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ORCIDBibTeX records: Dan M. Roden
@article{DBLP:journals/jamia/YanOGKSDPFRSKMW24,
author = {Chao Yan and
Henry H. Ong and
Monika E. Grabowska and
Matthew S. Krantz and
Wu{-}Chen Su and
Alyson L. Dickson and
Josh F. Peterson and
QiPing Feng and
Dan M. Roden and
C. Michael Stein and
Vern Eric Kerchberger and
Bradley A. Malin and
Wei{-}Qi Wei},
title = {Large language models facilitate the generation of electronic health
record phenotyping algorithms},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {9},
pages = {1994--2001},
year = {2024},
url = {https://doi.org/10.1093/jamia/ocae072},
doi = {10.1093/JAMIA/OCAE072},
timestamp = {Thu, 12 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YanOGKSDPFRSKMW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/YanGDLWRSEPFMW24,
author = {Chao Yan and
Monika E. Grabowska and
Alyson L. Dickson and
Bingshan Li and
Zhexing Wen and
Dan M. Roden and
C. Michael Stein and
Peter J. Emb{\'{\i}} and
Josh F. Peterson and
QiPing Feng and
Bradley A. Malin and
Wei{-}Qi Wei},
title = {Leveraging generative {AI} to prioritize drug repurposing candidates
for Alzheimer's disease with real-world clinical validation},
journal = {npj Digit. Medicine},
volume = {7},
number = {1},
year = {2024},
url = {https://doi.org/10.1038/s41746-024-01038-3},
doi = {10.1038/S41746-024-01038-3},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/YanGDLWRSEPFMW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StrayerZYVBHSBJPBEEPWSCR23,
author = {Nick Strayer and
Siwei Zhang and
Lydia Yao and
Tess Vessels and
Cosmin Adrian Bejan and
Ryan S. Hsi and
Jana K. Shirey{-}Rice and
Justin M. Balko and
Douglas B. Johnson and
Elizabeth J. Phillips and
Alex Bick and
Todd L. Edwards and
Digna R. Velez Edwards and
Jill M. Pulley and
Quinn Stanton Wells and
Michael R. Savona and
Nancy J. Cox and
Dan M. Roden and
Douglas M. Ruderfer and
Yaomin Xu},
title = {Interactive network-based clustering and investigation of multimorbidity
association matrices with associationSubgraphs},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac780},
doi = {10.1093/BIOINFORMATICS/BTAC780},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StrayerZYVBHSBJPBEEPWSCR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShueySABBBCCGLMMOPRRSSST23,
author = {Megan M. Shuey and
William W. Stead and
Ida Aka and
April L. Barnado and
Lisa Bastarache and
Elly Brokamp and
Meredith Campbell and
Robert J. Carroll and
Jeffrey A. Goldstein and
Adam Lewis and
Beth A. Malow and
Jonathan D. Mosley and
Travis Osterman and
Dolly A Padovani{-}Claudio and
Andrea Ramirez and
Dan M. Roden and
Bryce A Schuler and
Edward Siew and
Jennifer Sucre and
Isaac Thomsen and
Rory J. Tinker and
Sara Van Driest and
Colin Walsh and
Jeremy L. Warner and
Quinn Stanton Wells and
Lee E. Wheless},
title = {Next-generation phenotyping: introducing phecodeX for enhanced discovery
research in medical phenomics},
journal = {Bioinform.},
volume = {39},
number = {10},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad655},
doi = {10.1093/BIOINFORMATICS/BTAD655},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShueySABBBCCGLMMOPRRSSST23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SuliemanCCNMMRH22,
author = {Lina M. Sulieman and
Robert M. Cronin and
Robert J. Carroll and
Karthik Natarajan and
Kayla Marginean and
Brandy Mapes and
Dan M. Roden and
Paul A. Harris and
Andrea H. Ramirez},
title = {Comparing medical history data derived from electronic health records
and survey answers in the \emph{All of Us} Research Program},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {7},
pages = {1131--1141},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac046},
doi = {10.1093/JAMIA/OCAC046},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SuliemanCCNMMRH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WileyFGRSWBCDGG22,
author = {Ken Wiley and
Laura Findley and
Madison Goldrich and
Tejinder K. Rakhra{-}Burris and
Ana Stevens and
Pamela Williams and
Carol J. Bult and
Rex L. Chisholm and
Patricia Deverka and
Geoffrey S. Ginsburg and
Eric D. Green and
Gail P. Jarvik and
George A. Mensah and
Erin Ramos and
Mary V. Relling and
Dan M. Roden and
Robb Rowley and
Gil Alterovitz and
Samuel J. Aronson and
Lisa Bastarache and
James J. Cimino and
Erin L. Crowgey and
Guilherme Del Fiol and
Robert R. Freimuth and
Mark A. Hoffman and
Janina M. Jeff and
Kevin B. Johnson and
Kensaku Kawamoto and
Subha Madhavan and
Eneida A. Mendon{\c{c}}a and
Lucila Ohno{-}Machado and
Siddharth Pratap and
Casey Overby Taylor and
Marylyn D. Ritchie and
Nephi Walton and
Chunhua Weng and
Teresa Zayas{-}Cab{\'{a}}n and
Teri A. Manolio and
Marc S. Williams},
title = {A research agenda to support the development and implementation of
genomics-based clinical informatics tools and resources},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {8},
pages = {1342--1349},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac057},
doi = {10.1093/JAMIA/OCAC057},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WileyFGRSWBCDGG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/RamirezSSHQRLMB22,
author = {Andrea H. Ramirez and
Lina M. Sulieman and
David J. Schlueter and
Alese E. Halvorson and
Jun Qian and
Francis Ratsimbazafy and
Roxana Loperena{-}Cortes and
Kelsey R. Mayo and
Melissa A. Basford and
Nicole Deflaux and
Karthik Muthuraman and
Karthik Natarajan and
Abel N. Kho and
Hua Xu and
Consuelo H. Wilkins and
Hoda Anton{-}Culver and
Eric Boerwinkle and
Mine Cicek and
Cheryl R. Clark and
Elizabeth Cohn and
Lucila Ohno{-}Machado and
Sheri D. Schully and
Brian K. Ahmedani and
Maria Argos and
Robert M. Cronin and
Christopher J. O'Donnell and
Mona Fouad and
David B. Goldstein and
Philip Greenland and
Scott J. Hebbring and
Elizabeth W. Karlson and
Parinda Khatri and
Bruce Korf and
Jordan W. Smoller and
Stephen Sodeke and
John Wilbanks and
Justin Hentges and
Stephen Mockrin and
Christopher Lunt and
Stephanie A. Devaney and
Kelly Gebo and
Joshua C. Denny and
Robert J. Carroll and
David Glazer and
Paul A. Harris and
George Hripcsak and
Anthony A. Philippakis and
Dan M. Roden},
title = {The \emph{All of Us} Research Program: Data quality, utility, and
diversity},
journal = {Patterns},
volume = {3},
number = {8},
pages = {100570},
year = {2022},
url = {https://doi.org/10.1016/j.patter.2022.100570},
doi = {10.1016/J.PATTER.2022.100570},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/RamirezSSHQRLMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DelozierSBTWSGP21,
author = {Sarah DeLozier and
Peter Speltz and
Jason Brito and
Leigh Anne Tang and
Janey Wang and
Joshua C. Smith and
Dario A. Giuse and
Elizabeth Phillips and
Kristina Williams and
T. Stephen Strickland and
Giovanni Davogustto and
Dan M. Roden and
Joshua C. Denny},
title = {Real-time clinical note monitoring to detect conditions for rapid
follow-up: {A} case study of clinical trial enrollment in drug-induced
torsades de pointes and Stevens-Johnson syndrome},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {1},
pages = {126--131},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa213},
doi = {10.1093/JAMIA/OCAA213},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DelozierSBTWSGP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuN0SFCLLCSPRDW21,
author = {Patrick Wu and
Scott D. Nelson and
Juan Zhao and
Cosby A. Stone Jr. and
QiPing Feng and
Qingxia Chen and
Eric A. Larson and
Bingshan Li and
Nancy J. Cox and
C. Michael Stein and
Elizabeth Phillips and
Dan M. Roden and
Joshua C. Denny and
Wei{-}Qi Wei},
title = {{DDIWAS:} High-throughput electronic health record-based screening
of drug-drug interactions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {7},
pages = {1421--1430},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab019},
doi = {10.1093/JAMIA/OCAB019},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WuN0SFCLLCSPRDW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhengWOWSDKDFCP21,
author = {Neil S. Zheng and
Jeremy L. Warner and
Travis J. Osterman and
Quinn Stanton Wells and
Xiao{-}Ou Shu and
Stephen A. Deppen and
Seth J. Karp and
Shon Dwyer and
QiPing Feng and
Nancy J. Cox and
Josh F. Peterson and
C. Michael Stein and
Dan M. Roden and
Kevin B. Johnson and
Wei{-}Qi Wei},
title = {A retrospective approach to evaluating potential adverse outcomes
associated with delay of procedures for cardiovascular and cancer-related
diagnoses in the context of {COVID-19}},
journal = {J. Biomed. Informatics},
volume = {113},
pages = {103657},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103657},
doi = {10.1016/J.JBI.2020.103657},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ZhengWOWSDKDFCP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DeLozierBMWFBFR21,
author = {Sarah DeLozier and
Sarah Bland and
Melissa McPheeters and
Quinn Stanton Wells and
Eric Farber{-}Eger and
Cosmin Adrian Bejan and
Daniel Fabbri and
S. Trent Rosenbloom and
Dan M. Roden and
Kevin B. Johnson and
Wei{-}Qi Wei and
Josh F. Peterson and
Lisa Bastarache},
title = {Phenotyping coronavirus disease 2019 during a global health pandemic:
Lessons learned from the characterization of an early cohort},
journal = {J. Biomed. Informatics},
volume = {117},
pages = {103777},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103777},
doi = {10.1016/J.JBI.2021.103777},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/DeLozierBMWFBFR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ZhengFKZECSRDW20,
author = {Neil S. Zheng and
QiPing Feng and
Vern Eric Kerchberger and
Juan Zhao and
Todd L. Edwards and
Nancy J. Cox and
C. Michael Stein and
Dan M. Roden and
Joshua C. Denny and
Wei{-}Qi Wei},
title = {PheMap: a multi-resource knowledge base for high-throughput phenotyping
within electronic health records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {11},
pages = {1675--1687},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa104},
doi = {10.1093/JAMIA/OCAA104},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ZhengFKZECSRDW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/CollinsBKZAFKLG20,
author = {Ryan L. Collins and
Harrison Brand and
Konrad J. Karczewski and
Xuefang Zhao and
Jessica Alf{\"{o}}ldi and
Laurent C. Francioli and
Amit V. Khera and
Chelsea Lowther and
Laura D. Gauthier and
Harold Wang and
Nicholas A. Watts and
Matthew Solomonson and
Alexander Baumann and
Ruchi Munshi and
Mark Walker and
Christopher W. Whelan and
Yongqing Huang and
Ted Brookings and
Ted Sharpe and
Matthew R. Stone and
Elise Valkanas and
Jack Fu and
Grace Tiao and
Kristen M. Laricchia and
Valent{\'{\i}}n Ruano{-}Rubio and
Christine Stevens and
Namrata Gupta and
Caroline Cusick and
Lauren Margolin and
Irina M. Armean and
Eric Banks and
Louis Bergelson and
Kristian Cibulskis and
Kristen M. Connolly and
Miguel Covarrubias and
Beryl B. Cummings and
Mark J. Daly and
Stacey Donnelly and
Yossi Farjoun and
Steven Ferriera and
Stacey Gabriel and
Jeff Gentry and
Thibault Jeandet and
Diane Kaplan and
Christopher Llanwarne and
Eric V. Minikel and
Benjamin M. Neale and
Sam Novod and
Anne H. O'Donnell{-}Luria and
Nikelle Petrillo and
Timothy Poterba and
David Roazen and
Andrea Saltzman and
Kaitlin E. Samocha and
Molly Schleicher and
Cotton Seed and
Jos{\'{e}} Soto and
Kathleen Tibbetts and
Charlotte Tolonen and
Christopher Vittal and
Gordon Wade and
Arcturus Wang and
Qingbo Wang and
James S. Ware and
Ben Weisburd and
Nicola Whiffin and
Carlos A. Aguilar Salinas and
Tariq Ahmad and
Christine M. Albert and
Diego Ardissino and
Gil Atzmon and
John Barnard and
Laurent Beaugerie and
Emelia J. Benjamin and
Michael Boehnke and
Lori L. Bonnycastle and
Erwin P. Bottinger and
Donald W. Bowden and
Matthew J. Bown and
John C. Chambers and
Juliana C. Chan and
Daniel Chasman and
Judy Cho and
Mina K. Chung and
Bruce Cohen and
Adolfo Correa and
Dana Dabelea and
Dawood Darbar and
Ravindranath Duggirala and
Jos{\'{e}}e Dupuis and
Patrick T. Ellinor and
Roberto Elosua and
Jeanette Erdmann and
T{\~{o}}nu Esko and
Martti F{\"{a}}rkkil{\"{a}} and
Jose Florez and
Andre Franke and
Gad Getz and
Benjamin Glaser and
Stephen J. Glatt and
David Goldstein and
Clicerio Gonzalez and
Leif Groop and
Christopher A. Haiman and
Craig Hanis and
Matthew Harms and
Mikko Hiltunen and
Matti M. Holi and
Christina M. Hultman and
Mikko Kallela and
Jaakko Kaprio and
Sekar Kathiresan and
Bong{-}Jo Kim and
Young Jin Kim and
George Kirov and
Jaspal Kooner and
Seppo Koskinen and
Harlan M. Krumholz and
Subra Kugathasan and
Soo Heon Kwak and
Markku Laakso and
Terho Lehtim{\"{a}}ki and
Ruth J. F. Loos and
Steven A. Lubitz and
Ronald C. W. Ma and
Daniel G. MacArthur and
Jaume Marrugat and
Kari M. Mattila and
Steven A. McCarroll and
Mark I. McCarthy and
Dermot McGovern and
Ruth McPherson and
James B. Meigs and
Olle Melander and
Andres Metspalu and
Peter M. Nilsson and
Michael C. O'Donovan and
Dost {\"{O}}ng{\"{u}}r and
Lorena Orozco and
Michael J. Owen and
Colin N. A. Palmer and
Aarno Palotie and
Kyong Soo Park and
Carlos Pato and
Ann E. Pulver and
Nazneen Rahman and
Anne M. Remes and
John D. Rioux and
Samuli Ripatti and
Dan M. Roden and
Danish Saleheen and
Veikko Salomaa and
Nilesh J. Samani and
Jeremiah Scharf and
Heribert Schunkert and
Moore B. Shoemaker and
Pamela Sklar and
Hilkka Soininen and
Harry Sokol and
Tim Spector and
Patrick F. Sullivan and
Jaana Suvisaari and
E. Shyong Tai and
Yik Ying Teo and
Tuomi Tiinamaija and
Ming Tsuang and
Dan Turner and
Teresa Tusie{-}Luna and
Erkki Vartiainen and
Hugh Watkins and
Rinse K. Weersma and
Maija Wessman and
James G. Wilson and
Ramnik J. Xavier and
Kent D. Taylor and
Henry J. Lin and
Stephen S. Rich and
Wendy S. Post and
Yii{-}Der Ida Chen and
Jerome I. Rotter and
Chad Nusbaum and
Anthony A. Philippakis and
Eric S. Lander and
Michael E. Talkowski},
title = {A structural variation reference for medical and population genetics},
journal = {Nat.},
volume = {581},
number = {7809},
pages = {444--451},
year = {2020},
url = {https://doi.org/10.1038/s41586-020-2287-8},
doi = {10.1038/S41586-020-2287-8},
timestamp = {Wed, 05 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/CollinsBKZAFKLG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DelozierSBTWSGP20,
author = {Sarah DeLozier and
Peter Speltz and
Jason Brito and
Leigh Anne Tang and
Janey Wang and
Joshua C. Smith and
Dario A. Giuse and
Elizabeth Phillips and
Kristina Williams and
Teresa Strickland and
Giovanni Davogustto and
Dan M. Roden and
Joshua C. Denny},
title = {Real-time Clinical Note Monitoring to Detect Conditions for Follow-up:
a Case Study of Clinical Trial Enrollment in Drug-induced Torsades
de Pointes and Stevens-Johnson Syndrome},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3412602-1.4606144/3413400-1.4606141},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/DelozierSBTWSGP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HumesLBMDSQWCGH20,
author = {Izabelle P. Humes and
Roxana Loperena{-}Cortes and
Melissa A. Basford and
Kelsey R. Mayo and
Joseph DiPaolo and
David J. Schlueter and
Jun Qian and
Wei{-}Qi Wei and
Robert J. Carroll and
David Glazer and
Paul A. Harris and
Anthony A. Philippakis and
Dan M. Roden and
Andrea H. Ramirez},
title = {The All of Us Research Program Researcher Workbench Phenotype Library:
Five Disease Implementations},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3416154-1.4605512/3417113-1.4605509},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HumesLBMDSQWCGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RamirezMCMBGHPR20,
author = {Andrea H. Ramirez and
Kelsey R. Mayo and
Robert J. Carroll and
Karthik Muthuraman and
Melissa A. Basford and
David Glazer and
Paul A. Harris and
Anthony A. Philippakis and
Dan M. Roden},
title = {The All of Us Research Program Researcher Workbench: Cloud based access
and analytics to advance precision medicine},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t006-1.4604857/t006-1.4604858/3415561-1.4604874/3416937-1.4604871},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RamirezMCMBGHPR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BastaracheHGBDZ19,
author = {Lisa Bastarache and
Jacob J. Hughey and
Jeffery A. Goldstein and
Julie A. Bastraache and
Satya Das and
Neil Charles Zaki and
Chenjie Zeng and
Leigh Anne Tang and
Dan M. Roden and
Joshua C. Denny},
title = {Improving the phenotype risk score as a scalable approach to identifying
patients with Mendelian disease},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {12},
pages = {1437--1447},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocz179},
doi = {10.1093/JAMIA/OCZ179},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BastaracheHGBDZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/SmithCDRJM18,
author = {Joshua C. Smith and
Qingxia Chen and
Joshua C. Denny and
Dan M. Roden and
Kevin B. Johnson and
Randolph A. Miller},
title = {Evaluation of a Novel System to Enhance Clinicians' Recognition of
Preadmission Adverse Drug Reactions},
journal = {Appl. Clin. Inform.},
volume = {09},
number = {02},
pages = {313--325},
year = {2018},
url = {https://doi.org/10.1055/s-0038-1646963},
doi = {10.1055/S-0038-1646963},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aci/SmithCDRJM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiCBMRDD18,
author = {Leena Choi and
Robert J. Carroll and
Cole Beck and
Jonathan D. Mosley and
Dan M. Roden and
Joshua C. Denny and
Sara L. Van Driest},
title = {Evaluating statistical approaches to leverage large clinical datasets
for uncovering therapeutic and adverse medication effects},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2988--2996},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty306},
doi = {10.1093/BIOINFORMATICS/BTY306},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiCBMRDD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PachecoRKCSCSMA18,
author = {Jennifer A. Pacheco and
Luke V. Rasmussen and
Richard C. Kiefer and
Thomas R. Campion Jr. and
Peter Speltz and
Robert J. Carroll and
Sarah C. Stallings and
Huan Mo and
Monika Ahuja and
Guoqian Jiang and
Eric R. LaRose and
Peggy L. Peissig and
Ning Shang and
Barbara Benoit and
Vivian S. Gainer and
Kenneth Borthwick and
Kathryn L. Jackson and
Ambrish Sharma and
Andy Yizhou Wu and
Abel N. Kho and
Dan M. Roden and
Jyotishman Pathak and
Joshua C. Denny and
William K. Thompson},
title = {A case study evaluating the portability of an executable computable
phenotype algorithm across multiple institutions and electronic health
record environments},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {11},
pages = {1540--1546},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocy101},
doi = {10.1093/JAMIA/OCY101},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PachecoRKCSCSMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/TeixeiraWCMV17,
author = {Pedro L. Teixeira and
Wei{-}Qi Wei and
Robert M. Cronin and
Huan Mo and
Jacob P. VanHouten and
Robert J. Carroll and
Eric LaRose and
Lisa Bastarache and
S. Trent Rosenbloom and
Todd L. Edwards and
Dan M. Roden and
Thomas A. Lasko and
Richard A. Dart and
Anne M. Nikolai and
Peggy L. Peissig and
Joshua C. Denny},
title = {Evaluating electronic health record data sources and algorithmic approaches
to identify hypertensive individuals},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {1},
pages = {162--171},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocw071},
doi = {10.1093/JAMIA/OCW071},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/TeixeiraWCMV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/LeeJWSCFLRDX17,
author = {Hee{-}Jin Lee and
Min Jiang and
Yonghui Wu and
Christian Shaffer and
John H. Cleator and
Eitan Friedman and
Joshua P. Lewis and
Dan M. Roden and
Joshua C. Denny and
Hua Xu},
title = {A comparative study of different methods for automatic identification
of clopidogrel-induced bleedings in electronic health records},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a030-1.3521732/a031-1.3521729},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cri/LeeJWSCFLRDX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/WileyVSARPD17,
author = {Laura K. Wiley and
Jacob P. VanHouten and
David Samuels and
Melinda Aldrich and
Dan M. Roden and
Josh F. Peterson and
Joshua C. Denny},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among
European and African American Individuals in a Clinical Population},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {545--556},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/wiley.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/WileyVSARPD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KirbySRBGPPTPCE16,
author = {Jacqueline Kirby and
Peter Speltz and
Luke V. Rasmussen and
Melissa A. Basford and
Omri Gottesman and
Peggy L. Peissig and
Jennifer A. Pacheco and
Gerard Tromp and
Jyotishman Pathak and
David S. Carrell and
Stephen B. Ellis and
Todd Lingren and
William K. Thompson and
Guergana Savova and
Jonathan L. Haines and
Dan M. Roden and
Paul A. Harris and
Joshua C. Denny},
title = {PheKB: a catalog and workflow for creating electronic phenotype algorithms
for transportability},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {6},
pages = {1046--1052},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv202},
doi = {10.1093/JAMIA/OCV202},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KirbySRBGPPTPCE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuACLPDLSXRJLJW15,
author = {Hua Xu and
Melinda C. Aldrich and
Qingxia Chen and
Hongfang Liu and
Neeraja B. Peterson and
Qi Dai and
Mia A. Levy and
Anushi Shah and
Han Xue and
Xiaoyang Ruan and
Min Jiang and
Ying Li and
Jamii St Julien and
Jeremy L. Warner and
Carol Friedman and
Dan M. Roden and
Joshua C. Denny},
title = {Validating drug repurposing signals using electronic health records:
a case study of metformin associated with reduced cancer mortality},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {1},
pages = {179--191},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2014-002649},
doi = {10.1136/AMIAJNL-2014-002649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/XuACLPDLSXRJLJW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MoTRPJKZXMCLMNW15,
author = {Huan Mo and
William K. Thompson and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Guoqian Jiang and
Richard C. Kiefer and
Qian Zhu and
Jie Xu and
Enid N. H. Montague and
David S. Carrell and
Todd Lingren and
Frank D. Mentch and
Yizhao Ni and
Firas H. Wehbe and
Peggy L. Peissig and
Gerard Tromp and
Eric B. Larson and
Christopher G. Chute and
Jyotishman Pathak and
Joshua C. Denny and
Peter Speltz and
Abel N. Kho and
Gail P. Jarvik and
Cosmin Adrian Bejan and
Marc S. Williams and
Kenneth Borthwick and
Terrie E. Kitchner and
Dan M. Roden and
Paul A. Harris},
title = {Desiderata for computable representations of electronic health records-driven
phenotype algorithms},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {6},
pages = {1220--1230},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv112},
doi = {10.1093/JAMIA/OCV112},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MoTRPJKZXMCLMNW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SunZJWWIZBRDAXZ15,
author = {Jingchun Sun and
Min Zhao and
Peilin Jia and
Lily Wang and
Yonghui Wu and
Carissa Iverson and
Yubo Zhou and
Erica A. Bowton and
Dan M. Roden and
Joshua C. Denny and
Melinda C. Aldrich and
Hua Xu and
Zhongming Zhao},
title = {Deciphering Signaling Pathway Networks to Understand the Molecular
Mechanisms of Metformin Action},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {6},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004202},
doi = {10.1371/JOURNAL.PCBI.1004202},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SunZJWWIZBRDAXZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HeatherlyDHRM14,
author = {Raymond Heatherly and
Joshua C. Denny and
Jonathan L. Haines and
Dan M. Roden and
Bradley A. Malin},
title = {Size matters: How population size influences genotype-phenotype association
studies in anonymized data},
journal = {J. Biomed. Informatics},
volume = {52},
pages = {243--250},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.07.005},
doi = {10.1016/J.JBI.2014.07.005},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/HeatherlyDHRM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/JeffBGRDKAMMAJGSDBPJCRHC14,
author = {Janina M. Jeff and
Kristin Brown{-}Gentry and
Robert J. Goodloe and
Marylyn D. Ritchie and
Joshua C. Denny and
Abel N. Kho and
Loren L. Armstrong and
Bob McClellan Jr. and
Ping Mayo and
Melissa Allen and
Hailing Jin and
Niloufar B. Gillani and
Nathalie Schnetz{-}Boutaud and
Holli H. Dilks and
Melissa A. Basford and
Jennifer A. Pacheco and
Gail P. Jarvik and
Rex L. Chisholm and
Dan M. Roden and
M. Geoffrey Hayes and
Dana C. Crawford},
editor = {Anna Isabel Esparcia{-}Alc{\'{a}}zar and
Antonio Miguel Mora},
title = {Replication of {SCN5A} Associations with Electrocardiographic Traits
in African Americans from Clinical and Epidemiologic Studies},
booktitle = {Applications of Evolutionary Computation - 17th European Conference,
EvoApplications 2014, Granada, Spain, April 23-25, 2014, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {8602},
pages = {939--951},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-45523-4\_76},
doi = {10.1007/978-3-662-45523-4\_76},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/evoW/JeffBGRDKAMMAJGSDBPJCRHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OetjensBBDBDWRC14,
author = {Matthew Oetjens and
William S. Bush and
Kelly A. Birdwell and
Holli H. Dilks and
Erica A. Bowton and
Joshua C. Denny and
Russell A. Wilke and
Dan M. Roden and
Dana C. Crawford},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Utilization of an EMR-Biorepository to Identify the Genetic Predictors
of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {253--264},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/oetjens.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OetjensBBDBDWRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuJOBRJBPCWRMRCD11,
author = {Hua Xu and
Min Jiang and
Matthew Oetjens and
Erica A. Bowton and
Andrea H. Ramirez and
Janina M. Jeff and
Melissa A. Basford and
Jill M. Pulley and
James D. Cowan and
Xiaoming Wang and
Marylyn D. Ritchie and
Daniel R. Masys and
Dan M. Roden and
Dana C. Crawford and
Joshua C. Denny},
title = {Facilitating pharmacogenetic studies using electronic health records
and natural-language processing: a case study of warfarin},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {387--391},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000208},
doi = {10.1136/AMIAJNL-2011-000208},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/XuJOBRJBPCWRMRCD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PendergrassDRCR11,
author = {Sarah A. Pendergrass and
Scott M. Dudek and
Dan M. Roden and
Dana C. Crawford and
Marylyn D. Ritchie},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Visual Integration of Results from a Large Dna Biobank (Biovu) Using
Synthesis-View},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {265--275},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/pendergrass.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PendergrassDRCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DennyRBPBBWMRC10,
author = {Joshua C. Denny and
Marylyn D. Ritchie and
Melissa A. Basford and
Jill M. Pulley and
Lisa Bastarache and
Kristin Brown{-}Gentry and
Deede Wang and
Daniel R. Masys and
Dan M. Roden and
Dana C. Crawford},
title = {PheWAS: demonstrating the feasibility of a phenome-wide scan to discover
gene-disease associations},
journal = {Bioinform.},
volume = {26},
number = {9},
pages = {1205--1210},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq126},
doi = {10.1093/BIOINFORMATICS/BTQ126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DennyRBPBBWMRC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SchildcroutBPMRWCKCPKD10,
author = {Jonathan S. Schildcrout and
Melissa A. Basford and
Jill M. Pulley and
Daniel R. Masys and
Dan M. Roden and
Deede Wang and
Christopher G. Chute and
Iftikhar J. Kullo and
David Carrell and
Peggy L. Peissig and
Abel N. Kho and
Joshua C. Denny},
title = {An analytical approach to characterize morbidity profile dissimilarity
between distinct cohorts using electronic medical records},
journal = {J. Biomed. Informatics},
volume = {43},
number = {6},
pages = {914--923},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.07.011},
doi = {10.1016/J.JBI.2010.07.011},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SchildcroutBPMRWCKCPKD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MotsingerDBRR06,
author = {Alison A. Motsinger and
Brian S. Donahue and
Nancy J. Brown and
Dan M. Roden and
Marylyn D. Ritchie},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Risk Factor Interactions and Genetic Effects Associated with Post-Operative
Atrial Fibrillation},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {584--595},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/motsinger.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MotsingerDBRR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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