030-32245-8\_31},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BalsigerSS019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HuKHSW019,
author = {Xiaojun Hu and
Miao Kang and
Weilin Huang and
Matthew R. Scott and
Roland Wiest and
Mauricio Reyes},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Dual-Stream Pyramid Registration Network},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11765},
pages = {382--390},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32245-8\_43},
doi = {10.1007/978-3-030-32245-8\_43},
timestamp = {Thu, 10 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/HuKHSW019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/BalsigerSCM019,
author = {Fabian Balsiger and
Olivier Scheidegger and
Pierre G. Carlier and
Benjamin Marty and
Mauricio Reyes},
editor = {M. Jorge Cardoso and
Aasa Feragen and
Ben Glocker and
Ender Konukoglu and
Ipek Oguz and
Gozde B. Unal and
Tom Vercauteren},
title = {On the Spatial and Temporal Influence for the Reconstruction of Magnetic
Resonance Fingerprinting},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2019, 8-10 July 2019, London, United Kingdom},
series = {Proceedings of Machine Learning Research},
volume = {102},
pages = {27--38},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v102/balsiger19a.html},
timestamp = {Mon, 08 Jul 2019 16:13:41 +0200},
biburl = {https://dblp.org/rec/conf/midl/BalsigerSCM019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018brainles-1,
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Farahani Keyvan and
Mauricio Reyes and
Theo van Walsum},
title = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction
with {MICCAI} 2018, Granada, Spain, September 16, 2018, Revised Selected
Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {11383},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-11723-8},
doi = {10.1007/978-3-030-11723-8},
isbn = {978-3-030-11722-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2018brainles-1.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018brainles-2,
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Farahani Keyvan and
Mauricio Reyes and
Theo van Walsum},
title = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction
with {MICCAI} 2018, Granada, Spain, September 16, 2018, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11384},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-11726-9},
doi = {10.1007/978-3-030-11726-9},
isbn = {978-3-030-11725-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2018brainles-2.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2019imimic,
editor = {Kenji Suzuki and
Mauricio Reyes and
Tanveer F. Syeda{-}Mahmood and
Ben Glocker and
Roland Wiest and
Yaniv Gur and
Hayit Greenspan and
Anant Madabhushi},
title = {Interpretability of Machine Intelligence in Medical Image Computing
and Multimodal Learning for Clinical Decision Support - Second International
Workshop, iMIMIC 2019, and 9th International Workshop, {ML-CDS} 2019,
Held in Conjunction with {MICCAI} 2019, Shenzhen, China, October 17,
2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11797},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-33850-3},
doi = {10.1007/978-3-030-33850-3},
isbn = {978-3-030-33849-7},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2019imimic.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-07419,
author = {Richard McKinley and
Rik Wepfer and
Fabian Aschwanden and
Lorenz Grunder and
Raphaela Muri and
Christian Rummel and
Rajeev Verma and
Christian Weisstanner and
Mauricio Reyes and
Anke Salmen and
Andrew Chan and
Franca Wagner and
Roland Wiest},
title = {Simultaneous lesion and neuroanatomy segmentation in Multiple Sclerosis
using deep neural networks},
journal = {CoRR},
volume = {abs/1901.07419},
year = {2019},
url = {http://arxiv.org/abs/1901.07419},
eprinttype = {arXiv},
eprint = {1901.07419},
timestamp = {Sat, 02 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-07419.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-02436,
author = {Richard McKinley and
Michael Rebsamen and
Raphael Meier and
Mauricio Reyes and
Christian Rummel and
Roland Wiest},
title = {Few-shot brain segmentation from weakly labeled data with deep heteroscedastic
multi-task networks},
journal = {CoRR},
volume = {abs/1904.02436},
year = {2019},
url = {http://arxiv.org/abs/1904.02436},
eprinttype = {arXiv},
eprint = {1904.02436},
timestamp = {Wed, 24 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-02436.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-03041,
author = {Richard McKinley and
Lorenz Grunder and
Rik Wepfer and
Fabian Aschwanden and
Tim Fischer and
Christoph Friedli and
Raphaela Muri and
Christian Rummel and
Rajeev Verma and
Christian Weisstanner and
Mauricio Reyes and
Anke Salmen and
Andrew Chan and
Roland Wiest and
Franca Wagner},
title = {Automatic detection of lesion load change in Multiple Sclerosis using
convolutional neural networks with segmentation confidence},
journal = {CoRR},
volume = {abs/1904.03041},
year = {2019},
url = {http://arxiv.org/abs/1904.03041},
eprinttype = {arXiv},
eprint = {1904.03041},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-03041.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-10781,
author = {Behzad Bozorgtabar and
Dwarikanath Mahapatra and
Hendrik von Teng and
Alexander Pollinger and
Lukas Ebner and
Jean{-}Philippe Thiran and
Mauricio Reyes},
title = {Informative sample generation using class aware generative adversarial
networks for classification of chest Xrays},
journal = {CoRR},
volume = {abs/1904.10781},
year = {2019},
url = {http://arxiv.org/abs/1904.10781},
eprinttype = {arXiv},
eprint = {1904.10781},
timestamp = {Wed, 21 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-10781.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-02281,
author = {Fabian Balsiger and
Yannick Soom and
Olivier Scheidegger and
Mauricio Reyes},
title = {Learning Shape Representation on Sparse Point Clouds for Volumetric
Image Segmentation},
journal = {CoRR},
volume = {abs/1906.02281},
year = {2019},
url = {http://arxiv.org/abs/1906.02281},
eprinttype = {arXiv},
eprint = {1906.02281},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-02281.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-03338,
author = {Alain Jungo and
Mauricio Reyes},
title = {Assessing Reliability and Challenges of Uncertainty Estimations for
Medical Image Segmentation},
journal = {CoRR},
volume = {abs/1907.03338},
year = {2019},
url = {http://arxiv.org/abs/1907.03338},
eprinttype = {arXiv},
eprint = {1907.03338},
timestamp = {Wed, 17 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-03338.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-11966,
author = {Xiaojun Hu and
Miao Kang and
Weilin Huang and
Matthew R. Scott and
Roland Wiest and
Mauricio Reyes},
title = {Dual-Stream Pyramid Registration Network},
journal = {CoRR},
volume = {abs/1909.11966},
year = {2019},
url = {http://arxiv.org/abs/1909.11966},
eprinttype = {arXiv},
eprint = {1909.11966},
timestamp = {Fri, 27 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-11966.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-03786,
author = {Fabian Balsiger and
Alain Jungo and
Olivier Scheidegger and
Pierre G. Carlier and
Mauricio Reyes and
Benjamin Marty},
title = {Spatially Regularized Parametric Map Reconstruction for Fast Magnetic
Resonance Fingerprinting},
journal = {CoRR},
volume = {abs/1911.03786},
year = {2019},
url = {http://arxiv.org/abs/1911.03786},
eprinttype = {arXiv},
eprint = {1911.03786},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-03786.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/KjerFWGVBLCPSSR18,
author = {Hans Martin Kjer and
Jens Fagertun and
Wilhelm Wimmer and
Nicolas Gerber and
Sergio Vera and
Livia Barazzetti and
Nerea Mangado Lopez and
Mario Ceresa and
Gemma Piella and
Thomas Stark and
Martin Stauber and
Mauricio Reyes and
Stefan Weber and
Marco Caversaccio and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Rasmus R. Paulsen},
title = {Patient-specific estimation of detailed cochlear shape from clinical
{CT} images},
journal = {Int. J. Comput. Assist. Radiol. Surg.},
volume = {13},
number = {3},
pages = {389--396},
year = {2018},
url = {https://doi.org/10.1007/s11548-017-1701-7},
doi = {10.1007/S11548-017-1701-7},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cars/KjerFWGVBLCPSSR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/PereiraMMWASR18,
author = {S{\'{e}}rgio Pereira and
Raphael Meier and
Richard McKinley and
Roland Wiest and
Victor Alves and
Carlos A. Silva and
Mauricio Reyes},
title = {Enhancing interpretability of automatically extracted machine learning
features: application to a RBM-Random Forest system on brain lesion
segmentation},
journal = {Medical Image Anal.},
volume = {44},
pages = {228--244},
year = {2018},
url = {https://doi.org/10.1016/j.media.2017.12.009},
doi = {10.1016/J.MEDIA.2017.12.009},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/PereiraMMWASR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/LuBCGWGR18,
author = {Ping Lu and
Livia Barazzetti and
Vimal Chandran and
Kate A. Gavaghan and
Stefan Weber and
Nicolas Gerber and
Mauricio Reyes},
title = {Highly Accurate Facial Nerve Segmentation Refinement From {CBCT/CT}
Imaging Using a Super-Resolution Classification Approach},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {65},
number = {1},
pages = {178--188},
year = {2018},
url = {https://doi.org/10.1109/TBME.2017.2697916},
doi = {10.1109/TBME.2017.2697916},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbe/LuBCGWGR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SuterRW018,
author = {Yannick Suter and
Christian Rummel and
Roland Wiest and
Mauricio Reyes},
title = {Fast and uncertainty-aware cerebral cortex morphometry estimation
using random forest regression},
booktitle = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2018, Washington, DC, USA, April 4-7, 2018},
pages = {1052--1055},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ISBI.2018.8363752},
doi = {10.1109/ISBI.2018.8363752},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SuterRW018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BalsigerKCCSG018,
author = {Fabian Balsiger and
Amaresha Shridhar Konar and
Shivaprasad Chikop and
Vimal Chandran and
Olivier Scheidegger and
Sairam Geethanath and
Mauricio Reyes},
editor = {Florian Knoll and
Andreas K. Maier and
Daniel Rueckert},
title = {Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal
Convolutional Neural Networks},
booktitle = {Machine Learning for Medical Image Reconstruction - First International
Workshop, {MLMIR} 2018, Held in Conjunction with {MICCAI} 2018, Granada,
Spain, September 16, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11074},
pages = {39--46},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00129-2\_5},
doi = {10.1007/978-3-030-00129-2\_5},
timestamp = {Fri, 27 Mar 2020 08:59:34 +0100},
biburl = {https://dblp.org/rec/conf/miccai/BalsigerKCCSG018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/PereiraMA0S18,
author = {S{\'{e}}rgio Pereira and
Raphael Meier and
Victor Alves and
Mauricio Reyes and
Carlos A. Silva},
editor = {Danail Stoyanov and
Zeike Taylor and
Seyed Mostafa Kia and
Ipek Oguz and
Mauricio Reyes and
Anne L. Martel and
Lena Maier{-}Hein and
Andre F. Marquand and
Edouard Duchesnay and
Tommy L{\"{o}}fstedt and
Bennett A. Landman and
M. Jorge Cardoso and
Carlos A. Silva and
S{\'{e}}rgio Pereira and
Raphael Meier},
title = {Automatic Brain Tumor Grading from {MRI} Data Using Convolutional
Neural Networks and Quality Assessment},
booktitle = {Understanding and Interpreting Machine Learning in Medical Image Computing
Applications - First International Workshops {MLCN} 2018, {DLF} 2018,
and iMIMIC 2018, Held in Conjunction with {MICCAI} 2018, Granada,
Spain, September 16-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11038},
pages = {106--114},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-02628-8\_12},
doi = {10.1007/978-3-030-02628-8\_12},
timestamp = {Fri, 05 Jun 2020 14:00:19 +0200},
biburl = {https://dblp.org/rec/conf/miccai/PereiraMA0S18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/PintoPMAWS018,
author = {Adriano Pinto and
S{\'{e}}rgio Pereira and
Raphael Meier and
Victor Alves and
Roland Wiest and
Carlos A. Silva and
Mauricio Reyes},
editor = {Alejandro F. Frangi and
Julia A. Schnabel and
Christos Davatzikos and
Carlos Alberola{-}L{\'{o}}pez and
Gabor Fichtinger},
title = {Enhancing Clinical {MRI} Perfusion Maps with Data-Driven Maps of Complementary
Nature for Lesion Outcome Prediction},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2018 - 21st International Conference, Granada, Spain, September 16-20,
2018, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {11072},
pages = {107--115},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00931-1\_13},
doi = {10.1007/978-3-030-00931-1\_13},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/PintoPMAWS018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SuterJRKHW018,
author = {Yannick Suter and
Alain Jungo and
Michael Rebsamen and
Urspeter Knecht and
Evelyn Herrmann and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Farahani Keyvan and
Mauricio Reyes and
Theo van Walsum},
title = {Deep Learning Versus Classical Regression for Brain Tumor Patient
Survival Prediction},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction
with {MICCAI} 2018, Granada, Spain, September 16, 2018, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11384},
pages = {429--440},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-11726-9\_38},
doi = {10.1007/978-3-030-11726-9\_38},
timestamp = {Fri, 27 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/SuterJRKHW018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MahapatraBT018,
author = {Dwarikanath Mahapatra and
Behzad Bozorgtabar and
Jean{-}Philippe Thiran and
Mauricio Reyes},
editor = {Alejandro F. Frangi and
Julia A. Schnabel and
Christos Davatzikos and
Carlos Alberola{-}L{\'{o}}pez and
Gabor Fichtinger},
title = {Efficient Active Learning for Image Classification and Segmentation
Using a Sample Selection and Conditional Generative Adversarial Network},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2018 - 21st International Conference, Granada, Spain, September 16-20,
2018, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11071},
pages = {580--588},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00934-2\_65},
doi = {10.1007/978-3-030-00934-2\_65},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MahapatraBT018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JungoMEBHW018,
author = {Alain Jungo and
Raphael Meier and
Ekin Ermis and
Marcela Blatti{-}Moreno and
Evelyn Herrmann and
Roland Wiest and
Mauricio Reyes},
editor = {Alejandro F. Frangi and
Julia A. Schnabel and
Christos Davatzikos and
Carlos Alberola{-}L{\'{o}}pez and
Gabor Fichtinger},
title = {On the Effect of Inter-observer Variability for a Reliable Estimation
of Uncertainty of Medical Image Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2018 - 21st International Conference, Granada, Spain, September 16-20,
2018, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {11070},
pages = {682--690},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00928-1\_77},
doi = {10.1007/978-3-030-00928-1\_77},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/JungoMEBHW018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2017brainles,
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Bjoern H. Menze and
Mauricio Reyes},
title = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction
with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10670},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-75238-9},
doi = {10.1007/978-3-319-75238-9},
isbn = {978-3-319-75237-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2017brainles.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018mlcn,
editor = {Danail Stoyanov and
Zeike Taylor and
Seyed Mostafa Kia and
Ipek Oguz and
Mauricio Reyes and
Anne L. Martel and
Lena Maier{-}Hein and
Andre F. Marquand and
Edouard Duchesnay and
Tommy L{\"{o}}fstedt and
Bennett A. Landman and
M. Jorge Cardoso and
Carlos A. Silva and
S{\'{e}}rgio Pereira and
Raphael Meier},
title = {Understanding and Interpreting Machine Learning in Medical Image Computing
Applications - First International Workshops {MLCN} 2018, {DLF} 2018,
and iMIMIC 2018, Held in Conjunction with {MICCAI} 2018, Granada,
Spain, September 16-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11038},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-02628-8},
doi = {10.1007/978-3-030-02628-8},
isbn = {978-3-030-02627-1},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2018mlcn.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-02562,
author = {Alain Jungo and
Raphael Meier and
Ekin Ermis and
Marcela Blatti{-}Moreno and
Evelyn Herrmann and
Roland Wiest and
Mauricio Reyes},
title = {On the Effect of Inter-observer Variability for a Reliable Estimation
of Uncertainty of Medical Image Segmentation},
journal = {CoRR},
volume = {abs/1806.02562},
year = {2018},
url = {http://arxiv.org/abs/1806.02562},
eprinttype = {arXiv},
eprint = {1806.02562},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-02562.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-03106,
author = {Alain Jungo and
Raphael Meier and
Ekin Ermis and
Evelyn Herrmann and
Mauricio Reyes},
title = {Uncertainty-driven Sanity Check: Application to Postoperative Brain
Tumor Cavity Segmentation},
journal = {CoRR},
volume = {abs/1806.03106},
year = {2018},
url = {http://arxiv.org/abs/1806.03106},
eprinttype = {arXiv},
eprint = {1806.03106},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-03106.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-04413,
author = {Adriano Pinto and
S{\'{e}}rgio Pereira and
Raphael Meier and
Victor Alves and
Roland Wiest and
Carlos A. Silva and
Mauricio Reyes},
title = {Enhancing clinical {MRI} Perfusion maps with data-driven maps of complementary
nature for lesion outcome prediction},
journal = {CoRR},
volume = {abs/1806.04413},
year = {2018},
url = {http://arxiv.org/abs/1806.04413},
eprinttype = {arXiv},
eprint = {1806.04413},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-04413.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-05473,
author = {Dwarikanath Mahapatra and
Behzad Bozorgtabar and
Jean{-}Philippe Thiran and
Mauricio Reyes},
title = {Efficient Active Learning for Image Classification and Segmentation
using a Sample Selection and Conditional Generative Adversarial Network},
journal = {CoRR},
volume = {abs/1806.05473},
year = {2018},
url = {http://arxiv.org/abs/1806.05473},
eprinttype = {arXiv},
eprint = {1806.05473},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-05473.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-06356,
author = {Fabian Balsiger and
Amaresha Shridhar Konar and
Shivaprasad Chikop and
Vimal Chandran and
Olivier Scheidegger and
Sairam Geethanath and
Mauricio Reyes},
title = {Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal
Convolutional Neural Networks},
journal = {CoRR},
volume = {abs/1807.06356},
year = {2018},
url = {http://arxiv.org/abs/1807.06356},
eprinttype = {arXiv},
eprint = {1807.06356},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1807-06356.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-09468,
author = {S{\'{e}}rgio Pereira and
Raphael Meier and
Victor Alves and
Mauricio Reyes and
Carlos A. Silva},
title = {Automatic brain tumor grading from {MRI} data using convolutional
neural networks and quality assessment},
journal = {CoRR},
volume = {abs/1809.09468},
year = {2018},
url = {http://arxiv.org/abs/1809.09468},
eprinttype = {arXiv},
eprint = {1809.09468},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-09468.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-02629,
author = {Spyridon Bakas and
Mauricio Reyes and
Andr{\'{a}}s Jakab and
Stefan Bauer and
Markus Rempfler and
Alessandro Crimi and
Russell Takeshi Shinohara and
Christoph Berger and
Sung Min Ha and
Martin Rozycki and
Marcel Prastawa and
Esther Alberts and
Jana Lipkov{\'{a}} and
John B. Freymann and
Justin S. Kirby and
Michel Bilello and
Hassan M. Fathallah{-}Shaykh and
Roland Wiest and
Jan Kirschke and
Benedikt Wiestler and
Rivka R. Colen and
Aikaterini Kotrotsou and
Pamela LaMontagne and
Daniel S. Marcus and
Mikhail Milchenko and
Arash Nazeri and
Marc{-}Andr{\'{e}} Weber and
Abhishek Mahajan and
Ujjwal Baid and
Dongjin Kwon and
Manu Agarwal and
Mahbubul Alam and
Alberto Albiol and
Antonio Albiol and
Alex Varghese and
Tran Anh Tuan and
Tal Arbel and
Aaron Avery and
Pranjal B. and
Subhashis Banerjee and
Thomas Batchelder and
Kayhan N. Batmanghelich and
Enzo Battistella and
Martin Bendszus and
Eze Benson and
Jos{\'{e}} Bernal and
George Biros and
Mariano Cabezas and
Siddhartha Chandra and
Yi{-}Ju Chang and
et al.},
title = {Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation,
Progression Assessment, and Overall Survival Prediction in the {BRATS}
Challenge},
journal = {CoRR},
volume = {abs/1811.02629},
year = {2018},
url = {http://arxiv.org/abs/1811.02629},
eprinttype = {arXiv},
eprint = {1811.02629},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-02629.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-04907,
author = {Yannick Suter and
Alain Jungo and
Michael Rebsamen and
Urspeter Knecht and
Evelyn Herrmann and
Roland Wiest and
Mauricio Reyes},
title = {Deep Learning versus Classical Regression for Brain Tumor Patient
Survival Prediction},
journal = {CoRR},
volume = {abs/1811.04907},
year = {2018},
url = {http://arxiv.org/abs/1811.04907},
eprinttype = {arXiv},
eprint = {1811.04907},
timestamp = {Fri, 23 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-04907.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/McKinleyJWR17,
author = {Richard McKinley and
Alain Jungo and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Bjoern H. Menze and
Mauricio Reyes},
title = {Pooling-Free Fully Convolutional Networks with Dense Skip Connections
for Semantic Segmentation, with Application to Brain Tumor Segmentation},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction
with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10670},
pages = {169--177},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-75238-9\_15},
doi = {10.1007/978-3-319-75238-9\_15},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/McKinleyJWR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JungoMMKVPMPWR17,
author = {Alain Jungo and
Richard McKinley and
Raphael Meier and
Urspeter Knecht and
Luis Vera and
Juli{\'{a}}n P{\'{e}}rez{-}Beteta and
David Molina{-}Garc{\'{\i}}a and
V{\'{\i}}ctor M. P{\'{e}}rez{-}Garc{\'{\i}}a and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Spyridon Bakas and
Hugo J. Kuijf and
Bjoern H. Menze and
Mauricio Reyes},
title = {Towards Uncertainty-Assisted Brain Tumor Segmentation and Survival
Prediction},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction
with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10670},
pages = {474--485},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-75238-9\_40},
doi = {10.1007/978-3-319-75238-9\_40},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/JungoMMKVPMPWR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2017cmmi,
editor = {M. Jorge Cardoso and
Tal Arbel and
Fei Gao and
Bernhard Kainz and
Theo van Walsum and
Kuangyu Shi and
Kanwal K. Bhatia and
Roman Peter and
Tom Vercauteren and
Mauricio Reyes and
Adrian V. Dalca and
Roland Wiest and
Wiro J. Niessen and
Bart J. Emmer},
title = {Molecular Imaging, Reconstruction and Analysis of Moving Body Organs,
and Stroke Imaging and Treatment - Fifth International Workshop, {CMMI}
2017, Second International Workshop, {RAMBO} 2017, and First International
Workshop, {SWITCH} 2017, Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec
City, QC, Canada, September 14, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10555},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67564-0},
doi = {10.1007/978-3-319-67564-0},
isbn = {978-3-319-67563-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2017cmmi.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MeierKJWR17,
author = {Raphael Meier and
Urspeter Knecht and
Alain Jungo and
Roland Wiest and
Mauricio Reyes},
title = {Perturb-and-MPM: Quantifying Segmentation Uncertainty in Dense Multi-Label
CRFs},
journal = {CoRR},
volume = {abs/1703.00312},
year = {2017},
url = {http://arxiv.org/abs/1703.00312},
eprinttype = {arXiv},
eprint = {1703.00312},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MeierKJWR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/curac/LuBCGWGR16,
author = {Ping Lu and
Livia Barazzetti and
Vimal Chandran and
Kate A. Gavaghan and
Stefan Weber and
Nicolas Gerber and
Mauricio Reyes},
editor = {Juan Ans{\'{o}} and
Kate Gerber and
Nicolas Gerber and
Marius Schwalbe and
Raphael Sznitman and
Stefan Weber and
Tom M. Williamson and
Wilhelm Wimmer and
Arya Nabavi},
title = {Super-Resolution Classification Improves Facial Nerve Segmentation
from {CBCT} Imaging},
booktitle = {15. Jahrestagung der Deutschen Gesellschaft f{\"{u}}r Computer-
und Roboterassistierte Chirurgie, September 29 - October 1, 2016,
Bern, Switzerland},
pages = {143--144},
publisher = {Der Andere Verlag},
year = {2016},
timestamp = {Wed, 23 May 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/curac/LuBCGWGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miar/ShahimRSJB16,
author = {Kamal Shahim and
Mauricio Reyes and
Ruben Simon and
Philipp J{\"{u}}rgens and
Christoph Blecher},
editor = {Guoyan Zheng and
Hongen Liao and
Pierre Jannin and
Philippe C. Cattin and
Su{-}Lin Lee},
title = {Advanced Design System for Infantile Cranium Shape Model Growth Prediction},
booktitle = {Medical Imaging and Augmented Reality - 7th International Conference,
{MIAR} 2016, Bern, Switzerland, August 24-26, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9805},
pages = {104--113},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43775-0\_10},
doi = {10.1007/978-3-319-43775-0\_10},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/miar/ShahimRSJB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeierKWR16,
author = {Raphael Meier and
Urspeter Knecht and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Stefan Winzeck and
Heinz Handels},
title = {CRF-Based Brain Tumor Segmentation: Alleviating the Shrinking Bias},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Second International Workshop, BrainLes 2016, with the
Challenges on BRATS, {ISLES} and mTOP 2016, Held in Conjunction with
{MICCAI} 2016, Athens, Greece, October 17, 2016, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {10154},
pages = {100--107},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-55524-9\_10},
doi = {10.1007/978-3-319-55524-9\_10},
timestamp = {Sun, 02 Oct 2022 16:11:47 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeierKWR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/McKinleyWGWCWR16,
author = {Richard McKinley and
Rik Wepfer and
Tom Gundersen and
Franca Wagner and
Andrew Chan and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Stefan Winzeck and
Heinz Handels},
title = {Nabla-net: {A} Deep Dag-Like Convolutional Architecture for Biomedical
Image Segmentation},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Second International Workshop, BrainLes 2016, with the
Challenges on BRATS, {ISLES} and mTOP 2016, Held in Conjunction with
{MICCAI} 2016, Athens, Greece, October 17, 2016, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {10154},
pages = {119--128},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-55524-9\_12},
doi = {10.1007/978-3-319-55524-9\_12},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/McKinleyWGWCWR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShokicheBHDR16,
author = {Carlos Correa Shokiche and
Philipp Baumann and
Ruslan Hlushchuk and
Valentin Djonov and
Mauricio Reyes},
editor = {S{\'{e}}bastien Ourselin and
Leo Joskowicz and
Mert R. Sabuncu and
G{\"{o}}zde B. {\"{U}}nal and
William M. Wells III},
title = {High-Throughput Glomeruli Analysis of {\(\mu\)} {CT} Kidney Images
Using Tree Priors and Scalable Sparse Computation},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2016 - 19th International Conference, Athens, Greece, October 17-21,
2016, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9901},
pages = {370--378},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46723-8\_43},
doi = {10.1007/978-3-319-46723-8\_43},
timestamp = {Fri, 08 Apr 2022 11:01:35 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ShokicheBHDR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2015brainles,
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Heinz Handels},
title = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - First International Workshop, Brainles 2015, Held in Conjunction
with {MICCAI} 2015, Munich, Germany, October 5, 2015, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {9556},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-30858-6},
doi = {10.1007/978-3-319-30858-6},
isbn = {978-3-319-30857-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2015brainles.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2016brainles,
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Stefan Winzeck and
Heinz Handels},
title = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - Second International Workshop, BrainLes 2016, with the
Challenges on BRATS, {ISLES} and mTOP 2016, Held in Conjunction with
{MICCAI} 2016, Athens, Greece, October 17, 2016, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {10154},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-55524-9},
doi = {10.1007/978-3-319-55524-9},
isbn = {978-3-319-55523-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2016brainles.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/CerrolazaRSBL15,
author = {Juan J. Cerrolaza and
Mauricio Reyes and
Ronald M. Summers and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Marius George Linguraru},
title = {Automatic multi-resolution shape modeling of multi-organ structures},
journal = {Medical Image Anal.},
volume = {25},
number = {1},
pages = {11--21},
year = {2015},
url = {https://doi.org/10.1016/j.media.2015.04.003},
doi = {10.1016/J.MEDIA.2015.04.003},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/CerrolazaRSBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MenzeJBKFKBPSWL15,
author = {Bjoern H. Menze and
Andr{\'{a}}s Jakab and
Stefan Bauer and
Jayashree Kalpathy{-}Cramer and
Keyvan Farahani and
Justin S. Kirby and
Yuliya Burren and
Nicole Porz and
Johannes Slotboom and
Roland Wiest and
Levente Lanczi and
Elizabeth R. Gerstner and
Marc{-}Andr{\'{e}} Weber and
Tal Arbel and
Brian B. Avants and
Nicholas Ayache and
Patricia Buendia and
D. Louis Collins and
Nicolas Cordier and
Jason J. Corso and
Antonio Criminisi and
Tilak Das and
Herve Delingette and
{\c{C}}agatay Demiralp and
Christopher R. Durst and
Michel Dojat and
Senan Doyle and
Joana Festa and
Florence Forbes and
Ezequiel Geremia and
Ben Glocker and
Polina Golland and
Xiaotao Guo and
Andac Hamamci and
Khan M. Iftekharuddin and
Raj Jena and
Nigel M. John and
Ender Konukoglu and
Danial Lashkari and
Jos{\'{e}} Antonio Mariz and
Raphael Meier and
S{\'{e}}rgio Pereira and
Doina Precup and
Stephen J. Price and
Tammy Riklin Raviv and
Syed M. S. Reza and
Michael T. Ryan and
Duygu Sarikaya and
Lawrence H. Schwartz and
Hoo{-}Chang Shin and
Jamie Shotton and
Carlos A. Silva and
Nuno J. Sousa and
Nagesh K. Subbanna and
G{\'{a}}bor Sz{\'{e}}kely and
Thomas J. Taylor and
Owen M. Thomas and
Nicholas J. Tustison and
G{\"{o}}zde B. {\"{U}}nal and
Flor Vasseur and
Max Wintermark and
Dong Hye Ye and
Liang Zhao and
Binsheng Zhao and
Darko Zikic and
Marcel Prastawa and
Mauricio Reyes and
Koen Van Leemput},
title = {The Multimodal Brain Tumor Image Segmentation Benchmark {(BRATS)}},
journal = {{IEEE} Trans. Medical Imaging},
volume = {34},
number = {10},
pages = {1993--2024},
year = {2015},
url = {https://doi.org/10.1109/TMI.2014.2377694},
doi = {10.1109/TMI.2014.2377694},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/MenzeJBKFKBPSWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/LuBCGWGR15,
author = {Ping Lu and
Livia Barazzetti and
Vimal Chandran and
Kate A. Gavaghan and
Stefan Weber and
Nicolas Gerber and
Mauricio Reyes},
title = {Facial nerve image enhancement from {CBCT} using supervised learning
technique},
booktitle = {37th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2015, Milan, Italy, August 25-29,
2015},
pages = {2964--2967},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/EMBC.2015.7319014},
doi = {10.1109/EMBC.2015.7319014},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/LuBCGWGR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/ValenzuelaFIDVB15,
author = {Waldo Valenzuela and
Stephen J. Ferguson and
Dominika Ignasiak and
Gaelle Diserens and
Peter Vermathen and
Chris Boesch and
Mauricio Reyes},
title = {Correction tool for Active Shape Model based lumbar muscle segmentation},
booktitle = {37th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2015, Milan, Italy, August 25-29,
2015},
pages = {3033--3036},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/EMBC.2015.7319031},
doi = {10.1109/EMBC.2015.7319031},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/ValenzuelaFIDVB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeierKHWR15,
author = {Raphael Meier and
Venetia Karamitsou and
Simon Habegger and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Heinz Handels},
title = {Parameter Learning for CRF-Based Tissue Segmentation of Brain Tumors},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - First International Workshop, Brainles 2015, Held in Conjunction
with {MICCAI} 2015, Munich, Germany, October 5, 2015, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {9556},
pages = {156--167},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-30858-6\_14},
doi = {10.1007/978-3-319-30858-6\_14},
timestamp = {Sun, 02 Oct 2022 16:11:47 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeierKHWR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/McKinleyHWR15,
author = {Richard McKinley and
Levin H{\"{a}}ni and
Roland Wiest and
Mauricio Reyes},
editor = {Alessandro Crimi and
Bjoern H. Menze and
Oskar Maier and
Mauricio Reyes and
Heinz Handels},
title = {Segmenting the Ischemic Penumbra: {A} Decision Forest Approach with
Automatic Threshold Finding},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - First International Workshop, Brainles 2015, Held in Conjunction
with {MICCAI} 2015, Munich, Germany, October 5, 2015, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {9556},
pages = {275--283},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-30858-6\_24},
doi = {10.1007/978-3-319-30858-6\_24},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/McKinleyHWR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ChandranZR15,
author = {Vimal Chandran and
Philippe Zysset and
Mauricio Reyes},
editor = {Nassir Navab and
Joachim Hornegger and
William M. Wells III and
Alejandro F. Frangi},
title = {Prediction of Trabecular Bone Anisotropy from Quantitative Computed
Tomography Using Supervised Learning and a Novel Morphometric Feature
Descriptor},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2015 - 18th International Conference Munich, Germany, October 5-9,
2015, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {9349},
pages = {621--628},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24553-9\_76},
doi = {10.1007/978-3-319-24553-9\_76},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ChandranZR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/BauerGGRW14,
author = {Stefan Bauer and
Pascal P. Gratz and
Jan Gralla and
Mauricio Reyes and
Roland Wiest},
title = {Towards automatic {MRI} volumetry for treatment selection in acute
ischemic stroke patients},
booktitle = {36th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2014, Chicago, IL, USA, August
26-30, 2014},
pages = {1521--1524},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/EMBC.2014.6943891},
doi = {10.1109/EMBC.2014.6943891},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/embc/BauerGGRW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/BauerPMPSWR14,
author = {Stefan Bauer and
Nicole Porz and
Raphael Meier and
Alessia Pica and
Johannes Slotboom and
Roland Wiest and
Mauricio Reyes},
title = {Interactive segmentation of {MR} images from brain tumor patients},
booktitle = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI}
2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China},
pages = {862--865},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/ISBI.2014.6868007},
doi = {10.1109/ISBI.2014.6868007},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/BauerPMPSWR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CerrolazaVRCBL14,
author = {Juan J. Cerrolaza and
Arantxa Villanueva and
Mauricio Reyes and
Rafael Cabeza and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Marius George Linguraru},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {Generalized Multiresolution Hierarchical Shape Models via Automatic
Landmark Clusterization},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {8675},
pages = {1--8},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10443-0\_1},
doi = {10.1007/978-3-319-10443-0\_1},
timestamp = {Tue, 01 Jun 2021 15:22:56 +0200},
biburl = {https://dblp.org/rec/conf/miccai/CerrolazaVRCBL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/VeraPBTRCMDBRCFKPB14,
author = {Sergio Vera and
Frederic P{\'{e}}rez and
Clara Balust and
Ramon Trueba and
Jordi Rubi{\'{o}} and
Raul Calvo and
Xavier Mazaira and
Anandhan Dhanasingh and
Livia Barazzetti and
Mauricio Reyes and
Mario Ceresa and
Jens Fagertun and
Hans Martin Kjer and
Rasmus R. Paulsen and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester},
editor = {Marius George Linguraru and
Cristina Oyarzun Laura and
Raj Shekhar and
Stefan Wesarg and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Klaus Drechsler and
Yoshinobu Sato and
Marius Erdt},
title = {Patient Specific Simulation for Planning of Cochlear Implantation
Surgery},
booktitle = {Clinical Image-Based Procedures. Translational Research in Medical
Imaging - Third International Workshop, {CLIP} 2014, Held in Conjunction
with {MICCAI} 2014, Boston, MA, USA, September 14, 2014, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {8680},
pages = {101--108},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-13909-8\_13},
doi = {10.1007/978-3-319-13909-8\_13},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/VeraPBTRCMDBRCFKPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GerigSRVL14,
author = {Thomas Gerig and
Kamal Shahim and
Mauricio Reyes and
Thomas Vetter and
Marcel L{\"{u}}thi},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {Spatially Varying Registration Using Gaussian Processes},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8674},
pages = {413--420},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10470-6\_52},
doi = {10.1007/978-3-319-10470-6\_52},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/GerigSRVL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MeierBSWR14,
author = {Raphael Meier and
Stefan Bauer and
Johannes Slotboom and
Roland Wiest and
Mauricio Reyes},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {Patient-Specific Semi-supervised Learning for Postoperative Brain
Tumor Segmentation},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8673},
pages = {714--721},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10404-1\_89},
doi = {10.1007/978-3-319-10404-1\_89},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/MeierBSWR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sibgrapi/BaumbergerRCOAO14,
author = {Christian Baumberger and
Mauricio Reyes and
Mihai Constantinescu and
Radu Olariu and
Edilson de Aguiar and
Thiago Oliveira{-}Santos},
title = {3D Face Reconstruction from Video Using 3D Morphable Model and Silhouette},
booktitle = {27th {SIBGRAPI} Conference on Graphics, Patterns and Images, {SIBGRAPI}
2014, Rio de Janeiro, Brazil, August 27-30, 2014},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/SIBGRAPI.2014.12},
doi = {10.1109/SIBGRAPI.2014.12},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sibgrapi/BaumbergerRCOAO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/LuBNR13,
author = {Huanxiang Lu and
Roland Beisteiner and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Hierarchical segmentation-assisted multimodal registration for {MR}
brain images},
journal = {Comput. Medical Imaging Graph.},
volume = {37},
number = {3},
pages = {234--244},
year = {2013},
url = {https://doi.org/10.1016/j.compmedimag.2013.03.004},
doi = {10.1016/J.COMPMEDIMAG.2013.03.004},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmig/LuBNR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/imst/BauerLMNBR13,
author = {Stefan Bauer and
Huanxiang Lu and
Christian May and
Lutz{-}Peter Nolte and
Philippe B{\"{u}}chler and
Mauricio Reyes},
title = {Integrated segmentation of brain tumor images for radiotherapy and
neurosurgery},
journal = {Int. J. Imaging Syst. Technol.},
volume = {23},
number = {1},
pages = {59--63},
year = {2013},
url = {https://doi.org/10.1002/ima.22037},
doi = {10.1002/IMA.22037},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/imst/BauerLMNBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/ShahimGJR13,
author = {Kamal Shahim and
Orcun Goksel and
Philipp J{\"{u}}rgens and
Mauricio Reyes},
title = {Accuracy improvement in Cranio-Maxillofacial soft tissue simulation
using a muscle embedded meshing approach},
booktitle = {35th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2013, Osaka, Japan, July 3-7,
2013},
pages = {7156--7159},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/EMBC.2013.6611208},
doi = {10.1109/EMBC.2013.6611208},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/ShahimGJR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ShahimJCNR13,
author = {Kamal Shahim and
Philipp J{\"{u}}rgens and
Philippe C. Cattin and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Kensaku Mori and
Ichiro Sakuma and
Yoshinobu Sato and
Christian Barillot and
Nassir Navab},
title = {Prediction of Cranio-Maxillofacial Surgical Planning Using an Inverse
Soft Tissue Modelling Approach},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2013 - 16th International Conference, Nagoya, Japan, September 22-26,
2013, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8149},
pages = {18--25},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40811-3\_3},
doi = {10.1007/978-3-642-40811-3\_3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ShahimJCNR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BauerTKNR13,
author = {Stefan Bauer and
Jean Tessier and
Oliver Krieter and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Bjoern H. Menze and
Georg Langs and
Albert Montillo and
B. Michael Kelm and
Henning M{\"{u}}ller and
Zhuowen Tu},
title = {Integrated Spatio-Temporal Segmentation of Longitudinal Brain Tumor
Imaging Studies},
booktitle = {Medical Computer Vision. Large Data in Medical Imaging - Third International
{MICCAI} Workshop, {MCV} 2013, Nagoya, Japan, September 26, 2013,
Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8331},
pages = {74--83},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-05530-5\_8},
doi = {10.1007/978-3-319-05530-5\_8},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BauerTKNR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/GavaghanOPRKAW12,
author = {Kate A. Gavaghan and
Thiago Oliveira{-}Santos and
Matthias Peterhans and
Mauricio Reyes and
H. Kim and
Sylvain Anderegg and
Stefan Weber},
title = {Evaluation of a portable image overlay projector for the visualisation
of surgical navigation data: phantom studies},
journal = {Int. J. Comput. Assist. Radiol. Surg.},
volume = {7},
number = {4},
pages = {547--556},
year = {2012},
url = {https://doi.org/10.1007/s11548-011-0660-7},
doi = {10.1007/S11548-011-0660-7},
timestamp = {Thu, 11 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cars/GavaghanOPRKAW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/imst/LuNR12,
author = {Huanxiang Lu and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Interest points localization for brain image using landmark-annotated
atlas},
journal = {Int. J. Imaging Syst. Technol.},
volume = {22},
number = {2},
pages = {145--152},
year = {2012},
url = {https://doi.org/10.1002/ima.22015},
doi = {10.1002/IMA.22015},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/imst/LuNR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/BlancSSNR12,
author = {R{\'{e}}mi Blanc and
Christof Seiler and
G{\'{a}}bor Sz{\'{e}}kely and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Statistical model based shape prediction from a combination of direct
observations and various surrogates: Application to orthopaedic research},
journal = {Medical Image Anal.},
volume = {16},
number = {6},
pages = {1156--1166},
year = {2012},
url = {https://doi.org/10.1016/j.media.2012.04.004},
doi = {10.1016/J.MEDIA.2012.04.004},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/BlancSSNR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SeilerPR12,
author = {Christof Seiler and
Xavier Pennec and
Mauricio Reyes},
title = {Capturing the multiscale anatomical shape variability with polyaffine
transformation trees},
journal = {Medical Image Anal.},
volume = {16},
number = {7},
pages = {1371--1384},
year = {2012},
url = {https://doi.org/10.1016/j.media.2012.05.011},
doi = {10.1016/J.MEDIA.2012.05.011},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/SeilerPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/BauerMDSBR12,
author = {Stefan Bauer and
Christian May and
Dimitra D. Dionysiou and
Georgios S. Stamatakos and
Philippe B{\"{u}}chler and
Mauricio Reyes},
title = {Multiscale Modeling for Image Analysis of Brain Tumor Studies},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {59},
number = {1},
pages = {25--29},
year = {2012},
url = {https://doi.org/10.1109/TBME.2011.2163406},
doi = {10.1109/TBME.2011.2163406},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/BauerMDSBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Bou-SleimanSINR12,
author = {Habib Bousleiman and
Christof Seiler and
Tateyuki Iizuka and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Nicholas Ayache and
Herv{\'{e}} Delingette and
Polina Golland and
Kensaku Mori},
title = {Population-Based Design of Mandibular Plates Based on Bone Quality
and Morphology},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2012 - 15th International Conference, Nice, France, October 1-5, 2012,
Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {7510},
pages = {66--73},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33415-3\_9},
doi = {10.1007/978-3-642-33415-3\_9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/Bou-SleimanSINR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SeilerPR12,
author = {Christof Seiler and
Xavier Pennec and
Mauricio Reyes},
editor = {Nicholas Ayache and
Herv{\'{e}} Delingette and
Polina Golland and
Kensaku Mori},
title = {Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation
Statistics},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2012 - 15th International Conference, Nice, France, October 1-5, 2012,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {7511},
pages = {130--137},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33418-4\_17},
doi = {10.1007/978-3-642-33418-4\_17},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SeilerPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1204-0357,
author = {Stefan Bauer and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Skull-stripping for Tumor-bearing Brain Images},
journal = {CoRR},
volume = {abs/1204.0357},
year = {2012},
url = {http://arxiv.org/abs/1204.0357},
eprinttype = {arXiv},
eprint = {1204.0357},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1204-0357.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LuCNR11,
author = {Huanxiang Lu and
Philippe C. Cattin and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Diffusion weighted imaging distortion correction using hybrid multimodal
image registration},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {594--597},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872477},
doi = {10.1109/ISBI.2011.5872477},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/LuCNR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/BauerNR11,
author = {Stefan Bauer and
Lutz{-}Peter Nolte and
Mauricio Reyes},
title = {Segmentation of brain tumor images based on atlas-registration combined
with a Markov-Random-Field lesion growth model},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {2018--2021},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872808},
doi = {10.1109/ISBI.2011.5872808},
timestamp = {Wed, 23 May 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/BauerNR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BauerNR11,
author = {Stefan Bauer and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Gabor Fichtinger and
Anne L. Martel and
Terry M. Peters},
title = {Fully Automatic Segmentation of Brain Tumor Images Using Support Vector
Machine Classification in Combination with Hierarchical Conditional
Random Field Regularization},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2011 - 14th International Conference, Toronto, Canada, September 18-22,
2011, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {6893},
pages = {354--361},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23626-6\_44},
doi = {10.1007/978-3-642-23626-6\_44},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BauerNR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Bou-SleimanRNR11,
author = {Habib Bousleiman and
Lucas E. Ritacco and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Gabor Fichtinger and
Anne L. Martel and
Terry M. Peters},
title = {Minimization of Intra-Operative Shaping of Orthopaedic Fixation Plates:
{A} Population-Based Design},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2011 - 14th International Conference, Toronto, Canada, September 18-22,
2011, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6892},
pages = {409--416},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23629-7\_50},
doi = {10.1007/978-3-642-23629-7\_50},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/Bou-SleimanRNR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SeilerPR11,
author = {Christof Seiler and
Xavier Pennec and
Mauricio Reyes},
editor = {Gabor Fichtinger and
Anne L. Martel and
Terry M. Peters},
title = {Geometry-Aware Multiscale Image Registration via OBBTree-Based Polyaffine
Log-Demons},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2011 - 14th International Conference, Toronto, Canada, September 18-22,
2011, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6892},
pages = {631--638},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23629-7\_77},
doi = {10.1007/978-3-642-23629-7\_77},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SeilerPR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/SeilerPRR11,
author = {Christof Seiler and
Xavier Pennec and
Lucas E. Ritacco and
Mauricio Reyes},
editor = {Benoit M. Dawant and
David R. Haynor},
title = {Femur specific polyaffine model to regularize the log-domain demons
registration},
booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
USA, February 14-16, 2011},
series = {{SPIE} Proceedings},
volume = {7962},
pages = {79620G},
publisher = {{SPIE}},
year = {2011},
url = {https://doi.org/10.1117/12.878316},
doi = {10.1117/12.878316},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miip/SeilerPRR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/KozicWBLRBR10,
author = {Nina Kozic and
Stefan Weber and
Philippe B{\"{u}}chler and
Christian Lutz and
Nils Reimers and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Mauricio Reyes},
title = {Optimisation of orthopaedic implant design using statistical shape
space analysis based on level sets},
journal = {Medical Image Anal.},
volume = {14},
number = {3},
pages = {265--275},
year = {2010},
url = {https://doi.org/10.1016/j.media.2010.02.008},
doi = {10.1016/J.MEDIA.2010.02.008},
timestamp = {Thu, 26 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/KozicWBLRBR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LuRSWSYC10,
author = {Huanxiang Lu and
Mauricio Reyes and
Amira Serijovic and
Stefan Weber and
Yasuo Sakurai and
Hitoshi Yamagata and
Philippe C. Cattin},
title = {Multi-modal diffeomorphic demons registration based on point-wise
mutual information},
booktitle = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
2010},
pages = {372--375},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/ISBI.2010.5490333},
doi = {10.1109/ISBI.2010.5490333},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/LuRSWSYC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SeilerPR10,
author = {Christof Seiler and
Xavier Pennec and
Mauricio Reyes},
title = {Parametric regression of 3D medical images through the exploration
of non-parametric regression models},
booktitle = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
2010},
pages = {452--455},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/ISBI.2010.5490313},
doi = {10.1109/ISBI.2010.5490313},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/SeilerPR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DongLSYZR10,
author = {Xiao Dong and
Huanxiang Lu and
Yasuo Sakurai and
Hitoshi Yamagata and
Guoyan Zheng and
Mauricio Reyes},
editor = {Fei Wang and
Pingkun Yan and
Kenji Suzuki and
Dinggang Shen},
title = {Automated Intervertebral Disc Detection from Low Resolution, Sparse
{MRI} Images for the Planning of Scan Geometries},
booktitle = {Machine Learning in Medical Imaging, First International Workshop,
{MLMI} 2010, Held in Conjunction with {MICCAI} 2010, Beijing, China,
September 20, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6357},
pages = {10--17},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15948-0\_2},
doi = {10.1007/978-3-642-15948-0\_2},
timestamp = {Sat, 05 Sep 2020 18:06:03 +0200},
biburl = {https://dblp.org/rec/conf/miccai/DongLSYZR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KimJNR10,
author = {Hyungmin Kim and
Philipp J{\"{u}}rgens and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Tianzi Jiang and
Nassir Navab and
Josien P. W. Pluim and
Max A. Viergever},
title = {Anatomically-Driven Soft-Tissue Simulation Strategy for Cranio-Maxillofacial
Surgery Using Facial Muscle Template Model},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2010, 13th International Conference, Beijing, China, September 20-24,
2010, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {6361},
pages = {61--68},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15705-9\_8},
doi = {10.1007/978-3-642-15705-9\_8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KimJNR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ReyesBLKCSL09,
author = {Mauricio Reyes and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Zhixi Li and
Nina Kozic and
See Chin and
Ronald M. Summers and
Marius George Linguraru},
title = {Anatomical Variability of Organs Via Principal Factor Analysis from
the Construction of an Abdominal Probabilistic Atlas},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {682--685},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193139},
doi = {10.1109/ISBI.2009.5193139},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ReyesBLKCSL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/KozicBBRNLR09,
author = {Nina Kozic and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Philippe B{\"{u}}chler and
Nils Reimers and
Lutz{-}Peter Nolte and
Marius George Linguraru and
Mauricio Reyes},
title = {Population-Specific Evaluation of Implant Bone Fitting Using {PCA}
Shape Space and Level Sets},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {883--886},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193194},
doi = {10.1109/ISBI.2009.5193194},
timestamp = {Thu, 26 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/KozicBBRNLR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BlancRSS09,
author = {R{\'{e}}mi Blanc and
Mauricio Reyes and
Christof Seiler and
G{\'{a}}bor Sz{\'{e}}kely},
editor = {Guang{-}Zhong Yang and
David J. Hawkes and
Daniel Rueckert and
J. Alison Noble and
Christopher J. Taylor},
title = {Conditional Variability of Statistical Shape Models Based on Surrogate
Variables},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2009, 12th International Conference, London, UK, September 20-24,
2009, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5762},
pages = {84--91},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04271-3\_11},
doi = {10.1007/978-3-642-04271-3\_11},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BlancRSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/09/SeilerBN0P09,
author = {Christof Seiler and
Philippe B{\"{u}}chler and
Lutz{-}Peter Nolte and
Mauricio Reyes and
Rasmus R. Paulsen},
editor = {Nadia Magnenat{-}Thalmann and
Jian J. Zhang and
David D. Feng},
title = {Hierarchical Markov Random Fields Applied to Model Soft Tissue Deformations
on Graphics Hardware},
booktitle = {Recent Advances in the 3D Physiological Human},
pages = {133--148},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-84882-565-9\_9},
doi = {10.1007/978-1-84882-565-9\_9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/09/SeilerBN0P09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miar/KozicBTNR08,
author = {Nina Kozic and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Moritz Tannast and
Lutz{-}Peter Nolte and
Mauricio Reyes},
editor = {Takeyoshi Dohi and
Ichiro Sakuma and
Hongen Liao},
title = {Statistical Shape Space Analysis Based on Level Sets},
booktitle = {Medical Imaging and Augmented Reality, 4th International Workshop,
{MIAR} 2008, Tokyo, Japan, August 1-2, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5128},
pages = {160--167},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79982-5\_18},
doi = {10.1007/978-3-540-79982-5\_18},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miar/KozicBTNR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ReyesLMANB07,
author = {Mauricio Reyes and
Marius George Linguraru and
Kostas Marias and
Nicholas Ayache and
Lutz{-}Peter Nolte and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester},
title = {Statistical Shape Analysis via Principal Factor Analysis},
booktitle = {Proceedings of the 2007 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007},
pages = {1216--1219},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/ISBI.2007.357077},
doi = {10.1109/ISBI.2007.357077},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ReyesLMANB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/hal/ReyesAguirre05,
author = {Mauricio Reyes Aguirre},
title = {Respiratory Motion Compensation in Emission Tomography. (Compensation
du mouvement respiratoire en tomographie d'{\'{e}}mission)},
school = {University of Nice Sophia Antipolis, France},
year = {2005},
url = {https://tel.archives-ouvertes.fr/tel-00327549},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/hal/ReyesAguirre05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ReyesMKBD05,
author = {Mauricio Reyes and
Gr{\'{e}}goire Malandain and
Pierre Malick Koulibaly and
Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Jacques Darcourt},
editor = {James S. Duncan and
Guido Gerig},
title = {Respiratory Motion Correction in Emission Tomography Image Reconstruction},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2005, 8th International Conference, Palm Springs, CA, USA, October
26-29, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3750},
pages = {369--376},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11566489\_46},
doi = {10.1007/11566489\_46},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ReyesMKBD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/BallesterLAA05,
author = {Miguel {\'{A}}ngel Gonz{\'{a}}lez Ballester and
Marius George Linguraru and
Mauricio Reyes Aguirre and
Nicholas Ayache},
editor = {J. Michael Fitzpatrick and
Joseph M. Reinhardt},
title = {On the adequacy of principal factor analysis for the study of shape
variability},
booktitle = {Medical Imaging 2005: Image Processing, San Diego, California, United
States, 12-17 February 2005},
series = {{SPIE} Proceedings},
volume = {5747},
publisher = {{SPIE}},
year = {2005},
url = {https://doi.org/10.1117/12.593333},
doi = {10.1117/12.593333},
timestamp = {Tue, 22 May 2018 12:24:40 +0200},
biburl = {https://dblp.org/rec/conf/miip/BallesterLAA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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