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ORCIDBibTeX records: Alberto Santamaría-Pang
@article{DBLP:journals/corr/abs-2401-07654,
author = {Ho Hin Lee and
Yu Gu and
Theodore Zhao and
Yanbo Xu and
Jianwei Yang and
Naoto Usuyama and
Cliff Wong and
Mu Wei and
Bennett A. Landman and
Yuankai Huo and
Alberto Santamar{\'{\i}}a{-}Pang and
Hoifung Poon},
title = {Foundation Models for Biomedical Image Segmentation: {A} Survey},
journal = {CoRR},
volume = {abs/2401.07654},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.07654},
doi = {10.48550/ARXIV.2401.07654},
eprinttype = {arXiv},
eprint = {2401.07654},
timestamp = {Thu, 01 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-07654.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-03814,
author = {Ammar Ahmed Pallikonda Latheef and
Sejal Ghate and
Zhipeng Hui and
Alberto Santamar{\'{\i}}a{-}Pang and
Ivan Tarapov and
Haris I. Sair and
Craig K. Jones},
title = {Deep Labeling of fMRI Brain Networks},
journal = {CoRR},
volume = {abs/2305.03814},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.03814},
doi = {10.48550/ARXIV.2305.03814},
eprinttype = {arXiv},
eprint = {2305.03814},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-03814.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-05598,
author = {Ho Hin Lee and
Alberto Santamar{\'{\i}}a{-}Pang and
Jameson Merkow and
Ozan Oktay and
Fernando P{\'{e}}rez{-}Garc{\'{\i}}a and
Javier Alvarez{-}Valle and
Ivan Tarapov},
title = {Region-based Contrastive Pretraining for Medical Image Retrieval with
Anatomic Query},
journal = {CoRR},
volume = {abs/2305.05598},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.05598},
doi = {10.48550/ARXIV.2305.05598},
eprinttype = {arXiv},
eprint = {2305.05598},
timestamp = {Mon, 15 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-05598.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-13752,
author = {Asma Ben Abacha and
Alberto Santamar{\'{\i}}a{-}Pang and
Ho Hin Lee and
Jameson Merkow and
Qin Cai and
Surya Teja Devarakonda and
Abdullah Islam and
Julia Gong and
Matthew P. Lungren and
Thomas Lin and
Noel C. F. Codella and
Ivan Tarapov},
title = {3D-MIR: {A} Benchmark and Empirical Study on 3D Medical Image Retrieval
in Radiology},
journal = {CoRR},
volume = {abs/2311.13752},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.13752},
doi = {10.48550/ARXIV.2311.13752},
eprinttype = {arXiv},
eprint = {2311.13752},
timestamp = {Fri, 01 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-13752.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isvc/GhateSTSJ22,
author = {Sejal Ghate and
Alberto Santamar{\'{\i}}a{-}Pang and
Ivan Tarapov and
Haris I. Sair and
Craig K. Jones},
editor = {George Bebis and
Bo Li and
Angela Yao and
Yang Liu and
Ye Duan and
Manfred Lau and
Rajiv Khadka and
Ana Crisan and
Remco Chang},
title = {Deep Labeling of fMRI Brain Networks Using Cloud Based Processing},
booktitle = {Advances in Visual Computing - 17th International Symposium, {ISVC}
2022, San Diego, CA, USA, October 3-5, 2022, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13598},
pages = {275--283},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-20713-6\_21},
doi = {10.1007/978-3-031-20713-6\_21},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isvc/GhateSTSJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-08200,
author = {Sejal Ghate and
Alberto Santamar{\'{\i}}a{-}Pang and
Ivan Tarapov and
Haris I. Sair and
Craig K. Jones},
title = {Deep Labeling of fMRI Brain Networks Using Cloud Based Processing},
journal = {CoRR},
volume = {abs/2209.08200},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.08200},
doi = {10.48550/ARXIV.2209.08200},
eprinttype = {arXiv},
eprint = {2209.08200},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-08200.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ChowdhurySKT21,
author = {Aritra Chowdhury and
Alberto Santamar{\'{\i}}a{-}Pang and
James R. Kubricht and
Peter H. Tu},
title = {Emergent Symbolic Language Based Deep Medical Image Classification},
booktitle = {18th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2021, Nice, France, April 13-16, 2021},
pages = {689--692},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/ISBI48211.2021.9434073},
doi = {10.1109/ISBI48211.2021.9434073},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ChowdhurySKT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-12473,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Jianwei Qiu and
Aritra Chowdhury and
James Kubricht and
Peter H. Tu and
Naresh Iyer and
Nurali Virani},
title = {Adversarial Attacks with Time-Scale Representations},
journal = {CoRR},
volume = {abs/2107.12473},
year = {2021},
url = {https://arxiv.org/abs/2107.12473},
eprinttype = {arXiv},
eprint = {2107.12473},
timestamp = {Fri, 30 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-12473.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijsc/KubrichtSDCT20,
author = {James R. Kubricht and
Alberto Santamar{\'{\i}}a{-}Pang and
Chinmaya Devaraj and
Aritra Chowdhury and
Peter H. Tu},
title = {Emergent Languages from Pretrained Embeddings Characterize Latent
Concepts in Dynamic Imagery},
journal = {Int. J. Semantic Comput.},
volume = {14},
number = {3},
pages = {357--373},
year = {2020},
url = {https://doi.org/10.1142/S1793351X20400140},
doi = {10.1142/S1793351X20400140},
timestamp = {Mon, 14 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijsc/KubrichtSDCT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/DevarajCJKTS20,
author = {Chinmaya Devaraj and
Aritra Chowdhury and
Arpit Jain and
James R. Kubricht and
Peter H. Tu and
Alberto Santamar{\'{\i}}a{-}Pang},
title = {From Symbols to Signals: Symbolic Variational Autoencoders},
booktitle = {2020 {IEEE} International Conference on Acoustics, Speech and Signal
Processing, {ICASSP} 2020, Barcelona, Spain, May 4-8, 2020},
pages = {3317--3321},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ICASSP40776.2020.9054016},
doi = {10.1109/ICASSP40776.2020.9054016},
timestamp = {Thu, 23 Jul 2020 16:19:28 +0200},
biburl = {https://dblp.org/rec/conf/icassp/DevarajCJKTS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ChowdhuryKSTS20,
author = {Aritra Chowdhury and
James R. Kubricht and
Anup Sood and
Peter H. Tu and
Alberto Santamar{\'{\i}}a{-}Pang},
title = {Escell: Emergent Symbolic Cellular Language},
booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2020, Iowa City, IA, USA, April 3-7, 2020},
pages = {1604--1607},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ISBI45749.2020.9098343},
doi = {10.1109/ISBI45749.2020.9098343},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ChowdhuryKSTS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Santamaria-Pang20,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
James Kubricht and
Aritra Chowdhury and
Chitresh Bhushan and
Peter H. Tu},
editor = {Anne L. Martel and
Purang Abolmaesumi and
Danail Stoyanov and
Diana Mateus and
Maria A. Zuluaga and
S. Kevin Zhou and
Daniel Racoceanu and
Leo Joskowicz},
title = {Towards Emergent Language Symbolic Semantic Segmentation and Model
Interpretability},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12261},
pages = {326--334},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59710-8\_32},
doi = {10.1007/978-3-030-59710-8\_32},
timestamp = {Tue, 01 Jun 2021 15:22:56 +0200},
biburl = {https://dblp.org/rec/conf/miccai/Santamaria-Pang20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-09448,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
James Kubricht and
Aritra Chowdhury and
Chitresh Bhushan and
Peter H. Tu},
title = {Towards Emergent Language Symbolic Semantic Segmentation and Model
Interpretability},
journal = {CoRR},
volume = {abs/2007.09448},
year = {2020},
url = {https://arxiv.org/abs/2007.09448},
eprinttype = {arXiv},
eprint = {2007.09448},
timestamp = {Tue, 28 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-09448.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-09469,
author = {Aritra Chowdhury and
James R. Kubricht and
Anup Sood and
Peter H. Tu and
Alberto Santamar{\'{\i}}a{-}Pang},
title = {{ESCELL:} Emergent Symbolic Cellular Language},
journal = {CoRR},
volume = {abs/2007.09469},
year = {2020},
url = {https://arxiv.org/abs/2007.09469},
eprinttype = {arXiv},
eprint = {2007.09469},
timestamp = {Tue, 28 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-09469.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-09471,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Anup Sood and
Dan E. Meyer and
Aritra Chowdhury and
Fiona Ginty},
title = {Automated Phenotyping via Cell Auto Training {(CAT)} on the Cell {DIVE}
Platform},
journal = {CoRR},
volume = {abs/2007.09471},
year = {2020},
url = {https://arxiv.org/abs/2007.09471},
eprinttype = {arXiv},
eprint = {2007.09471},
timestamp = {Wed, 29 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-09471.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-09860,
author = {Aritra Chowdhury and
Alberto Santamar{\'{\i}}a{-}Pang and
James R. Kubricht and
Peter H. Tu},
title = {Emergent symbolic language based deep medical image classification},
journal = {CoRR},
volume = {abs/2008.09860},
year = {2020},
url = {https://arxiv.org/abs/2008.09860},
eprinttype = {arXiv},
eprint = {2008.09860},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-09860.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-09866,
author = {Aritra Chowdhury and
Alberto Santamar{\'{\i}}a{-}Pang and
James R. Kubricht and
Jianwei Qiu and
Peter H. Tu},
title = {Symbolic Semantic Segmentation and Interpretation of {COVID-19} Lung
Infections in Chest {CT} volumes based on Emergent Languages},
journal = {CoRR},
volume = {abs/2008.09866},
year = {2020},
url = {https://arxiv.org/abs/2008.09866},
eprinttype = {arXiv},
eprint = {2008.09866},
timestamp = {Fri, 28 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-09866.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aivr/Santamaria-Pang19,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
James R. Kubricht and
Chinmaya Devaraj and
Aritra Chowdhury and
Peter H. Tu},
title = {Towards Semantic Action Analysis via Emergent Language},
booktitle = {2019 {IEEE} International Conference on Artificial Intelligence and
Virtual Reality, {AIVR} 2019, San Diego, CA, USA, December 9-11, 2019},
pages = {224--228},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/AIVR46125.2019.00047},
doi = {10.1109/AIVR46125.2019.00047},
timestamp = {Wed, 08 Jan 2020 14:51:10 +0100},
biburl = {https://dblp.org/rec/conf/aivr/Santamaria-Pang19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/avss/TuHGCFSK19,
author = {Peter H. Tu and
Donald Hamilton and
Tao Gao and
Alex Chen and
Justin Foehner and
Alberto Santamar{\'{\i}}a{-}Pang and
James Kubricht},
title = {A Learning Approach to Interactive Advertising},
booktitle = {16th {IEEE} International Conference on Advanced Video and Signal
Based Surveillance, {AVSS} 2019, Taipei, Taiwan, September 18-21,
2019},
pages = {1--8},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/AVSS.2019.8909885},
doi = {10.1109/AVSS.2019.8909885},
timestamp = {Thu, 05 Dec 2019 16:56:58 +0100},
biburl = {https://dblp.org/rec/conf/avss/TuHGCFSK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Santamaria-Pang19,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Anup Sood and
Dan E. Meyer and
Aritra Chowdhury and
Fiona Ginty},
editor = {Illhoi Yoo and
Jinbo Bi and
Xiaohua Hu},
title = {Automated Phenotyping via Cell Auto Training {(CAT)} on the Cell {DIVE}
Platform},
booktitle = {2019 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2019, San Diego, CA, USA, November 18-21, 2019},
pages = {2750--2756},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIBM47256.2019.8983271},
doi = {10.1109/BIBM47256.2019.8983271},
timestamp = {Fri, 09 Apr 2021 17:11:15 +0200},
biburl = {https://dblp.org/rec/conf/bibm/Santamaria-Pang19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/Santamaria-Pang17,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Raghav K. Padmanabhan and
Anup Sood and
Michael J. Gerdes and
Christopher Sevinsky and
Qing Li and
Nicole LaPlante and
Fiona Ginty},
title = {Robust single cell quantification of immune cell subtypes in histological
samples},
booktitle = {2017 {IEEE} {EMBS} International Conference on Biomedical {\&}
Health Informatics, {BHI} 2017, Orland, FL, USA, February 16-19, 2017},
pages = {121--124},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/BHI.2017.7897220},
doi = {10.1109/BHI.2017.7897220},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/bhi/Santamaria-Pang17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ChowdhuryDLMMMS17,
author = {Aritra Chowdhury and
Dmitry V. Dylov and
Qing Li and
Michael MacDonald and
Dan E. Meyer and
Michael Marino and
Alberto Santamar{\'{\i}}a{-}Pang},
title = {Blood vessel characterization using virtual 3D models and convolutional
neural networks in fluorescence microscopy},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {629--632},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950599},
doi = {10.1109/ISBI.2017.7950599},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ChowdhuryDLMMMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/ChowdhurySSY17,
author = {Aritra Chowdhury and
Christopher J. Sevinsky and
Alberto Santamar{\'{\i}}a{-}Pang and
B{\"{u}}lent Yener},
editor = {Metin N. Gurcan and
John E. Tomaszewski},
title = {A computational study on convolutional feature combination strategies
for grade classification in colon cancer using fluorescence microscopy
data},
booktitle = {Medical Imaging 2017: Digital Pathology, Orlando, Florida, United
States, 11-16 February 2017},
series = {{SPIE} Proceedings},
volume = {10140},
pages = {101400Q},
publisher = {{SPIE}},
year = {2017},
url = {https://doi.org/10.1117/12.2255687},
doi = {10.1117/12.2255687},
timestamp = {Wed, 16 May 2018 10:56:00 +0200},
biburl = {https://dblp.org/rec/conf/midp/ChowdhurySSY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/Al-KofahiSSGSL16,
author = {Yousef Al{-}Kofahi and
Christopher Sevinsky and
Alberto Santamar{\'{\i}}a{-}Pang and
Fiona Ginty and
Anup Sood and
Qing Li},
title = {Multi-channel algorithm for segmentation of tumor blood vessels using
multiplexed image data},
booktitle = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2016, Prague, Czech Republic, April 13-16, 2016},
pages = {213--216},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/ISBI.2016.7493247},
doi = {10.1109/ISBI.2016.7493247},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/isbi/Al-KofahiSSGSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/Santamaria-Pang15,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Paul Hernandez{-}Herrera and
Manos Papadakis and
Peter Saggau and
Ioannis A. Kakadiaris},
title = {Automatic Morphological Reconstruction of Neurons from Multiphoton
and Confocal Microscopy Images Using 3D Tubular Models},
journal = {Neuroinformatics},
volume = {13},
number = {3},
pages = {297--320},
year = {2015},
url = {https://doi.org/10.1007/s12021-014-9253-2},
doi = {10.1007/S12021-014-9253-2},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/Santamaria-Pang15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/Santamaria-Pang15,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Jens Rittscher and
Michael J. Gerdes and
Dirk Ryan Padfield},
title = {Cell segmentation and classification by hierarchical supervised shape
ranking},
booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2015, Brooklyn, NY, USA, April 16-19, 2015},
pages = {1296--1299},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ISBI.2015.7164112},
doi = {10.1109/ISBI.2015.7164112},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/Santamaria-Pang15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RittscherS14,
author = {Jens Rittscher and
Alberto Santamar{\'{\i}}a{-}Pang},
title = {Mapping for tissue based cytometry},
booktitle = {{IEEE} 11th International Symposium on Biomedical Imaging, {ISBI}
2014, April 29 - May 2, 2014, Beijing, Chin, Beijing, China},
pages = {278--281},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/ISBI.2014.6867863},
doi = {10.1109/ISBI.2014.6867863},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/RittscherS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/GerdesSSABBCCDF13,
author = {Michael J. Gerdes and
Christopher J. Sevinsky and
Anup Sood and
Sudeshna Adak and
Musodiq O. Bello and
Alexander Bordwell and
Ali Can and
Alex Corwin and
Sean Dinn and
Robert Filkins and
Denise Hollman and
Vidya Kamath and
Sireesha Kaanumalle and
Kevin B. Kenny and
Melinda Larsen and
Michael Lazare and
Qing Li and
Christina Lowes and
Colin C. McCulloch and
Elizabeth McDonough and
Michael Montalto and
Zhengyu Pang and
Jens Rittscher and
Alberto Santamar{\'{\i}}a{-}Pang and
Brion D. Sarachan and
Maximilian L. Seel and
Antti Seppo and
Kashan Shaikh and
Yunxia Sui and
Jingyu Zhang and
Fiona Ginty},
title = {Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded
cancer tissue},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {110},
number = {29},
pages = {11982--11987},
year = {2013},
url = {https://doi.org/10.1073/pnas.1300136110},
doi = {10.1073/PNAS.1300136110},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pnas/GerdesSSABBCCDF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/Santamaria-PangHR13,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Yuchi Huang and
Jens Rittscher},
title = {Cell segmentation and classification via unsupervised shape ranking},
booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings},
pages = {406--409},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/ISBI.2013.6556498},
doi = {10.1109/ISBI.2013.6556498},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/Santamaria-PangHR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MargolisSR12,
author = {Daniel Margolis and
Alberto Santamar{\'{\i}}a{-}Pang and
Jens Rittscher},
title = {Tissue segmentation and classification using graph-based unsupervised
clustering},
booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
pages = {162--165},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISBI.2012.6235509},
doi = {10.1109/ISBI.2012.6235509},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/MargolisSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/KakadiarisSP10,
author = {Ioannis A. Kakadiaris and
Alberto Santamar{\'{\i}}a{-}Pang and
Amol Pednekar},
title = {Functional Morphology Analysis of the Left Anterior Descending Coronary
Artery in {EBCT} Images},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {57},
number = {8},
pages = {1886--1896},
year = {2010},
url = {https://doi.org/10.1109/TBME.2010.2043254},
doi = {10.1109/TBME.2010.2043254},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/KakadiarisSP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/Santamaria-Pang10,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Sandeep Dutta and
Sokratis Makrogiannis and
Amy K. Hara and
William Pavlicek and
Alvin C. Silva and
Brian Thomsen and
Scott Robertson and
Darin Okerlund and
David A. Langan and
Rahul Bhotika},
editor = {Nico Karssemeijer and
Ronald M. Summers},
title = {Automated liver lesion characterization using fast kVp switching dual
energy computed tomography imaging},
booktitle = {Medical Imaging 2010: Computer-Aided Diagnosis, San Diego, California,
United States, 13-18 February 2010},
series = {{SPIE} Proceedings},
volume = {7624},
pages = {76240V},
publisher = {{SPIE}},
year = {2010},
url = {https://doi.org/10.1117/12.844059},
doi = {10.1117/12.844059},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/micad/Santamaria-Pang10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/Santamaria-PangBSK08,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Teodor Stefan Bildea and
Tan Shan and
Ioannis A. Kakadiaris},
title = {Denoising for 3-D Photon-Limited Imaging Data Using Nonseparable Filterbanks},
journal = {{IEEE} Trans. Image Process.},
volume = {17},
number = {12},
pages = {2312--2323},
year = {2008},
url = {https://doi.org/10.1109/TIP.2008.2003393},
doi = {10.1109/TIP.2008.2003393},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/Santamaria-PangBSK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Santamaria-PangCSK07,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Costa M. Colbert and
Peter Saggau and
Ioannis A. Kakadiaris},
editor = {Nicholas Ayache and
S{\'{e}}bastien Ourselin and
Anthony J. Maeder},
title = {Automatic Centerline Extraction of Irregular Tubular Structures Using
Probability Volumes from Multiphoton Imaging},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2007, 10th International Conference, Brisbane, Australia, October
29 - November 2, 2007, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {4792},
pages = {486--494},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75759-7\_59},
doi = {10.1007/978-3-540-75759-7\_59},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/Santamaria-PangCSK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/UrbanOWSSCK06,
author = {S. Urban and
Sean M. O'Malley and
B. Walsh and
Alberto Santamar{\'{\i}}a{-}Pang and
Peter Saggau and
Costa M. Colbert and
Ioannis A. Kakadiaris},
editor = {Reinhard Beichel and
Milan Sonka},
title = {Automatic Reconstruction of Dendrite Morphology from Optical Section
Stacks},
booktitle = {Computer Vision Approaches to Medical Image Analysis, Second International
{ECCV} Workshop, {CVAMIA} 2006, Graz, Austria, May 12, 2006 Revised
Papers},
series = {Lecture Notes in Computer Science},
volume = {4241},
pages = {190--201},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11889762\_17},
doi = {10.1007/11889762\_17},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccv/UrbanOWSSCK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/Santamaria-PangBKK06,
author = {Alberto Santamar{\'{\i}}a{-}Pang and
Teodor Stefan Bildea and
Ioannis Konstantinidis and
Ioannis A. Kakadiaris},
title = {Adaptive Frames-Based Denoising of Confocal Microscopy Data},
booktitle = {2006 {IEEE} International Conference on Acoustics Speech and Signal
Processing, {ICASSP} 2006, Toulouse, France, May 14-19, 2006},
pages = {85--88},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/ICASSP.2006.1660285},
doi = {10.1109/ICASSP.2006.1660285},
timestamp = {Mon, 22 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icassp/Santamaria-PangBKK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KakadiarisPS04,
author = {Ioannis A. Kakadiaris and
Amol Pednekar and
Alberto Santamar{\'{\i}}a{-}Pang},
editor = {Christian Barillot and
David R. Haynor and
Pierre Hellier},
title = {Three-Dimensional Shape-Motion Analysis of the Left Anterior Descending
Coronary Artery in {EBCT} Images},
booktitle = {Medical Image Computing and Computer-Assisted Intervention -- {MICCAI}
2004, 7th International Conference Saint-Malo, France, September 26-29,
2004, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3217},
pages = {1025--1033},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30136-3\_124},
doi = {10.1007/978-3-540-30136-3\_124},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KakadiarisPS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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