BibTeX records: Joanna Sarzynska

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@article{DBLP:journals/jcamd/DuttaDSL22,
  author       = {Nivedita Dutta and
                  Indrajit Deb and
                  Joanna Sarzynska and
                  Ansuman Lahiri},
  title        = {Data-informed reparameterization of modified {RNA} and the effect
                  of explicit water models: application to pseudouridine and derivatives},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {36},
  number       = {3},
  pages        = {205--224},
  year         = {2022},
  url          = {https://doi.org/10.1007/s10822-022-00447-4},
  doi          = {10.1007/S10822-022-00447-4},
  timestamp    = {Wed, 27 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/DuttaDSL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/LuwanskiHPZSMSA22,
  author       = {Kamil Luwanski and
                  Vladyslav Hlushchenko and
                  Mariusz Popenda and
                  Tomasz Zok and
                  Joanna Sarzynska and
                  Daniil Martsich and
                  Marta Szachniuk and
                  Maciej Antczak},
  title        = {RNAspider: a webserver to analyze entanglements in {RNA} 3D structures},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {663--669},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac218},
  doi          = {10.1093/NAR/GKAC218},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/LuwanskiHPZSMSA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/MiskiewiczSS21,
  author       = {Joanna Miskiewicz and
                  Joanna Sarzynska and
                  Marta Szachniuk},
  title        = {How bioinformatics resources work with {G4} RNAs},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {3},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbaa201},
  doi          = {10.1093/BIB/BBAA201},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MiskiewiczSS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/PopendaMSZS20,
  author       = {Mariusz Popenda and
                  Joanna Miskiewicz and
                  Joanna Sarzynska and
                  Tomasz Zok and
                  Marta Szachniuk},
  title        = {Topology-based classification of tetrads and quadruplex structures},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {4},
  pages        = {1129--1134},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btz738},
  doi          = {10.1093/BIOINFORMATICS/BTZ738},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PopendaMSZS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/DuttaSL20,
  author       = {Nivedita Dutta and
                  Joanna Sarzynska and
                  Ansuman Lahiri},
  title        = {Molecular Dynamics Simulation of the Conformational Preferences of
                  Pseudouridine Derivatives: Improving the Distribution in the Glycosidic
                  Torsion Space},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {10},
  pages        = {4995--5002},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.0c00369},
  doi          = {10.1021/ACS.JCIM.0C00369},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/DuttaSL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/MickiewiczSMKRL17,
  author       = {Agnieszka Mickiewicz and
                  Joanna Sarzynska and
                  Maciej Milostan and
                  Anna Kurzynska{-}Kokorniak and
                  Agnieszka Rybarczyk and
                  Piotr Lukasiak and
                  Tadeusz Kulinski and
                  Marek Figlerowicz and
                  Jacek Blazewicz},
  title        = {Modeling of the catalytic core of Arabidopsis thaliana Dicer-like
                  4 protein and its complex with double-stranded {RNA}},
  journal      = {Comput. Biol. Chem.},
  volume       = {66},
  pages        = {44--56},
  year         = {2017},
  url          = {https://doi.org/10.1016/j.compbiolchem.2016.11.003},
  doi          = {10.1016/J.COMPBIOLCHEM.2016.11.003},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/MickiewiczSMKRL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcc/DebPSL16,
  author       = {Indrajit Deb and
                  Rupak Pal and
                  Joanna Sarzynska and
                  Ansuman Lahiri},
  title        = {Reparameterizations of the \emph{{\(\chi\)}} Torsion and Lennard-Jones
                  \emph{{\(\sigma\)}} Parameters Improve the Conformational Characteristics
                  of Modified Uridines},
  journal      = {J. Comput. Chem.},
  volume       = {37},
  number       = {17},
  pages        = {1576--1588},
  year         = {2016},
  url          = {https://doi.org/10.1002/jcc.24374},
  doi          = {10.1002/JCC.24374},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcc/DebPSL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/DebSNL14,
  author       = {Indrajit Deb and
                  Joanna Sarzynska and
                  Lennart Nilsson and
                  Ansuman Lahiri},
  title        = {Conformational Preferences of Modified Uridines: Comparison of {AMBER}
                  Derived Force Fields},
  journal      = {J. Chem. Inf. Model.},
  volume       = {54},
  number       = {4},
  pages        = {1129--1142},
  year         = {2014},
  url          = {https://doi.org/10.1021/ci400582a},
  doi          = {10.1021/CI400582A},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/DebSNL14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}