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ORCIDBibTeX records: Nigam H. Shah
@article{DBLP:journals/midm/GuoMASFPFLJSS24,
author = {Lin Lawrence Guo and
Keith E. Morse and
Catherine Aftandilian and
Ethan Steinberg and
Jason Alan Fries and
Jos{\'{e}} D. Posada and
Scott Lanyon Fleming and
Joshua Lemmon and
Karim Jessa and
Nigam Shah and
Lillian Sung},
title = {Characterizing the limitations of using diagnosis codes in the context
of machine learning for healthcare},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {24},
number = {1},
pages = {51},
year = {2024},
url = {https://doi.org/10.1186/s12911-024-02449-8},
doi = {10.1186/S12911-024-02449-8},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/GuoMASFPFLJSS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/FlemingLHJRTBGS24,
author = {Scott L. Fleming and
Alejandro Lozano and
William J. Haberkorn and
Jenelle A. Jindal and
Eduardo Pontes Reis and
Rahul Thapa and
Louis Blankemeier and
Julian Z. Genkins and
Ethan Steinberg and
Ashwin Nayak and
Birju S. Patel and
Chia{-}Chun Chiang and
Alison Callahan and
Zepeng Huo and
Sergios Gatidis and
Scott J. Adams and
Oluseyi Fayanju and
Shreya J. Shah and
Thomas Savage and
Ethan Goh and
Akshay S. Chaudhari and
Nima Aghaeepour and
Christopher D. Sharp and
Michael A. Pfeffer and
Percy Liang and
Jonathan H. Chen and
Keith E. Morse and
Emma P. Brunskill and
Jason A. Fries and
Nigam H. Shah},
editor = {Michael J. Wooldridge and
Jennifer G. Dy and
Sriraam Natarajan},
title = {MedAlign: {A} Clinician-Generated Dataset for Instruction Following
with Electronic Medical Records},
booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI}
2024, Thirty-Sixth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver,
Canada},
pages = {22021--22030},
publisher = {{AAAI} Press},
year = {2024},
url = {https://doi.org/10.1609/aaai.v38i20.30205},
doi = {10.1609/AAAI.V38I20.30205},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/FlemingLHJRTBGS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-05125,
author = {Michael Wornow and
Alejandro Lozano and
Dev Dash and
Jenelle A. Jindal and
Kenneth W. Mahaffey and
Nigam H. Shah},
title = {Zero-Shot Clinical Trial Patient Matching with LLMs},
journal = {CoRR},
volume = {abs/2402.05125},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.05125},
doi = {10.48550/ARXIV.2402.05125},
eprinttype = {arXiv},
eprint = {2402.05125},
timestamp = {Wed, 14 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-05125.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-07911,
author = {Alison Callahan and
Duncan C. McElfresh and
Juan M. Banda and
Gabrielle Bunney and
Danton Char and
Jonathan H. Chen and
Conor K. Corbin and
Debadutta Dash and
Norman L. Downing and
Sneha S. Jain and
Nikesh Kotecha and
Jonathan Masterson and
Michelle M. Mello and
Keith E. Morse and
Srikar Nallan and
Abby Pandya and
Anurang Revri and
Aditya Sharma and
Christopher D. Sharp and
Rahul Thapa and
Michael Wornow and
Alaa Youssef and
Michael A. Pfeffer and
Nigam H. Shah},
title = {Standing on {FURM} ground - {A} framework for evaluating Fair, Useful,
and Reliable {AI} Models in healthcare systems},
journal = {CoRR},
volume = {abs/2403.07911},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.07911},
doi = {10.48550/ARXIV.2403.07911},
eprinttype = {arXiv},
eprint = {2403.07911},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-07911.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SinghSV23,
author = {Karandeep Singh and
Nigam H. Shah and
Andrew J. Vickers},
title = {Assessing the net benefit of machine learning models in the presence
of resource constraints},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {4},
pages = {668--673},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad006},
doi = {10.1093/JAMIA/OCAD006},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SinghSV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/CaglieroDSFC23,
author = {Diana Cagliero and
Natalie Deuitch and
Nigam Shah and
Chris Feudtner and
Danton Char},
title = {A framework to identify ethical concerns with ML-guided care workflows:
a case study of mortality prediction to guide advance care planning},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {5},
pages = {819--827},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad022},
doi = {10.1093/JAMIA/OCAD022},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/CaglieroDSFC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuFSS23,
author = {Yizhe Xu and
Agata Foryciarz and
Ethan Steinberg and
Nigam H. Shah},
title = {Clinical utility gains from incorporating comorbidity and geographic
location information into risk estimation equations for atherosclerotic
cardiovascular disease},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {5},
pages = {878--887},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad017},
doi = {10.1093/JAMIA/OCAD017},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/XuFSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/CorbinMAMPTKSC23,
author = {Conor K. Corbin and
Rob Maclay and
Aakash Acharya and
Sreedevi Mony and
Soumya Punnathanam and
Rahul Thapa and
Nikesh Kotecha and
Nigam H. Shah and
Jonathan H. Chen},
title = {{DEPLOYR:} a technical framework for deploying custom real-time machine
learning models into the electronic medical record},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {9},
pages = {1532--1542},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad114},
doi = {10.1093/JAMIA/OCAD114},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/CorbinMAMPTKSC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LemmonGSMFAPPSFS23,
author = {Joshua Lemmon and
Lin Lawrence Guo and
Ethan Steinberg and
Keith E. Morse and
Scott Lanyon Fleming and
Catherine Aftandilian and
Stephen R. Pfohl and
Jos{\'{e}} D. Posada and
Nigam Shah and
Jason Alan Fries and
Lillian Sung},
title = {Self-supervised machine learning using adult inpatient data produces
effective models for pediatric clinical prediction tasks},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {12},
pages = {2004--2011},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad175},
doi = {10.1093/JAMIA/OCAD175},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LemmonGSMFAPPSFS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WornowRCS23,
author = {Michael Wornow and
Elsie Gyang Ross and
Alison Callahan and
Nigam H. Shah},
title = {{APLUS:} {A} Python library for usefulness simulations of machine
learning models in healthcare},
journal = {J. Biomed. Informatics},
volume = {139},
pages = {104319},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104319},
doi = {10.1016/J.JBI.2023.104319},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WornowRCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/XuBCS23,
author = {Yizhe Xu and
Katelyn K. Bechler and
Alison Callahan and
Nigam Shah},
title = {Principled estimation and evaluation of treatment effect heterogeneity:
{A} case study application to dabigatran for patients with atrial
fibrillation},
journal = {J. Biomed. Informatics},
volume = {143},
pages = {104420},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104420},
doi = {10.1016/J.JBI.2023.104420},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/XuBCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/WornowXTPSFPFS23,
author = {Michael Wornow and
Yizhe Xu and
Rahul Thapa and
Birju S. Patel and
Ethan Steinberg and
Scott L. Fleming and
Michael A. Pfeffer and
Jason Alan Fries and
Nigam H. Shah},
title = {The shaky foundations of large language models and foundation models
for electronic health records},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00879-8},
doi = {10.1038/S41746-023-00879-8},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/WornowXTPSFPFS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/BlankemeierFTPS23,
author = {Louis Blankemeier and
Jason A. Fries and
Robert Tinn and
Joseph Preston and
Nigam Shah and
Akshay Chaudhari},
editor = {Anna Rogers and
Jordan L. Boyd{-}Graber and
Naoaki Okazaki},
title = {Efficient Diagnosis Assignment Using Unstructured Clinical Notes},
booktitle = {Proceedings of the 61st Annual Meeting of the Association for Computational
Linguistics (Volume 2: Short Papers), {ACL} 2023, Toronto, Canada,
July 9-14, 2023},
pages = {485--494},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.acl-short.42},
doi = {10.18653/V1/2023.ACL-SHORT.42},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/BlankemeierFTPS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/HuangHSCLLYSF23,
author = {Shih{-}Cheng Huang and
Zepeng Huo and
Ethan Steinberg and
Chia{-}Chun Chiang and
Curtis P. Langlotz and
Matthew P. Lungren and
Serena Yeung and
Nigam Shah and
Jason Alan Fries},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {{INSPECT:} {A} Multimodal Dataset for Patient Outcome Prediction of
Pulmonary Embolisms},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/39736af1b9d87a1fddad9f84a6bcf64c-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/HuangHSCLLYSF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WornowTSFS23,
author = {Michael Wornow and
Rahul Thapa and
Ethan Steinberg and
Jason A. Fries and
Nigam Shah},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {{EHRSHOT:} An {EHR} Benchmark for Few-Shot Evaluation of Foundation
Models},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/d42db1f74df54cb992b3956eb7f15a6f-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/WornowTSFS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-03150,
author = {Ethan Steinberg and
Yizhe Xu and
Jason A. Fries and
Nigam Shah},
title = {Self-Supervised Time-to-Event Modeling with Structured Medical Records},
journal = {CoRR},
volume = {abs/2301.03150},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.03150},
doi = {10.48550/ARXIV.2301.03150},
eprinttype = {arXiv},
eprint = {2301.03150},
timestamp = {Tue, 10 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-03150.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-06269,
author = {Conor K. Corbin and
Rob Maclay and
Aakash Acharya and
Sreedevi Mony and
Soumya Punnathanam and
Rahul Thapa and
Nikesh Kotecha and
Nigam H. Shah and
Jonathan H. Chen},
title = {{DEPLOYR:} {A} technical framework for deploying custom real-time
machine learning models into the electronic medical record},
journal = {CoRR},
volume = {abs/2303.06269},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.06269},
doi = {10.48550/ARXIV.2303.06269},
eprinttype = {arXiv},
eprint = {2303.06269},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-06269.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-12961,
author = {Michael Wornow and
Yizhe Xu and
Rahul Thapa and
Birju S. Patel and
Ethan Steinberg and
Scott L. Fleming and
Michael A. Pfeffer and
Jason A. Fries and
Nigam H. Shah},
title = {The Shaky Foundations of Clinical Foundation Models: {A} Survey of
Large Language Models and Foundation Models for EMRs},
journal = {CoRR},
volume = {abs/2303.12961},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.12961},
doi = {10.48550/ARXIV.2303.12961},
eprinttype = {arXiv},
eprint = {2303.12961},
timestamp = {Thu, 13 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-12961.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-13714,
author = {Debadutta Dash and
Rahul Thapa and
Juan M. Banda and
Akshay Swaminathan and
Morgan Cheatham and
Mehr Kashyap and
Nikesh Kotecha and
Jonathan H. Chen and
Saurabh Gombar and
Lance Downing and
Rachel Pedreira and
Ethan Goh and
Angel Arnaout and
Garret Kenn Morris and
Honor Magon and
Matthew P. Lungren and
Eric Horvitz and
Nigam H. Shah},
title = {Evaluation of {GPT-3.5} and {GPT-4} for supporting real-world information
needs in healthcare delivery},
journal = {CoRR},
volume = {abs/2304.13714},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.13714},
doi = {10.48550/ARXIV.2304.13714},
eprinttype = {arXiv},
eprint = {2304.13714},
timestamp = {Wed, 03 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-13714.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-03219,
author = {Alexey Youssef and
Michael Pencina and
Anshul Thakur and
Tingting Zhu and
David A. Clifton and
Nigam H. Shah},
title = {All models are local: time to replace external validation with recurrent
local validation},
journal = {CoRR},
volume = {abs/2305.03219},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.03219},
doi = {10.48550/ARXIV.2305.03219},
eprinttype = {arXiv},
eprint = {2305.03219},
timestamp = {Wed, 10 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-03219.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-02028,
author = {Michael Wornow and
Rahul Thapa and
Ethan Steinberg and
Jason A. Fries and
Nigam Shah},
title = {{EHRSHOT:} An {EHR} Benchmark for Few-Shot Evaluation of Foundation
Models},
journal = {CoRR},
volume = {abs/2307.02028},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.02028},
doi = {10.48550/ARXIV.2307.02028},
eprinttype = {arXiv},
eprint = {2307.02028},
timestamp = {Mon, 10 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-02028.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-14089,
author = {Scott L. Fleming and
Alejandro Lozano and
William J. Haberkorn and
Jenelle A. Jindal and
Eduardo Pontes Reis and
Rahul Thapa and
Louis Blankemeier and
Julian Z. Genkins and
Ethan Steinberg and
Ashwin Nayak and
Birju S. Patel and
Chia{-}Chun Chiang and
Alison Callahan and
Zepeng Huo and
Sergios Gatidis and
Scott J. Adams and
Oluseyi Fayanju and
Shreya J. Shah and
Thomas Savage and
Ethan Goh and
Akshay S. Chaudhari and
Nima Aghaeepour and
Christopher D. Sharp and
Michael A. Pfeffer and
Percy Liang and
Jonathan H. Chen and
Keith E. Morse and
Emma P. Brunskill and
Jason A. Fries and
Nigam H. Shah},
title = {MedAlign: {A} Clinician-Generated Dataset for Instruction Following
with Electronic Medical Records},
journal = {CoRR},
volume = {abs/2308.14089},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.14089},
doi = {10.48550/ARXIV.2308.14089},
eprinttype = {arXiv},
eprint = {2308.14089},
timestamp = {Mon, 18 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-14089.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-16146,
author = {Alejandro Lozano and
Scott L. Fleming and
Chia{-}Chun Chiang and
Nigam Shah},
title = {Clinfo.ai: An Open-Source Retrieval-Augmented Large Language Model
System for Answering Medical Questions using Scientific Literature},
journal = {CoRR},
volume = {abs/2310.16146},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.16146},
doi = {10.48550/ARXIV.2310.16146},
eprinttype = {arXiv},
eprint = {2310.16146},
timestamp = {Tue, 31 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-16146.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-10798,
author = {Shih{-}Cheng Huang and
Zepeng Huo and
Ethan Steinberg and
Chia{-}Chun Chiang and
Matthew P. Lungren and
Curtis P. Langlotz and
Serena Yeung and
Nigam H. Shah and
Jason A. Fries},
title = {{INSPECT:} {A} Multimodal Dataset for Pulmonary Embolism Diagnosis
and Prognosis},
journal = {CoRR},
volume = {abs/2311.10798},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.10798},
doi = {10.48550/ARXIV.2311.10798},
eprinttype = {arXiv},
eprint = {2311.10798},
timestamp = {Wed, 22 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-10798.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-11483,
author = {Lin Lawrence Guo and
Jason A. Fries and
Ethan Steinberg and
Scott Lanyon Fleming and
Keith E. Morse and
Catherine Aftandilian and
Jos{\'{e}} D. Posada and
Nigam Shah and
Lillian Sung},
title = {A Multi-Center Study on the Adaptability of a Shared Foundation Model
for Electronic Health Records},
journal = {CoRR},
volume = {abs/2311.11483},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.11483},
doi = {10.48550/ARXIV.2311.11483},
eprinttype = {arXiv},
eprint = {2311.11483},
timestamp = {Thu, 23 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-11483.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/LuSWKCFFELSRGCPLSPDSHSXGLPTS22,
author = {Jonathan Lu and
Amelia Sattler and
Samantha Wang and
Ali Raza Khaki and
Alison Callahan and
Scott L. Fleming and
Rebecca Fong and
Benjamin Ehlert and
Ron C. Li and
Lisa Shieh and
Kavitha Ramchandran and
Michael Gensheimer and
Sarah Chobot and
Stephen Pfohl and
Siyun Li and
Kenny Shum and
Nitin Parikh and
Priya Desai and
Briththa Seevaratnam and
Melanie Hanson and
Margaret Smith and
Yizhe Xu and
Arjun Gokhale and
Steven Lin and
Michael A. Pfeffer and
Winifred Teuteberg and
Nigam H. Shah},
title = {Considerations in the reliability and fairness audits of predictive
models for advance care planning},
journal = {Frontiers Digit. Health},
volume = {4},
year = {2022},
url = {https://doi.org/10.3389/fdgth.2022.943768},
doi = {10.3389/FDGTH.2022.943768},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fdgth/LuSWKCFFELSRGCPLSPDSHSXGLPTS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BechlerS22,
author = {Katelyn K. Bechler and
Nigam Shah},
title = {Predicting patients who are likely to develop Lupus Nephritis of those
newly diagnosed with Systemic Lupus Erythematosus},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/1013-1.4642486/411-1.4642483},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/BechlerS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fat/PfohlXFIGS22,
author = {Stephen Pfohl and
Yizhe Xu and
Agata Foryciarz and
Nikolaos Ignatiadis and
Julian Genkins and
Nigam Shah},
title = {Net benefit, calibration, threshold selection, and training objectives
for algorithmic fairness in healthcare},
booktitle = {FAccT '22: 2022 {ACM} Conference on Fairness, Accountability, and
Transparency, Seoul, Republic of Korea, June 21 - 24, 2022},
pages = {1039--1052},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3531146.3533166},
doi = {10.1145/3531146.3533166},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fat/PfohlXFIGS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ml4h/MartinezYSLTKSD22,
author = {Daniel Lopez Martinez and
Alex Yakubovich and
Martin Seneviratne and
{\'{A}}d{\'{a}}m D. Lelkes and
Akshit Tyagi and
Jonas Kemp and
Ethan Steinberg and
N. Lance Downing and
Ron C. Li and
Keith E. Morse and
Nigam H. Shah and
Ming{-}Jun Chen},
editor = {Antonio Parziale and
Monica Agrawal and
Shalmali Joshi and
Irene Y. Chen and
Shengpu Tang and
Luis Oala and
Adarsh Subbaswamy},
title = {Instability in clinical risk stratification models using deep learning},
booktitle = {Machine Learning for Health, {ML4H} 2022, 28 November 2022, New Orleans,
Lousiana, {USA} {\&} Virtual},
series = {Proceedings of Machine Learning Research},
volume = {193},
pages = {552--565},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v193/lopez-martinez22a.html},
timestamp = {Fri, 17 Feb 2023 16:29:10 +0100},
biburl = {https://dblp.org/rec/conf/ml4h/MartinezYSLTKSD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-01906,
author = {Stephen R. Pfohl and
Yizhe Xu and
Agata Foryciarz and
Nikolaos Ignatiadis and
Julian Genkins and
Nigam H. Shah},
title = {Net benefit, calibration, threshold selection, and training objectives
for algorithmic fairness in healthcare},
journal = {CoRR},
volume = {abs/2202.01906},
year = {2022},
url = {https://arxiv.org/abs/2202.01906},
eprinttype = {arXiv},
eprint = {2202.01906},
timestamp = {Thu, 10 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-01906.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-10828,
author = {Daniel Lopez Martinez and
Alex Yakubovich and
Martin Seneviratne and
{\'{A}}d{\'{a}}m D. Lelkes and
Akshit Tyagi and
Jonas Kemp and
Ethan Steinberg and
N. Lance Downing and
Ron C. Li and
Keith E. Morse and
Nigam H. Shah and
Ming{-}Jun Chen},
title = {Instability in clinical risk stratification models using deep learning},
journal = {CoRR},
volume = {abs/2211.10828},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.10828},
doi = {10.48550/ARXIV.2211.10828},
eprinttype = {arXiv},
eprint = {2211.10828},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-10828.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/GuoPFPFASS21,
author = {Lin Lawrence Guo and
Stephen R. Pfohl and
Jason Alan Fries and
Jos{\'{e}} D. Posada and
Scott L. Fleming and
Catherine Aftandilian and
Nigam Shah and
Lillian Sung},
title = {Systematic Review of Approaches to Preserve Machine Learning Performance
in the Presence of Temporal Dataset Shift in Clinical Medicine},
journal = {Appl. Clin. Inform.},
volume = {12},
number = {4},
pages = {808--815},
year = {2021},
url = {https://doi.org/10.1055/s-0041-1735184},
doi = {10.1055/S-0041-1735184},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aci/GuoPFPFASS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/GensheimerABCHW21,
author = {Michael Francis Gensheimer and
Sonya Aggarwal and
Kathryn R. K. Benson and
Justin N. Carter and
Solomon Henry and
Douglas J. Wood and
Scott G. Soltys and
Steven Hancock and
Erqi Pollom and
Nigam H. Shah and
Daniel T. Chang},
title = {Automated model versus treating physician for predicting survival
time of patients with metastatic cancer},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {6},
pages = {1108--1116},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa290},
doi = {10.1093/JAMIA/OCAA290},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/GensheimerABCHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JungKAHSLSSJVSB21,
author = {Kenneth Jung and
Sehj Kashyap and
Anand Avati and
Stephanie Harman and
Heather Shaw and
Ron C. Li and
Margaret Smith and
Kenny Shum and
Jacob Javitz and
Yohan Vetteth and
Tina Seto and
Steven C. Bagley and
Nigam H. Shah},
title = {A framework for making predictive models useful in practice},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {6},
pages = {1149--1158},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa318},
doi = {10.1093/JAMIA/OCAA318},
timestamp = {Wed, 23 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/JungKAHSLSSJVSB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Hernandez-Boussard21,
author = {Tina Hernandez{-}Boussard and
Matthew P. Lungren and
Nigam Shah},
title = {Conflicting information from the Food and Drug Administration: Missed
opportunity to lead standards for safe and effective medical artificial
intelligence solutions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {6},
pages = {1353--1355},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab035},
doi = {10.1093/JAMIA/OCAB035},
timestamp = {Fri, 22 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/Hernandez-Boussard21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/CallahanPPBGS21,
author = {Alison Callahan and
Vladimir Polony and
Jos{\'{e}} D. Posada and
Juan M. Banda and
Saurabh Gombar and
Nigam H. Shah},
title = {{ACE:} the Advanced Cohort Engine for searching longitudinal patient
records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {7},
pages = {1468--1479},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab027},
doi = {10.1093/JAMIA/OCAB027},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/CallahanPPBGS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Hernandez-Boussard21a,
author = {Tina Hernandez{-}Boussard and
Matthew P. Lungren and
Nigam Shah},
title = {Corrigendum: Conflicting information from the Food and Drug Administration:
Missed opportunity to lead standards for safe and effective medical
artificial intelligence solutions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {7},
pages = {1600},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab063},
doi = {10.1093/JAMIA/OCAB063},
timestamp = {Wed, 08 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/Hernandez-Boussard21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PatelSPS21,
author = {Birju S. Patel and
Ethan Steinberg and
Stephen R. Pfohl and
Nigam H. Shah},
title = {Learning decision thresholds for risk stratification models from aggregate
clinician behavior},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {10},
pages = {2258--2264},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab159},
doi = {10.1093/JAMIA/OCAB159},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/PatelSPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BaiSSKHSK21,
author = {Lawrence Bai and
Madeleine K. D. Scott and
Ethan Steinberg and
Laurynas Kalesinskas and
Aida Habtezion and
Nigam H. Shah and
Purvesh Khatri},
title = {Computational drug repositioning of atorvastatin for ulcerative colitis},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {11},
pages = {2325--2335},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab165},
doi = {10.1093/JAMIA/OCAB165},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/BaiSSKHSK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KashyapMPS21,
author = {Sehj Kashyap and
Keith E. Morse and
Birju S. Patel and
Nigam H. Shah},
title = {A survey of extant organizational and computational setups for deploying
predictive models in health systems},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {11},
pages = {2445--2450},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab154},
doi = {10.1093/JAMIA/OCAB154},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/KashyapMPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/PfohlFS21,
author = {Stephen R. Pfohl and
Agata Foryciarz and
Nigam H. Shah},
title = {An empirical characterization of fair machine learning for clinical
risk prediction},
journal = {J. Biomed. Informatics},
volume = {113},
pages = {103621},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103621},
doi = {10.1016/J.JBI.2020.103621},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/PfohlFS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SteinbergJFCPS21,
author = {Ethan Steinberg and
Kenneth Jung and
Jason A. Fries and
Conor K. Corbin and
Stephen R. Pfohl and
Nigam H. Shah},
title = {Language models are an effective representation learning technique
for electronic health record data},
journal = {J. Biomed. Informatics},
volume = {113},
pages = {103637},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103637},
doi = {10.1016/J.JBI.2020.103637},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SteinbergJFCPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KoCARANBS21,
author = {Michael Ko and
Emma Chen and
Ashwin Agrawal and
Pranav Rajpurkar and
Anand Avati and
Andrew Yan{-}Tak Ng and
Sanjay Basu and
Nigam H. Shah},
title = {Improving hospital readmission prediction using individualized utility
analysis},
journal = {J. Biomed. Informatics},
volume = {119},
pages = {103826},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103826},
doi = {10.1016/J.JBI.2021.103826},
timestamp = {Fri, 23 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/KoCARANBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/LaiCPKBSNDSGNCF21,
author = {Alvina Grace Lai and
Wai Hoong Chang and
Constantinos A. Parisinos and
Michail Katsoulis and
Ruth M. Blackburn and
Anoop D. Shah and
Vincent Nguyen and
Spiros C. Denaxas and
George Davey Smith and
Tom R. Gaunt and
Krishnarajah Nirantharakumar and
Murray P. Cox and
Donall Forde and
Folkert W. Asselbergs and
Steve K. Harris and
Sylvia Richardson and
Reecha Sofat and
Richard J. B. Dobson and
Aroon D. Hingorani and
Riyaz Patel and
Jonathan Sterne and
Amitava Banerjee and
Alastair K. Denniston and
Simon Ball and
Neil J. Sebire and
Nigam H. Shah and
Graham R. Foster and
Bryan Williams and
Harry Hemingway},
title = {An informatics consult approach for generating clinical evidence for
treatment decisions},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {21},
number = {1},
pages = {281},
year = {2021},
url = {https://doi.org/10.1186/s12911-021-01638-z},
doi = {10.1186/S12911-021-01638-Z},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/LaiCPKBSNDSGNCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pvldb/Shah21,
author = {Nigam Shah},
title = {Summarizing Patients Like Mine via an On-demand Consultation Service},
journal = {Proc. {VLDB} Endow.},
volume = {14},
number = {13},
pages = {3417},
year = {2021},
url = {http://www.vldb.org/pvldb/vol14/p3417-shah.pdf},
doi = {10.14778/3484224.3484242},
timestamp = {Thu, 21 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pvldb/Shah21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LuoWGDS21,
author = {Yuan Luo and
Fei Wang and
Benjamin S. Glicksberg and
Jessilyn Dunn and
Nigam Shah},
title = {Multi-Modal Data Science for Healthcare: State of the Art, Challenges,
and Opportunities},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t002-1.4626813/t002-1.4626814/3575770-1.4626920/3577358-1.4626917},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/LuoWGDS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-12250,
author = {Stephen R. Pfohl and
Haoran Zhang and
Yizhe Xu and
Agata Foryciarz and
Marzyeh Ghassemi and
Nigam H. Shah},
title = {A comparison of approaches to improve worst-case predictive model
performance over patient subpopulations},
journal = {CoRR},
volume = {abs/2108.12250},
year = {2021},
url = {https://arxiv.org/abs/2108.12250},
eprinttype = {arXiv},
eprint = {2108.12250},
timestamp = {Fri, 03 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-12250.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-11665,
author = {Yuyin Zhou and
Shih{-}Cheng Huang and
Jason Alan Fries and
Alaa Youssef and
Timothy J. Amrhein and
Marcello Chang and
Imon Banerjee and
Daniel L. Rubin and
Lei Xing and
Nigam Shah and
Matthew P. Lungren},
title = {RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary
Embolism Detection from {CT} and {EHR}},
journal = {CoRR},
volume = {abs/2111.11665},
year = {2021},
url = {https://arxiv.org/abs/2111.11665},
eprinttype = {arXiv},
eprint = {2111.11665},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-11665.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KashyapSBFRYHS20,
author = {Mehr Kashyap and
Martin G. Seneviratne and
Juan M. Banda and
Thomas Falconer and
Borim Ryu and
Sooyoung Yoo and
George Hripcsak and
Nigam H. Shah},
title = {Development and validation of phenotype classifiers across multiple
sites in the observational health data sciences and informatics network},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {6},
pages = {877--883},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa032},
doi = {10.1093/JAMIA/OCAA032},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KashyapSBFRYHS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KashyapGYCFPS20,
author = {Sehj Kashyap and
Saurabh Gombar and
Steve Yadlowsky and
Alison Callahan and
Jason A. Fries and
Benjamin A. Pinsky and
Nigam H. Shah},
title = {Measure what matters: Counts of hospitalized patients are a better
metric for health system capacity planning for a reopening},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {7},
pages = {1026--1131},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa076},
doi = {10.1093/JAMIA/OCAA076},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KashyapGYCFPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Hernandez-Boussard20,
author = {Tina Hernandez{-}Boussard and
Selen Bozkurt and
John P. A. Ioannidis and
Nigam H. Shah},
title = {{MINIMAR} (MINimum Information for Medical {AI} Reporting): Developing
reporting standards for artificial intelligence in health care},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {12},
pages = {2011--2015},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa088},
doi = {10.1093/JAMIA/OCAA088},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/Hernandez-Boussard20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengSH20,
author = {Chunhua Weng and
Nigam H. Shah and
George Hripcsak},
title = {Deep phenotyping: Embracing complexity and temporality - Towards scalability,
portability, and interoperability},
journal = {J. Biomed. Informatics},
volume = {105},
pages = {103433},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103433},
doi = {10.1016/J.JBI.2020.103433},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WengSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/CallahanSFGPCS20,
author = {Alison Callahan and
Ethan Steinberg and
Jason A. Fries and
Saurabh Gombar and
Birju S. Patel and
Conor K. Corbin and
Nigam H. Shah},
title = {Estimating the efficacy of symptom-based screening for {COVID-19}},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-0300-0},
doi = {10.1038/S41746-020-0300-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/CallahanSFGPCS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/LiAS20,
author = {Ron C. Li and
Steven M. Asch and
Nigam H. Shah},
title = {Developing a delivery science for artificial intelligence in healthcare},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-00318-y},
doi = {10.1038/S41746-020-00318-Y},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/LiAS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/MinerHFFWWMJAA020,
author = {Adam S. Miner and
Albert Haque and
Jason A. Fries and
Scott L. Fleming and
Denise E. Wilfley and
G. Terence Wilson and
Arnold Milstein and
Dan Jurafsky and
Bruce A. Arnow and
W. Stewart Agras and
Li Fei{-}Fei and
Nigam H. Shah},
title = {Assessing the accuracy of automatic speech recognition for psychotherapy},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-0285-8},
doi = {10.1038/S41746-020-0285-8},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/MinerHFFWWMJAA020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuserBNMWSPS20,
author = {Vojtech Huser and
Clair Blacketer and
Karthik Natarajan and
Robert T. Miller and
Andrew Williams and
Selva Muthu Kumaran Sathappan and
Jos{\'{e}} D. Posada and
Nigam Shah},
title = {Data Quality Assessment of Laboratory Data},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3417113-1.4605509/3413748-1.4605506},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuserBNMWSPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZuoLZZDDNHSBRX20,
author = {Xu Zuo and
Jianfu Li and
Bo Zhao and
Yujia Zhou and
Xiao Dong and
Jon D. Duke and
Karthik Natarajan and
George Hripcsak and
Nigam Shah and
Juan M. Banda and
Ruth M. Reeves and
Hua Xu},
title = {Normalizing Clinical Document Titles to {LOINC} Document Ontology:
an Initial Study},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3410444-1.4606209/3416722-1.4606206},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZuoLZZDDNHSBRX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-05295,
author = {Ethan Steinberg and
Kenneth Jung and
Jason A. Fries and
Conor K. Corbin and
Stephen R. Pfohl and
Nigam H. Shah},
title = {Language Models Are An Effective Patient Representation Learning Technique
For Electronic Health Record Data},
journal = {CoRR},
volume = {abs/2001.05295},
year = {2020},
url = {https://arxiv.org/abs/2001.05295},
eprinttype = {arXiv},
eprint = {2001.05295},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-05295.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-10534,
author = {Somalee Datta and
Jos{\'{e}} D. Posada and
Garrick Olson and
Wencheng Li and
Ciaran O'Reilly and
Deepa Balraj and
Joseph Mesterhazy and
Joseph Pallas and
Priyamvada Desai and
Nigam Shah},
title = {A new paradigm for accelerating clinical data science at Stanford
Medicine},
journal = {CoRR},
volume = {abs/2003.10534},
year = {2020},
url = {https://arxiv.org/abs/2003.10534},
eprinttype = {arXiv},
eprint = {2003.10534},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2003-10534.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-10306,
author = {Stephen R. Pfohl and
Agata Foryciarz and
Nigam H. Shah},
title = {An Empirical Characterization of Fair Machine Learning For Clinical
Risk Prediction},
journal = {CoRR},
volume = {abs/2007.10306},
year = {2020},
url = {https://arxiv.org/abs/2007.10306},
eprinttype = {arXiv},
eprint = {2007.10306},
timestamp = {Wed, 29 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-10306.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-01972,
author = {Jason A. Fries and
Ethan Steinberg and
Saelig Khattar and
Scott L. Fleming and
Jos{\'{e}} D. Posada and
Alison Callahan and
Nigam H. Shah},
title = {Trove: Ontology-driven weak supervision for medical entity classification},
journal = {CoRR},
volume = {abs/2008.01972},
year = {2020},
url = {https://arxiv.org/abs/2008.01972},
eprinttype = {arXiv},
eprint = {2008.01972},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-01972.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuBWS19,
author = {Vincent X. Liu and
David W. Bates and
Jenna Wiens and
Nigam H. Shah},
title = {The number needed to benefit: estimating the value of predictive analytics
in healthcare},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {12},
pages = {1655--1659},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocz088},
doi = {10.1093/JAMIA/OCZ088},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiuBWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/JungSKSS19,
author = {Kenneth Jung and
Sylvia E. K. Sudat and
Nicole Kwon and
Walter F. Stewart and
Nigam H. Shah},
title = {Predicting need for advanced illness or palliative care in a primary
care population using electronic health record data},
journal = {J. Biomed. Informatics},
volume = {92},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103115},
doi = {10.1016/J.JBI.2019.103115},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/JungSKSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/BandaSAPPIBWDJM19,
author = {Juan M. Banda and
Ashish Sarraju and
Fahim Abbasi and
Justin Parizo and
Mitchel Pariani and
Hannah Ison and
Elinor Briskin and
Hannah Wand and
S{\'{e}}bastien Dubois and
Kenneth Jung and
Seth A. Myers and
Daniel J. Rader and
Joseph B. Leader and
Michael F. Murray and
Kelly D. Myers and
Katherine Wilemon and
Nigam H. Shah and
Joshua W. Knowles},
title = {Finding missed cases of familial hypercholesterolemia in health systems
using machine learning},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0101-5},
doi = {10.1038/S41746-019-0101-5},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/BandaSAPPIBWDJM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/CallahanFRHGDS19,
author = {Alison Callahan and
Jason A. Fries and
Christopher R{\'{e}} and
James I Huddleston III and
Nicholas J. Giori and
Scott L. Delp and
Nigam H. Shah},
title = {Medical device surveillance with electronic health records},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0168-z},
doi = {10.1038/S41746-019-0168-Z},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/CallahanFRHGDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/GombarCCHS19,
author = {Saurabh Gombar and
Alison Callahan and
Robert M. Califf and
Robert A. Harrington and
Nigam H. Shah},
title = {It is time to learn from patients like mine},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0091-3},
doi = {10.1038/S41746-019-0091-3},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/GombarCCHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aies/PfohlMCRPS19,
author = {Stephen Pfohl and
Ben J. Marafino and
Adrien Coulet and
F{\'{a}}tima Rodriguez and
Latha Palaniappan and
Nigam H. Shah},
editor = {Vincent Conitzer and
Gillian K. Hadfield and
Shannon Vallor},
title = {Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk},
booktitle = {Proceedings of the 2019 {AAAI/ACM} Conference on AI, Ethics, and Society,
{AIES} 2019, Honolulu, HI, USA, January 27-28, 2019},
pages = {271--278},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3306618.3314278},
doi = {10.1145/3306618.3314278},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aies/PfohlMCRPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlhc/PfohlDDS19,
author = {Stephen R. Pfohl and
Tony Duan and
Daisy Yi Ding and
Nigam H. Shah},
editor = {Finale Doshi{-}Velez and
Jim Fackler and
Ken Jung and
David C. Kale and
Rajesh Ranganath and
Byron C. Wallace and
Jenna Wiens},
title = {Counterfactual Reasoning for Fair Clinical Risk Prediction},
booktitle = {Proceedings of the Machine Learning for Healthcare Conference, {MLHC}
2019, 9-10 August 2019, Ann Arbor, Michigan, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {106},
pages = {325--358},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v106/pfohl19a.html},
timestamp = {Fri, 27 Nov 2020 15:17:46 +0100},
biburl = {https://dblp.org/rec/conf/mlhc/PfohlDDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DingSPKJS19,
author = {Daisy Yi Ding and
Chlo{\'{e}} Simpson and
Stephen Pfohl and
Dave C. Kale and
Kenneth Jung and
Nigam H. Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {The Effectiveness of Multitask Learning for Phenotyping with Electronic
Health Records Data},
booktitle = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2019},
pages = {18--29},
year = {2019},
url = {http://psb.stanford.edu/psb-online/proceedings/psb19/ding.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/DingSPKJS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/AvatiDZJSN19,
author = {Anand Avati and
Tony Duan and
Sharon Zhou and
Kenneth Jung and
Nigam H. Shah and
Andrew Y. Ng},
editor = {Amir Globerson and
Ricardo Silva},
title = {Countdown Regression: Sharp and Calibrated Survival Predictions},
booktitle = {Proceedings of the Thirty-Fifth Conference on Uncertainty in Artificial
Intelligence, {UAI} 2019, Tel Aviv, Israel, July 22-25, 2019},
series = {Proceedings of Machine Learning Research},
volume = {115},
pages = {145--155},
publisher = {{AUAI} Press},
year = {2019},
url = {http://proceedings.mlr.press/v115/avati20a.html},
timestamp = {Tue, 15 Dec 2020 17:40:18 +0100},
biburl = {https://dblp.org/rec/conf/uai/AvatiDZJSN19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-05958,
author = {Albee Y. Ling and
Allison W. Kurian and
Jennifer L. Caswell{-}Jin and
George W. Sledge Jr. and
Nigam H. Shah and
Suzanne R. Tamang},
title = {A Semi-Supervised Machine Learning Approach to Detecting Recurrent
Metastatic Breast Cancer Cases Using Linked Cancer Registry and Electronic
Medical Record Data},
journal = {CoRR},
volume = {abs/1901.05958},
year = {2019},
url = {http://arxiv.org/abs/1901.05958},
eprinttype = {arXiv},
eprint = {1901.05958},
timestamp = {Sun, 03 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-05958.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-07640,
author = {Alison Callahan and
Jason A. Fries and
Christopher R{\'{e}} and
James I Huddleston III and
Nicholas J. Giori and
Scott L. Delp and
Nigam H. Shah},
title = {Medical device surveillance with electronic health records},
journal = {CoRR},
volume = {abs/1904.07640},
year = {2019},
url = {http://arxiv.org/abs/1904.07640},
eprinttype = {arXiv},
eprint = {1904.07640},
timestamp = {Fri, 26 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-07640.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-06260,
author = {Stephen Pfohl and
Tony Duan and
Daisy Yi Ding and
Nigam H. Shah},
title = {Counterfactual Reasoning for Fair Clinical Risk Prediction},
journal = {CoRR},
volume = {abs/1907.06260},
year = {2019},
url = {http://arxiv.org/abs/1907.06260},
eprinttype = {arXiv},
eprint = {1907.06260},
timestamp = {Wed, 17 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-06260.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1911-07084,
author = {Scott L. Fleming and
Kuhan Jeyapragasan and
Tony Duan and
Daisy Yi Ding and
Saurabh Gombar and
Nigam Shah and
Emma Brunskill},
title = {Missingness as Stability: Understanding the Structure of Missingness
in Longitudinal {EHR} data and its Impact on Reinforcement Learning
in Healthcare},
journal = {CoRR},
volume = {abs/1911.07084},
year = {2019},
url = {http://arxiv.org/abs/1911.07084},
eprinttype = {arXiv},
eprint = {1911.07084},
timestamp = {Mon, 02 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1911-07084.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-08041,
author = {Anitha Kannan and
Jason Alan Fries and
Eric Kramer and
Jen Jen Chen and
Nigam Shah and
Xavier Amatriain},
title = {The accuracy vs. coverage trade-off in patient-facing diagnosis models},
journal = {CoRR},
volume = {abs/1912.08041},
year = {2019},
url = {http://arxiv.org/abs/1912.08041},
eprinttype = {arXiv},
eprint = {1912.08041},
timestamp = {Fri, 03 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-08041.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangHBSSGBC18,
author = {Jason K. Wang and
Jason Hom and
Santhosh Balasubramanian and
Alejandro Schuler and
Nigam H. Shah and
Mary K. Goldstein and
Michael T. M. Baiocchi and
Jonathan H. Chen},
title = {An evaluation of clinical order patterns machine-learned from clinician
cohorts stratified by patient mortality outcomes},
journal = {J. Biomed. Informatics},
volume = {86},
pages = {109--119},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.09.005},
doi = {10.1016/J.JBI.2018.09.005},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WangHBSSGBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengSH18,
author = {Chunhua Weng and
Nigam Shah and
George Hripcsak},
title = {Call for papers: Deep phenotyping for Precision Medicine},
journal = {J. Biomed. Informatics},
volume = {87},
pages = {66--67},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.09.017},
doi = {10.1016/J.JBI.2018.09.017},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/AvatiJHDNS18,
author = {Anand Avati and
Kenneth Jung and
Stephanie Harman and
Lance Downing and
Andrew Y. Ng and
Nigam H. Shah},
title = {Improving palliative care with deep learning},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {18},
number = {{S-4}},
pages = {55--64},
year = {2018},
url = {https://doi.org/10.1186/s12911-018-0677-8},
doi = {10.1186/S12911-018-0677-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/AvatiJHDNS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/RajkomarO0DHHLL18,
author = {Alvin Rajkomar and
Eyal Oren and
Kai Chen and
Andrew M. Dai and
Nissan Hajaj and
Michaela Hardt and
Peter J. Liu and
Xiaobing Liu and
Jake Marcus and
Mimi Sun and
Patrik Sundberg and
Hector Yee and
Kun Zhang and
Yi Zhang and
Gerardo Flores and
Gavin E. Duggan and
Jamie Irvine and
Quoc Le and
Kurt Litsch and
Alexander Mossin and
Justin Tansuwan and
De Wang and
James Wexler and
Jimbo Wilson and
Dana Ludwig and
Samuel L. Volchenboum and
Katherine Chou and
Michael Pearson and
Srinivasan Madabushi and
Nigam H. Shah and
Atul J. Butte and
Michael D. Howell and
Claire Cui and
Gregory S. Corrado and
Jeffrey Dean},
title = {Scalable and accurate deep learning with electronic health records},
journal = {npj Digit. Medicine},
volume = {1},
year = {2018},
url = {https://doi.org/10.1038/s41746-018-0029-1},
doi = {10.1038/S41746-018-0029-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/RajkomarO0DHHLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChenRNFRVSH18,
author = {Ruijun Chen and
Patrick B. Ryan and
Karthik Natarajan and
Thomas Falconer and
Christian G. Reich and
Rohit Vashisht and
Nigam Shah and
George Hripcsak},
title = {Treatment Pathways in Patients with Cancer Using a Large-scale Observational
Data Network},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2976874-1.4263097/2976084-1.4263094},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChenRNFRVSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PfohlS18,
author = {Stephen R. Pfohl and
Nigam Shah},
title = {Transfer learning to adapt predictive models for pediatric patients
in the {EHR}},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2974593-1.4263333/2976802-1.4263330},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PfohlS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SeneviratneBBSH18,
author = {Martin G. Seneviratne and
Juan M. Banda and
James D. Brooks and
Nigam Shah and
Tina Hernandez{-}Boussard},
title = {Identifying cases of metastatic prostate cancer using machine learning
on electronic health records},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t005-1.4263615/t005-1.4263616/2976951-1.4263656/2975482-1.4263653},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SeneviratneBBSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PayneSTM18,
author = {Philip R. O. Payne and
Nigam H. Shah and
Jessica D. Tenenbaum and
Lara M. Mangravite},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {240--246},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/intro-demo.pdf},
timestamp = {Thu, 06 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/PayneSTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PooleS18,
author = {Sarah Poole and
Nigam Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Addressing vital sign alarm fatigue using personalized alarm thresholds},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {472--483},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/poole.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PooleS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/Shah18,
author = {Nigam Shah},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Biomedical Data/Content Acquisition, Curation},
booktitle = {Encyclopedia of Database Systems, Second Edition},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-1-4614-8265-9\_37},
doi = {10.1007/978-1-4614-8265-9\_37},
timestamp = {Thu, 14 Feb 2019 09:43:36 +0100},
biburl = {https://dblp.org/rec/reference/db/Shah18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-07860,
author = {Alvin Rajkomar and
Eyal Oren and
Kai Chen and
Andrew M. Dai and
Nissan Hajaj and
Peter J. Liu and
Xiaobing Liu and
Mimi Sun and
Patrik Sundberg and
Hector Yee and
Kun Zhang and
Gavin E. Duggan and
Gerardo Flores and
Michaela Hardt and
Jamie Irvine and
Quoc V. Le and
Kurt Litsch and
Jake Marcus and
Alexander Mossin and
Justin Tansuwan and
De Wang and
James Wexler and
Jimbo Wilson and
Dana Ludwig and
Samuel L. Volchenboum and
Katherine Chou and
Michael Pearson and
Srinivasan Madabushi and
Nigam H. Shah and
Atul J. Butte and
Michael D. Howell and
Claire Cui and
Greg Corrado and
Jeff Dean},
title = {Scalable and accurate deep learning for electronic health records},
journal = {CoRR},
volume = {abs/1801.07860},
year = {2018},
url = {http://arxiv.org/abs/1801.07860},
eprinttype = {arXiv},
eprint = {1801.07860},
timestamp = {Fri, 14 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-07860.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1804-05146,
author = {Alejandro Schuler and
Nigam Shah},
title = {General-purpose validation and model selection when estimating individual
treatment effects},
journal = {CoRR},
volume = {abs/1804.05146},
year = {2018},
url = {http://arxiv.org/abs/1804.05146},
eprinttype = {arXiv},
eprint = {1804.05146},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1804-05146.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-08324,
author = {Anand Avati and
Tony Duan and
Kenneth Jung and
Nigam H. Shah and
Andrew Y. Ng},
title = {Countdown Regression: Sharp and Calibrated Survival Predictions},
journal = {CoRR},
volume = {abs/1806.08324},
year = {2018},
url = {http://arxiv.org/abs/1806.08324},
eprinttype = {arXiv},
eprint = {1806.08324},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-08324.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-03331,
author = {Daisy Yi Ding and
Chlo{\'{e}} Simpson and
Stephen Pfohl and
Dave C. Kale and
Kenneth Jung and
Nigam H. Shah},
title = {The Effectiveness of Multitask Learning for Phenotyping with Electronic
Health Records Data},
journal = {CoRR},
volume = {abs/1808.03331},
year = {2018},
url = {http://arxiv.org/abs/1808.03331},
eprinttype = {arXiv},
eprint = {1808.03331},
timestamp = {Sun, 02 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-03331.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-04663,
author = {Stephen Pfohl and
Ben J. Marafino and
Adrien Coulet and
F{\'{a}}tima Rodriguez and
Latha Palaniappan and
Nigam H. Shah},
title = {Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk},
journal = {CoRR},
volume = {abs/1809.04663},
year = {2018},
url = {http://arxiv.org/abs/1809.04663},
eprinttype = {arXiv},
eprint = {1809.04663},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-04663.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1812-00371,
author = {Anand Avati and
Stephen Pfohl and
Chris Lin and
Thao Nguyen and
Meng Zhang and
Philip Hwang and
Jessica Wetstone and
Kenneth Jung and
Andrew Y. Ng and
Nigam H. Shah},
title = {Predicting Inpatient Discharge Prioritization With Electronic Health
Records},
journal = {CoRR},
volume = {abs/1812.00371},
year = {2018},
url = {http://arxiv.org/abs/1812.00371},
eprinttype = {arXiv},
eprint = {1812.00371},
timestamp = {Tue, 01 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1812-00371.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LowDSCSWLHMDFRS17,
author = {Yen S. Low and
Aaron C. Daugherty and
Elizabeth A. Schroeder and
William Chen and
Tina Seto and
Susan C. Weber and
Michael Lim and
Trevor Hastie and
Maya Mathur and
Manisha Desai and
Carl Farrington and
Andrew A. Radin and
Marina Sirota and
Pragati Kenkare and
Caroline A. Thompson and
Peter P. Yu and
Scarlett L. Gomez and
George W. Sledge and
Allison W. Kurian and
Nigam H. Shah},
title = {Synergistic drug combinations from electronic health records and gene
expression},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {3},
pages = {565--576},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocw161},
doi = {10.1093/JAMIA/OCW161},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LowDSCSWLHMDFRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HarpazDSBFHRSWW17,
author = {Rave Harpaz and
William DuMouchel and
Martijn J. Schuemie and
Olivier Bodenreider and
Carol Friedman and
Eric Horvitz and
Anna Ripple and
Alfred Sorbello and
Ryen W. White and
Rainer Winnenburg and
Nigam H. Shah},
title = {Toward multimodal signal detection of adverse drug reactions},
journal = {J. Biomed. Informatics},
volume = {76},
pages = {41--49},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.10.013},
doi = {10.1016/J.JBI.2017.10.013},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/HarpazDSBFHRSWW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DukeHRS17,
author = {Jon D. Duke and
George Hripcsak and
Patrick B. Ryan and
Nigam Shah},
title = {From Large-Scale Network Analytics to Clinical Solutions in {OHDSI}},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t002-1.4258887/f002-1.4258888/2731789-1.4258991/2732209-1.4258988},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/DukeHRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangSSC17,
author = {Jason K. Wang and
Alejandro Schuler and
Nigam Shah and
Jonathan H. Chen},
title = {Impact of Clinician Experience on Machine Learned Clinical Order Patterns},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2731495-1.4259065/2729597-1.4259062},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangSSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AvatiJHDNS17,
author = {Anand Avati and
Kenneth Jung and
Stephanie Harman and
Lance Downing and
Andrew Y. Ng and
Nigam H. Shah},
editor = {Xiaohua Hu and
Chi{-}Ren Shyu and
Yana Bromberg and
Jean Gao and
Yang Gong and
Dmitry Korkin and
Illhoi Yoo and
Huiru Jane Zheng},
title = {Improving palliative care with deep learning},
booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017},
pages = {311--316},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/BIBM.2017.8217669},
doi = {10.1109/BIBM.2017.8217669},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/AvatiJHDNS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/AgarwalSS17,
author = {Vibhu Agarwal and
Mathew Smuck and
Nigam Shah},
title = {Quantifying the relative change in physical activity after Total Knee
Arthroplasty using accelerometer based measurements},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t005-1.3521351/t005-1.3521352/a146-1.3521374},
timestamp = {Wed, 20 Jun 2018 17:09:15 +0200},
biburl = {https://dblp.org/rec/conf/cri/AgarwalSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/BandaHSS17,
author = {Juan M. Banda and
Yoni Halpern and
David A. Sontag and
Nigam Shah},
title = {Electronic phenotyping with {APHRODITE} and the Observational Health
Sciences and Informatics {(OHDSI)} data network},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a015-1.3521778/a016-1.3521775},
timestamp = {Fri, 15 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/BandaHSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/SchulerWLBESL17,
author = {Alejandro Schuler and
David A. Wulf and
Yun Lu and
Jennifer M. Baker and
Gabriel J. Escobar and
Nigam Shah and
Vincent X. Liu},
title = {A novel propensity modeling approach to estimate the causal impact
of acute organ dysfunction on long-term survival in sepsis},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a084-1.3521564/a085-1.3521561},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/SchulerWLBESL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/DuboisRJSK17,
author = {S{\'{e}}bastien Dubois and
Nathanael Romano and
Kenneth Jung and
Nigam Shah and
David C. Kale},
title = {The Effectiveness of Transfer Learning in Electronic Health Records
Data},
booktitle = {5th International Conference on Learning Representations, {ICLR} 2017,
Toulon, France, April 24-26, 2017, Workshop Track Proceedings},
publisher = {OpenReview.net},
year = {2017},
url = {https://openreview.net/forum?id=B1\_E8xrKe},
timestamp = {Thu, 04 Apr 2019 13:20:08 +0200},
biburl = {https://dblp.org/rec/conf/iclr/DuboisRJSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AgarwalS17,
author = {Vibhu Agarwal and
Nigam H. Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Learning Attributes of Disease Progression from Trajectories of Sparse
Lab Values},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {184--194},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/agarwal.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AgarwalS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PayneHST17,
author = {Philip R. O. Payne and
Kun Huang and
Nigam H. Shah and
Jessica D. Tenenbaum},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Open Data for Discovery Science},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {649--652},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/wkshop-opendata.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PayneHST17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DuboisDKSJ17,
author = {S{\'{e}}bastien Dubois and
Nathanael Romano and
Nigam Shah and
Kenneth Jung},
title = {Learning Effective Representations from Clinical Notes},
journal = {CoRR},
volume = {abs/1705.07025},
year = {2017},
url = {http://arxiv.org/abs/1705.07025},
eprinttype = {arXiv},
eprint = {1705.07025},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/DuboisDKSJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-06402,
author = {Anand Avati and
Kenneth Jung and
Stephanie Harman and
Lance Downing and
Andrew Y. Ng and
Nigam H. Shah},
title = {Improving Palliative Care with Deep Learning},
journal = {CoRR},
volume = {abs/1711.06402},
year = {2017},
url = {http://arxiv.org/abs/1711.06402},
eprinttype = {arXiv},
eprint = {1711.06402},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-06402.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OellrichCGRSBBG16,
author = {Anika Oellrich and
Nigel Collier and
Tudor Groza and
Dietrich Rebholz{-}Schuhmann and
Nigam Shah and
Olivier Bodenreider and
Mary Regina Boland and
Ivo I. Georgiev and
Hongfang Liu and
Kevin M. Livingston and
Augustin Luna and
Ann{-}Marie Mallon and
Prashanti Manda and
Peter N. Robinson and
Gabriella Rustici and
Michelle Simon and
Liqin Wang and
Rainer Winnenburg and
Michel Dumontier},
title = {The digital revolution in phenotyping},
journal = {Briefings Bioinform.},
volume = {17},
number = {5},
pages = {819--830},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv083},
doi = {10.1093/BIB/BBV083},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/OellrichCGRSBBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CallahanAASFPSV16,
author = {Alison Callahan and
Saminda Abeyruwan and
Hassan Al{-}Ali and
Kunie Sakurai and
Adam R. Ferguson and
Phillip G. Popovich and
Nigam H. Shah and
Ubbo Visser and
John L. Bixby and
Vance P. Lemmon},
title = {RegenBase: a knowledge base of spinal cord injury biology for translational
research},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw040},
doi = {10.1093/DATABASE/BAW040},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CallahanAASFPSV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VerspoorOCGRSDS16,
author = {Karin Verspoor and
Anika Oellrich and
Nigel Collier and
Tudor Groza and
Philippe Rocca{-}Serra and
Larisa N. Soldatova and
Michel Dumontier and
Nigam Shah},
title = {Thematic issue of the Second combined Bio-ontologies and Phenotypes
Workshop},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {66:1--66:4},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0108-7},
doi = {10.1186/S13326-016-0108-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/VerspoorOCGRSDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WinnenburgS16,
author = {Rainer Winnenburg and
Nigam H. Shah},
title = {Generalized enrichment analysis improves the detection of adverse
drug events from the biomedical literature},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {250},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1080-z},
doi = {10.1186/S12859-016-1080-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WinnenburgS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WileyTDFOSMS16,
author = {Laura K. Wiley and
Peter Tarczy{-}Hornoch and
Joshua C. Denny and
Robert R. Freimuth and
Casey L. Overby and
Nigam Shah and
Ross D. Martin and
Indra Neil Sarkar},
title = {Harnessing next-generation informatics for personalizing medicine:
a report from AMIA's 2014 Health Policy Invitational Meeting},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {2},
pages = {413--419},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv111},
doi = {10.1093/JAMIA/OCV111},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WileyTDFOSMS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AgarwalPBGLMSGS16,
author = {Vibhu Agarwal and
Tanya Podchiyska and
Juan M. Banda and
Veena Goel and
Tiffany I. Leung and
Evan P. Minty and
Timothy E. Sweeney and
Elsie Gyang and
Nigam H. Shah},
title = {Learning statistical models of phenotypes using noisy labeled training
data},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {6},
pages = {1166--1173},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocw028},
doi = {10.1093/JAMIA/OCW028},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AgarwalPBGLMSGS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/PooleSS16,
author = {Sarah Poole and
Lee Frederick Schroeder and
Nigam Shah},
title = {An unsupervised learning method to identify reference intervals from
a clinical database},
journal = {J. Biomed. Informatics},
volume = {59},
pages = {276--284},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2015.12.010},
doi = {10.1016/J.JBI.2015.12.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/PooleSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DukeSHR16,
author = {Jon D. Duke and
Nigam H. Shah and
George Hripcsak and
Patrick B. Ryan},
title = {Ensuring Reproducibility in Observational Research: Building and Sharing
Knowledge Resources in the {OHDSI} Network},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t002-1.3365085/f002-1.3365086/2493905-1.3365210/2498726-1.3365203},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/DukeSHR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuSMRJ16,
author = {Jianying Hu and
Nigam H. Shah and
Bradley A. Malin and
Patrick B. Ryan and
Anil Jain},
title = {Big Data for Healthcare and Life Sciences: Learning Useful Insights
from Imperfect Data},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t002-1.3365085/f002-1.3365086/2500097-1.3365189/2498668-1.3365186},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuSMRJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/VashishtJS16,
author = {Rohit Vashisht and
Kenneth Jung and
Nigam Shah},
title = {Learning Effective Treatment Pathways for Type-2 Diabetes from a clinical
data warehouse},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t007-1.3362675/f007-1.3362676/2499850-1.3362715/2499496-1.3362710},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/VashishtJS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/AgarwalHMSSS16,
author = {Vibhu Agarwal and
Lichy Han and
Isaac Madan and
Shaurya Saluja and
Aaditya Shidham and
Nigam Shah},
title = {Predicting hospital visits from geo-tagged Internet search logs},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a010-1.3012971},
timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
biburl = {https://dblp.org/rec/conf/cri/AgarwalHMSSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/DukeHSRH16,
author = {Jon D. Duke and
George Hripcsak and
Nigam Shah and
Patrick B. Ryan and
Vojtech Huser},
title = {Observational Health Data Sciences and Informatics {(OHDSI):} {A}
Rapidly Growing International Network for Open Science and Data Analytics
in Healthcare},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t002-1.3012976/f002-1.3012977/a005-1.3012990/a006-1.3012987},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/DukeHSRH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/NordenSPASKM16,
author = {Justin Norden and
Timothy E. Sweeney and
Aleksandra Pavlovic and
Euan A. Ashley and
Nigam Shah and
Cindy Kin and
Alexander Morgan},
title = {A Pilot Study of the Integration of a Quantified-self Wearable Device
with {EMR} data in the Acute Postoperative Setting},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t004-1.3012641/f004-1.3012642/a095-1.3012739/a097-1.3012734},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/NordenSPASKM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/PooleGS16,
author = {Sarah F. Poole and
Shaun J. Grannis and
Nigam Shah},
title = {Predicting Emergency Department Visits},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t006-1.3012375/f006-1.3012376/a232-1.3012385},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/PooleGS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ReganASSHSP16,
author = {Kelly Regan and
Zachary B. Abrams and
Michael F. Sharpnack and
Arunima Srivastava and
Kun Huang and
Nigam Shah and
Philip R. O. Payne},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Session Introduction},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {1--8},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/intro-discovery.pdf},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/ReganASSHSP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/SchulerLWCUSS16,
author = {Alejandro Schuler and
Vincent X. Liu and
Joe Wan and
Alison Callahan and
Madeleine Udell and
David E. Stark and
Nigam H. Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Discovering Patient Phenotypes Using Generalized Low Rank Models},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {144--155},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/schuler.pdf},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/SchulerLWCUSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaCOGVRD15,
author = {Larisa N. Soldatova and
Nigel Collier and
Anika Oellrich and
Tudor Groza and
Karin Verspoor and
Philippe Rocca{-}Serra and
Michel Dumontier and
Nigam H. Shah},
title = {Special issue on bio-ontologies and phenotypes},
journal = {J. Biomed. Semant.},
volume = {6},
pages = {40},
year = {2015},
url = {https://doi.org/10.1186/s13326-015-0040-2},
doi = {10.1186/S13326-015-0040-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaCOGVRD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JungLIBPS15,
author = {Kenneth Jung and
Paea LePendu and
Srinivasan Iyer and
Anna Bauer{-}Mehren and
Bethany Percha and
Nigam H. Shah},
title = {Functional evaluation of out-of-the-box text-mining tools for data-mining
tasks},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {1},
pages = {121--131},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2014-002902},
doi = {10.1136/AMIAJNL-2014-002902},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/JungLIBPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WangJWS15,
author = {Guan Wang and
Kenneth Jung and
Rainer Winnenburg and
Nigam H. Shah},
title = {A method for systematic discovery of adverse drug events from clinical
notes},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {6},
pages = {1196--1204},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv102},
doi = {10.1093/JAMIA/OCV102},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WangJWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/JungS15,
author = {Kenneth Jung and
Nigam H. Shah},
title = {Implications of non-stationarity on predictive modeling using EHRs},
journal = {J. Biomed. Informatics},
volume = {58},
pages = {168--174},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.10.006},
doi = {10.1016/J.JBI.2015.10.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/JungS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/CureMSL15,
author = {Olivier C. Cur{\'{e}} and
Henri Maurer and
Nigam H. Shah and
Paea LePendu},
title = {A formal concept analysis and semantic query expansion cooperation
to refine health outcomes of interest},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {15-S},
number = {{S-1}},
pages = {S8},
year = {2015},
url = {https://doi.org/10.1186/1472-6947-15-S1-S8},
doi = {10.1186/1472-6947-15-S1-S8},
timestamp = {Sun, 21 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/CureMSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ButteSTXZ15,
author = {Atul J. Butte and
Nigam Shah and
Nicholas P. Tatonetti and
Hua Xu and
Ping Zhang},
title = {Recent Advances in Computational Drug Repositioning},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t002-1.2745869/f002-1.2745870/2247667-1.2745943/2230525-1.2745940},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/ButteSTXZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DukeHSR15,
author = {Jon D. Duke and
George Hripcsak and
Nigam Shah and
Patrick B. Ryan},
title = {The Value of an Open-Source Observational Research Collaboratory:
Results from the {OHDSI} Initiative},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t002-1.2745869/f002-1.2745870/2237104-1.2745931/2247323-1.2745928},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/DukeHSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/HripcsakDSRHSSP15,
author = {George Hripcsak and
Jon D. Duke and
Nigam H. Shah and
Christian G. Reich and
Vojtech Huser and
Martijn J. Schuemie and
Marc A. Suchard and
Rae Woong Park and
Ian Chi Kei Wong and
Peter R. Rijnbeek and
Johan van der Lei and
Nicole Pratt and
G. Niklas Nor{\'{e}}n and
Yu{-}Chuan Li and
Paul E. Stang and
David Madigan and
Patrick B. Ryan},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Observational Health Data Sciences and Informatics {(OHDSI):} Opportunities
for Observational Researchers},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {574--578},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-574},
doi = {10.3233/978-1-61499-564-7-574},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/HripcsakDSRHSSP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OdgersHCSS15,
author = {David J. Odgers and
Rave Harpaz and
Alison Callahan and
Gregor Stiglic and
Nigam H. Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Analyzing Search Behavior of Healthcare Professionals for Drug Safety
Surveillance},
booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
pages = {306--317},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/odgers.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OdgersHCSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/BandaKSD15,
author = {Juan M. Banda and
Tobias Kuhn and
Nigam H. Shah and
Michel Dumontier},
editor = {Marcelo Arenas and
{\'{O}}scar Corcho and
Elena Simperl and
Markus Strohmaier and
Mathieu d'Aquin and
Kavitha Srinivas and
Paul Groth and
Michel Dumontier and
Jeff Heflin and
Krishnaprasad Thirunarayan and
Steffen Staab},
title = {Provenance-Centered Dataset of Drug-Drug Interactions},
booktitle = {The Semantic Web - {ISWC} 2015 - 14th International Semantic Web Conference,
Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9367},
pages = {293--300},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-25010-6\_18},
doi = {10.1007/978-3-319-25010-6\_18},
timestamp = {Tue, 07 Sep 2021 13:47:57 +0200},
biburl = {https://dblp.org/rec/conf/semweb/BandaKSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BandaKSD15,
author = {Juan M. Banda and
Tobias Kuhn and
Nigam H. Shah and
Michel Dumontier},
title = {Provenance-Centered Dataset of Drug-Drug Interactions},
journal = {CoRR},
volume = {abs/1507.05408},
year = {2015},
url = {http://arxiv.org/abs/1507.05408},
eprinttype = {arXiv},
eprint = {1507.05408},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/BandaKSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaRDS14,
author = {Larisa N. Soldatova and
Philippe Rocca{-}Serra and
Michel Dumontier and
Nigam H. Shah},
title = {Selected papers from the 16th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {5},
number = {{S-1}},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-S1-I1},
doi = {10.1186/2041-1480-5-S1-I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaRDS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/IyerHLBS14,
author = {Srinivasan V Iyer and
Rave Harpaz and
Paea LePendu and
Anna Bauer{-}Mehren and
Nigam H. Shah},
title = {Mining clinical text for signals of adverse drug-drug interactions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {2},
pages = {353--362},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2013-001612},
doi = {10.1136/AMIAJNL-2013-001612},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/IyerHLBS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HuangLITCS14,
author = {Sandy Huang and
Paea LePendu and
Srinivasan V Iyer and
Ming Tai{-}Seale and
David Carrell and
Nigam H. Shah},
title = {Toward personalizing treatment for depression: predicting diagnosis
and severity},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {6},
pages = {1069--1075},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2014-002733},
doi = {10.1136/AMIAJNL-2014-002733},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/HuangLITCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/Shah14,
author = {Nigam Shah},
editor = {Sofus A. Macskassy and
Claudia Perlich and
Jure Leskovec and
Wei Wang and
Rayid Ghani},
title = {Medicine in the age of electronic health records},
booktitle = {The 20th {ACM} {SIGKDD} International Conference on Knowledge Discovery
and Data Mining, {KDD} '14, New York, NY, {USA} - August 24 - 27,
2014},
pages = {1518},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2623330.2630822},
doi = {10.1145/2623330.2630822},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/Shah14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GonzalezCLGSKY14,
author = {Graciela Gonzalez and
Kevin Bretonnel Cohen and
Robert Leaman and
Casey S. Greene and
Nigam Shah and
Maricel G. Kann and
Jieping Ye},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Session introduction},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {312--315},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/intro-text.pdf},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GonzalezCLGSKY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/YangMLLS14,
author = {Jaewon Yang and
Julian J. McAuley and
Jure Leskovec and
Paea LePendu and
Nigam Shah},
editor = {Chin{-}Wan Chung and
Andrei Z. Broder and
Kyuseok Shim and
Torsten Suel},
title = {Finding progression stages in time-evolving event sequences},
booktitle = {23rd International World Wide Web Conference, {WWW} '14, Seoul, Republic
of Korea, April 7-11, 2014},
pages = {783--794},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2566486.2568044},
doi = {10.1145/2566486.2568044},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/www/YangMLLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSDS13,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Michel Dumontier and
Nigam H. Shah},
title = {Selected papers from the 15th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {4},
number = {{S-1}},
pages = {I1},
year = {2013},
url = {http://www.jbiomedsem.com/content/4/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSDS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WittkopTEFBPSM13,
author = {Tobias Wittkop and
Emily TerAvest and
Uday S. Evani and
K. Mathew Fleisch and
Ari E. Berman and
Corey Powell and
Nigam H. Shah and
Sean D. Mooney},
title = {{STOP} using just {GO:} a multi-ontology hypothesis generation tool
for high throughput experimentation},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {53},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-53},
doi = {10.1186/1471-2105-14-53},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WittkopTEFBPSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WhiteTSAH13,
author = {Ryen W. White and
Nicholas P. Tatonetti and
Nigam H. Shah and
Russ B. Altman and
Eric Horvitz},
title = {Web-scale pharmacovigilance: listening to signals from the crowd},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {3},
pages = {404--408},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001482},
doi = {10.1136/AMIAJNL-2012-001482},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WhiteTSAH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HarpazVDSHSCF13,
author = {Rave Harpaz and
Santiago Vilar and
William DuMouchel and
Hojjat Salmasian and
Krystl Haerian and
Nigam H. Shah and
Herbert S. Chase and
Carol Friedman},
title = {Combing signals from spontaneous reports and electronic health records
for detection of adverse drug reactions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {3},
pages = {413--419},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-000930},
doi = {10.1136/AMIAJNL-2012-000930},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/HarpazVDSHSCF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuangLITCS13,
author = {Sandy Huang and
Paea LePendu and
Srinivasan V Iyer and
Ming Tai{-}Seale and
David Carrell and
Nigam Shah},
title = {Predictive Models in Mental Health: From Diagnosis to Treatment},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-205-1.584834/a-212-1.584831},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuangLITCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShahLBIJCH13,
author = {Nigam Shah and
Paea LePendu and
Anna Bauer{-}Mehren and
Srinivasan V Iyer and
Kenneth Jung and
Tyler Cole and
Rave Harpaz},
title = {Learning Practice-based Evidence from Unstructured Clinical Notes},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-460-1.584742/a-475-1.584737},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShahLBIJCH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/CureMSL13,
author = {Olivier Cur{\'{e}} and
Henri Maurer and
Nigam Shah and
Paea LePendu},
editor = {Atul J. Butte and
Doheon Kim and
Min Song and
Hua Xu},
title = {Refining health outcomes of interest using formal concept analysis
and semantic query expansion},
booktitle = {Proceeding of the 7rd International Workshop on Data and Text Mining
in Bioinformatics, {DTMBIO} 2013, San Francisco, CA, USA, November
1, 2013},
pages = {5--6},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2512089.2512095},
doi = {10.1145/2512089.2512095},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/CureMSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/LiuDJLS13,
author = {Haishan Liu and
Dejing Dou and
Ruoming Jin and
Paea LePendu and
Nigam Shah},
title = {Mining Biomedical Ontologies and Data Using {RDF} Hypergraphs},
booktitle = {12th International Conference on Machine Learning and Applications,
{ICMLA} 2013, Miami, FL, USA, December 4-7, 2013, Volume 1},
pages = {141--146},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/ICMLA.2013.31},
doi = {10.1109/ICMLA.2013.31},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmla/LiuDJLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/HarpazDLS13,
author = {Rave Harpaz and
William DuMouchel and
Paea LePendu and
Nigam H. Shah},
editor = {Inderjit S. Dhillon and
Yehuda Koren and
Rayid Ghani and
Ted E. Senator and
Paul Bradley and
Rajesh Parekh and
Jingrui He and
Robert L. Grossman and
Ramasamy Uthurusamy},
title = {Empirical bayes model to combine signals of adverse drug reactions},
booktitle = {The 19th {ACM} {SIGKDD} International Conference on Knowledge Discovery
and Data Mining, {KDD} 2013, Chicago, IL, USA, August 11-14, 2013},
pages = {1339--1347},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2487575.2488214},
doi = {10.1145/2487575.2488214},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/HarpazDLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GonzalezCGHKLSY13,
author = {Graciela Gonzalez and
Kevin Bretonnel Cohen and
Casey S. Greene and
Udo Hahn and
Maricel G. Kann and
Robert Leaman and
Nigam Shah and
Jieping Ye},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
pages = {368--372},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/intro-textmining.pdf},
timestamp = {Wed, 25 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/GonzalezCGHKLSY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/CureMSL13,
author = {Olivier Cur{\'{e}} and
Henri Maurer and
Nigam Shah and
Paea LePendu},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Refining Health Outcomes of Interest using Formal Concept Analysis
and Semantic Query Expansion},
booktitle = {Proceedings of the 6th International Workshop on Semantic Web Applications
and Tools for Life Sciences, Edinburgh, UK, December 10, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1114},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1114/Session1\_Cure.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/CureMSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HahnCGS12,
author = {Udo Hahn and
Kevin Bretonnel Cohen and
Yael Garten and
Nigam H. Shah},
title = {Mining the pharmacogenomics literature - a survey of the state of
the art},
journal = {Briefings Bioinform.},
volume = {13},
number = {4},
pages = {460--494},
year = {2012},
url = {https://doi.org/10.1093/bib/bbs018},
doi = {10.1093/BIB/BBS018},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HahnCGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSDS12,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Michel Dumontier and
Nigam H. Shah},
title = {Selected papers from the 14th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-1}},
pages = {I1},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LePenduIFS12,
author = {Paea LePendu and
Srinivasan V Iyer and
C{\'{e}}drick Fairon and
Nigam H. Shah},
title = {Annotation Analysis for Testing Drug Safety Signals using Unstructured
Clinical Notes},
journal = {J. Biomed. Semant.},
volume = {3},
number = {{S-1}},
pages = {S5},
year = {2012},
url = {http://www.jbiomedsem.com/content/3/S1/S5},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/LePenduIFS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MusenNSWCSS12,
author = {Mark A. Musen and
Natalya Fridman Noy and
Nigam H. Shah and
Patricia L. Whetzel and
Christopher G. Chute and
Margaret{-}Anne D. Storey and
Barry Smith},
title = {The National Center for Biomedical Ontology},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {190--195},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000523},
doi = {10.1136/AMIAJNL-2011-000523},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MusenNSWCSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuCLS12,
author = {Yi Liu and
Adrien Coulet and
Paea LePendu and
Nigam H. Shah},
title = {Using ontology-based annotation to profile disease research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000631},
doi = {10.1136/AMIAJNL-2011-000631},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LiuCLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ShahT12,
author = {Nigam H. Shah and
Jessica D. Tenenbaum},
title = {The coming age of data-driven medicine: translational bioinformatics'
next frontier},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2012-000969},
doi = {10.1136/AMIAJNL-2012-000969},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ShahT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuLLTMCS12,
author = {Stephen T. Wu and
Hongfang Liu and
Dingcheng Li and
Cui Tao and
Mark A. Musen and
Christopher G. Chute and
Nigam H. Shah},
title = {Unified Medical Language System term occurrences in clinical notes:
a large-scale corpus analysis},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000744},
doi = {10.1136/AMIAJNL-2011-000744},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WuLLTMCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ShahCM12,
author = {Nigam H. Shah and
Tyler Cole and
Mark A. Musen},
title = {Chapter 9: Analyses Using Disease Ontologies},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {12},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002827},
doi = {10.1371/JOURNAL.PCBI.1002827},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ShahCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scfbm/NeylonABCHLMMPSSSVW12,
author = {Cameron Neylon and
Jan Aerts and
C. Titus Brown and
Simon J. Coles and
Les Hatton and
Daniel Lemire and
K. Jarrod Millman and
Peter Murray{-}Rust and
Fernando P{\'{e}}rez and
Neil F. W. Saunders and
Nigam Shah and
Arfon M. Smith and
Ga{\"{e}}l Varoquaux and
Egon L. Willighagen},
title = {Changing computational research. The challenges ahead},
journal = {Source Code Biol. Medicine},
volume = {7},
pages = {2},
year = {2012},
url = {https://doi.org/10.1186/1751-0473-7-2},
doi = {10.1186/1751-0473-7-2},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/scfbm/NeylonABCHLMMPSSSVW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aina/ByambajavWRLS12,
author = {Byambajargal Byambajav and
Tomasz Wiktor Wlodarczyk and
Chunming Rong and
Paea LePendu and
Nigam Shah},
editor = {Leonard Barolli and
Tomoya Enokido and
Fatos Xhafa and
Makoto Takizawa},
title = {Performance of Left Outer Join on Hadoop with Right Side within Single
Node Memory Size},
booktitle = {26th International Conference on Advanced Information Networking and
Applications Workshops, {WAINA} 2012, Fukuoka, Japan, March 26-29,
2012},
pages = {1075--1080},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/WAINA.2012.20},
doi = {10.1109/WAINA.2012.20},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aina/ByambajavWRLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/CohenGSH12,
author = {Kevin Bretonnel Cohen and
Yael Garten and
Nigam Shah and
Udo Hahn},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {375},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/intro-textmining.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/CohenGSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/semweb/2012satbi,
editor = {Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
Jyotishman Pathak and
Mark D. Wilkinson and
Nigam Shah and
Robert Stevens and
Richard D. Boyce and
{\'{A}}ngel Garc{\'{\i}}a{-}Crespo},
title = {Proceedings of the Joint Workshop on Semantic Technologies Applied
to Biomedical Informatics and Individualized Medicine, Boston, USA,
November 12, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {930},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-930},
urn = {urn:nbn:de:0074-930-6},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/2012satbi.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TirmiziAMMSSM11,
author = {Syed Hamid Tirmizi and
Stuart Aitken and
Dilvan A. Moreira and
Chris Mungall and
Juan F. Sequeda and
Nigam H. Shah and
Daniel P. Miranker},
title = {Mapping between the {OBO} and {OWL} ontology languages},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-1}},
pages = {S3},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S1/S3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/TirmiziAMMSSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaSSS11,
author = {Larisa N. Soldatova and
Susanna{-}Assunta Sansone and
Susie Stephens and
Nigam H. Shah},
title = {Selected papers from the 13th Annual Bio-Ontologies Special Interest
Group Meeting},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {I1},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaSSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CouletGDAMS11,
author = {Adrien Coulet and
Yael Garten and
Michel Dumontier and
Russ B. Altman and
Mark A. Musen and
Nigam H. Shah},
title = {Integration and publication of heterogeneous text-mined relationships
on the Semantic Web},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {S10},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/S10},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CouletGDAMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CallahanDS11,
author = {Alison Callahan and
Michel Dumontier and
Nigam H. Shah},
title = {HyQue: evaluating hypotheses using Semantic Web technologies},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-2}},
pages = {S3},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S2/S3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CallahanDS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ButteS11,
author = {Atul J. Butte and
Nigam H. Shah},
title = {Computationally translating molecular discoveries into tools for medicine:
translational bioinformatics articles now featured in \emph{JAMIA}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {352--353},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000343},
doi = {10.1136/AMIAJNL-2011-000343},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ButteS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LePenduMS11,
author = {Paea LePendu and
Mark A. Musen and
Nigam H. Shah},
title = {Enabling enrichment analysis with the Human Disease Ontology},
journal = {J. Biomed. Informatics},
volume = {44},
number = {Supplement-1},
pages = {S31--S38},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2011.04.007},
doi = {10.1016/J.JBI.2011.04.007},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LePenduMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WhetzelNSANTM11,
author = {Patricia L. Whetzel and
Natalya Fridman Noy and
Nigam H. Shah and
Paul R. Alexander and
Csongor Nyulas and
Tania Tudorache and
Mark A. Musen},
title = {BioPortal: enhanced functionality via new Web services from the National
Center for Biomedical Ontology to access and use ontologies in software
applications},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Web-Server-Issue},
pages = {541--545},
year = {2011},
url = {https://doi.org/10.1093/nar/gkr469},
doi = {10.1093/NAR/GKR469},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WhetzelNSANTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ws/JonquetLFCNMS11,
author = {Cl{\'{e}}ment Jonquet and
Paea LePendu and
Sean M. Falconer and
Adrien Coulet and
Natalya Fridman Noy and
Mark A. Musen and
Nigam H. Shah},
title = {{NCBO} Resource Index: Ontology-based search and mining of biomedical
resources},
journal = {J. Web Semant.},
volume = {9},
number = {3},
pages = {316--324},
year = {2011},
url = {https://doi.org/10.1016/j.websem.2011.06.005},
doi = {10.1016/J.WEBSEM.2011.06.005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ws/JonquetLFCNMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aswc/TaoNSSMC11,
author = {Cui Tao and
Natalya Fridman Noy and
Harold R. Solbrig and
Nigam H. Shah and
Mark A. Musen and
Christopher G. Chute},
editor = {Jeff Z. Pan and
Huajun Chen and
Hong{-}Gee Kim and
Juanzi Li and
Zhe Wu and
Ian Horrocks and
Riichiro Mizoguchi and
Zhaohui Wu},
title = {Proposed {SKOS} Extensions for BioPortal Terminology Services},
booktitle = {The Semantic Web - Joint International Semantic Technology Conference,
{JIST} 2011, Hangzhou, China, December 4-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7185},
pages = {342--349},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-29923-0\_23},
doi = {10.1007/978-3-642-29923-0\_23},
timestamp = {Tue, 12 Apr 2022 14:46:29 +0200},
biburl = {https://dblp.org/rec/conf/aswc/TaoNSSMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LePenduMS11,
author = {Paea LePendu and
Mark A. Musen and
Nigam H. Shah},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {The Age of Data-Driven Medicine: Mining the Electronic Health Record},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper86.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LePenduMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WhetzelJYDFMS11,
author = {Patricia L. Whetzel and
Cl{\'{e}}ment Jonquet and
Cherie Youn and
Michael Dorf and
Ray W. Fergerson and
Mark A. Musen and
Nigam Shah},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {The {NCBO} Annotator: Ontology-Based Annotation as a Web Service},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper57.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WhetzelJYDFMS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WhetzelNSADFSSCM11,
author = {Patricia L. Whetzel and
Natasha F. Noy and
Nigam Shah and
Paul R. Alexander and
Michael Dorf and
Ray W. Fergerson and
Margaret{-}Anne D. Storey and
Barry Smith and
Christopher G. Chute and
Mark A. Musen},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Bioportal: Ontologies and Integrated Data Resources at the Click of
a Mouse},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper52.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WhetzelNSADFSSCM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/CohenGHS11,
author = {Kevin Bretonnel Cohen and
Yael Garten and
Udo Hahn and
Nigam H. Shah},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Workshop Introduction},
booktitle = {Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 3-7 January 2011},
pages = {362--363},
publisher = {World Scientific Publishing},
year = {2011},
url = {http://psb.stanford.edu/psb-online/proceedings/psb11/wkshop-pharma.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/CohenGHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoederJSBVH10,
author = {Christophe Roeder and
Cl{\'{e}}ment Jonquet and
Nigam H. Shah and
William A. Baumgartner Jr. and
Karin Verspoor and
Lawrence Hunter},
title = {A {UIMA} wrapper for the {NCBO} annotator},
journal = {Bioinform.},
volume = {26},
number = {14},
pages = {1800--1801},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq250},
doi = {10.1093/BIOINFORMATICS/BTQ250},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoederJSBVH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SoldatovaLSSS10,
author = {Larisa N. Soldatova and
Phillip W. Lord and
Susanna{-}Assunta Sansone and
Susie Stephens and
Nigam H. Shah},
title = {Selected papers from the 12\({}^{\mbox{th}}\) annual Bio-Ontologies
meeting},
journal = {J. Biomed. Semant.},
volume = {1},
number = {{S-1}},
pages = {I1},
year = {2010},
url = {http://www.jbiomedsem.com/content/1/S1/I1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SoldatovaLSSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JonquetMS10,
author = {Cl{\'{e}}ment Jonquet and
Mark A. Musen and
Nigam H. Shah},
title = {Building a biomedical ontology recommender web service},
journal = {J. Biomed. Semant.},
volume = {1},
number = {{S-1}},
pages = {S1},
year = {2010},
url = {http://www.jbiomedsem.com/content/1/S1/S1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/JonquetMS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/CouletSGMA10,
author = {Adrien Coulet and
Nigam H. Shah and
Yael Garten and
Mark A. Musen and
Russ B. Altman},
title = {Using text to build semantic networks for pharmacogenomics},
journal = {J. Biomed. Informatics},
volume = {43},
number = {6},
pages = {1009--1019},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.08.005},
doi = {10.1016/J.JBI.2010.08.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/CouletSGMA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-ic/JonquetCSM10,
author = {Cl{\'{e}}ment Jonquet and
Adrien Coulet and
Nigam H. Shah and
Mark A. Musen},
editor = {Sylvie Despr{\`{e}}s},
title = {Indexation et int{\'{e}}gration de ressources textuelles {\`{a}}
l'aide d'ontologies : application au domaine biom{\'{e}}dical},
booktitle = {{IC} 2010 : 21es Journ{\'{e}}es Ing{\'{e}}nierie des Connaissances
2010 (Proceedings of the 21st French Knowledge Engineering Conference),
N{\^{\i}}mes, France, June 8-10, 2010},
pages = {271--282},
publisher = {Presse des Mines},
year = {2010},
timestamp = {Fri, 05 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/f-ic/JonquetCSM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/CouletSHBA10,
author = {Adrien Coulet and
Nigam H. Shah and
Lawrence Hunter and
Chitta Baral and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Extraction of Genotype-Phenotype-Drug Relationships from Text: From
Entity Recognition to Bioinformatics Application},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {485--487},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/wkshp-gdp.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/CouletSHBA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/LePenduNJASM10,
author = {Paea LePendu and
Natalya Fridman Noy and
Cl{\'{e}}ment Jonquet and
Paul R. Alexander and
Nigam H. Shah and
Mark A. Musen},
editor = {Peter F. Patel{-}Schneider and
Yue Pan and
Pascal Hitzler and
Peter Mika and
Lei Zhang and
Jeff Z. Pan and
Ian Horrocks and
Birte Glimm},
title = {Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large
Knowledge Bases},
booktitle = {The Semantic Web - {ISWC} 2010 - 9th International Semantic Web Conference,
{ISWC} 2010, Shanghai, China, November 7-11, 2010, Revised Selected
Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {6496},
pages = {486--501},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-17746-0\_31},
doi = {10.1007/978-3-642-17746-0\_31},
timestamp = {Tue, 12 Apr 2022 14:46:29 +0200},
biburl = {https://dblp.org/rec/conf/semweb/LePenduNJASM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShahJCBCM09,
author = {Nigam H. Shah and
Cl{\'{e}}ment Jonquet and
Annie P. Chiang and
Atul J. Butte and
Rong Chen and
Mark A. Musen},
title = {Ontology-driven indexing of public datasets for translational bioinformatics},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-2}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S2-S1},
doi = {10.1186/1471-2105-10-S2-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShahJCBCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShahBJRCM09,
author = {Nigam H. Shah and
Nipun Bhatia and
Cl{\'{e}}ment Jonquet and
Daniel L. Rubin and
Annie P. Chiang and
Mark A. Musen},
title = {Comparison of concept recognizers for building the Open Biomedical
Annotator},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-9}},
pages = {14},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S9-S14},
doi = {10.1186/1471-2105-10-S9-S14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShahBJRCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NoySWDDGJRSCM09,
author = {Natalya Fridman Noy and
Nigam H. Shah and
Patricia L. Whetzel and
Benjamin Dai and
Michael Dorf and
Nicholas Griffith and
Cl{\'{e}}ment Jonquet and
Daniel L. Rubin and
Margaret{-}Anne D. Storey and
Christopher G. Chute and
Mark A. Musen},
title = {BioPortal: ontologies and integrated data resources at the click of
a mouse},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {170--173},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp440},
doi = {10.1093/NAR/GKP440},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NoySWDDGJRSCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/GhazvinianNJSM09,
author = {Amir Ghazvinian and
Natalya Fridman Noy and
Cl{\'{e}}ment Jonquet and
Nigam H. Shah and
Mark A. Musen},
editor = {Abraham Bernstein and
David R. Karger and
Tom Heath and
Lee Feigenbaum and
Diana Maynard and
Enrico Motta and
Krishnaprasad Thirunarayan},
title = {What Four Million Mappings Can Tell You about Two Hundred Ontologies},
booktitle = {The Semantic Web - {ISWC} 2009, 8th International Semantic Web Conference,
{ISWC} 2009, Chantilly, VA, USA, October 25-29, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5823},
pages = {229--242},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04930-9\_15},
doi = {10.1007/978-3-642-04930-9\_15},
timestamp = {Tue, 07 Sep 2021 13:47:49 +0200},
biburl = {https://dblp.org/rec/conf/semweb/GhazvinianNJSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/TirmiziAMMSSM09,
author = {Syed Hamid Tirmizi and
Stuart Aitken and
Dilvan A. Moreira and
Chris Mungall and
Juan F. Sequeda and
Nigam H. Shah and
Daniel P. Miranker},
editor = {M. Scott Marshall and
Albert Burger and
Paolo Romano and
Adrian Paschke and
Andrea Splendiani},
title = {{OBO} {\&} {OWL:} Roundtrip Ontology Transformations},
booktitle = {Proceedings of the Workshop on Semantic Web Applications and Tools
for Life Sciences, Amsterdam, The Netherlands, November 20, 2009},
series = {{CEUR} Workshop Proceedings},
volume = {559},
publisher = {CEUR-WS.org},
year = {2009},
url = {https://ceur-ws.org/Vol-559/Paper6.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/TirmiziAMMSSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ihis/ShahM09,
author = {Nigam H. Shah and
Mark A. Musen},
editor = {Steffen Staab and
Rudi Studer},
title = {Ontologies for Formal Representation of Biological Systems},
booktitle = {Handbook on Ontologies},
series = {International Handbooks on Information Systems},
pages = {445--461},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-540-92673-3\_20},
doi = {10.1007/978-3-540-92673-3\_20},
timestamp = {Wed, 14 Nov 2018 10:12:16 +0100},
biburl = {https://dblp.org/rec/series/ihis/ShahM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/Shah09,
author = {Nigam Shah},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Biomedical Data/Content Acquisition, Curation},
booktitle = {Encyclopedia of Database Systems},
pages = {224--229},
publisher = {Springer {US}},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-39940-9\_37},
doi = {10.1007/978-0-387-39940-9\_37},
timestamp = {Sun, 02 Jun 2019 21:10:27 +0200},
biburl = {https://dblp.org/rec/reference/db/Shah09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ao/KotechaBLS08,
author = {Nikesh Kotecha and
Kyle Bruck and
William Lu and
Nigam Shah},
title = {Pathway knowledge base: An integrated pathway resource using BioPAX},
journal = {Appl. Ontology},
volume = {3},
number = {4},
pages = {235--245},
year = {2008},
url = {https://doi.org/10.3233/AO-2008-0054},
doi = {10.3233/AO-2008-0054},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ao/KotechaBLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RubinSN08,
author = {Daniel L. Rubin and
Nigam Shah and
Natalya Fridman Noy},
title = {Biomedical ontologies: a functional perspective},
journal = {Briefings Bioinform.},
volume = {9},
number = {1},
pages = {75--90},
year = {2008},
url = {https://doi.org/10.1093/bib/bbm059},
doi = {10.1093/BIB/BBM059},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/RubinSN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MarinelliMLSPNZSNWRBB08,
author = {Robert J. Marinelli and
Kelli Montgomery and
Chih Long Liu and
Nigam H. Shah and
Wijan Prapong and
Michael Nitzberg and
Zachariah K. Zachariah and
Gavin Sherlock and
Yasodha Natkunam and
Robert B. West and
Matt van de Rijn and
Patrick O. Brown and
Catherine A. Ball},
title = {The Stanford Tissue Microarray Database},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {871--877},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm861},
doi = {10.1093/NAR/GKM861},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MarinelliMLSPNZSNWRBB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LeeSSM08,
author = {Wei{-}Nchih Lee and
Nigam Shah and
Karanjot Sundlass and
Mark A. Musen},
title = {Comparison of Ontology-based Semantic-Similarity Measures},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-079-1.626327/a-080-1.626324},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/LeeSSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShahM08,
author = {Nigam H. Shah and
Mark A. Musen},
title = {UMLS-Query: {A} Perl Module for Querying the {UMLS}},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-135-1.626159/a-136-1.626156},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShahM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/JonquetMS08,
author = {Cl{\'{e}}ment Jonquet and
Mark A. Musen and
Nigam Shah},
editor = {Amos Bairoch and
Sarah Cohen Boulakia and
Christine Froidevaux},
title = {A System for Ontology-Based Annotation of Biomedical Data},
booktitle = {Data Integration in the Life Sciences, 5th International Workshop,
{DILS} 2008, Evry, France, June 25-27, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5109},
pages = {144--152},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69828-9\_14},
doi = {10.1007/978-3-540-69828-9\_14},
timestamp = {Mon, 16 Sep 2019 15:28:31 +0200},
biburl = {https://dblp.org/rec/conf/dils/JonquetMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/NoySDDGJMRYM08,
author = {Natalya Fridman Noy and
Nigam Shah and
Benjamin Dai and
Michael Dorf and
Nicholas Griffith and
Cl{\'{e}}ment Jonquet and
Michael Montegut and
Daniel L. Rubin and
Cherie Youn and
Mark A. Musen},
editor = {Christian Bizer and
Anupam Joshi},
title = {BioPortal: {A} Web Repository for Biomedical Ontologies and Data Resources},
booktitle = {Proceedings of the Poster and Demonstration Session at the 7th International
Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 28,
2008},
series = {{CEUR} Workshop Proceedings},
volume = {401},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-401/iswc2008pd\_submission\_25.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:06 +0100},
biburl = {https://dblp.org/rec/conf/semweb/NoySDDGJMRYM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SrinivasanSFANB07,
author = {Balaji S. Srinivasan and
Nigam H. Shah and
Jason Flannick and
Eduardo Abeliuk and
Antal F. Novak and
Serafim Batzoglou},
title = {Current progress in network research: toward reference networks for
key model organisms},
journal = {Briefings Bioinform.},
volume = {8},
number = {5},
pages = {318--332},
year = {2007},
url = {https://doi.org/10.1093/bib/bbm038},
doi = {10.1093/BIB/BBM038},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SrinivasanSFANB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShahREMM07,
author = {Nigam H. Shah and
Daniel L. Rubin and
Inigo Espinosa and
Kelli Montgomery and
Mark A. Musen},
title = {Annotation and query of tissue microarray data using the {NCI} Thesaurus},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-296},
doi = {10.1186/1471-2105-8-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShahREMM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoreiraSM07,
author = {Dilvan A. Moreira and
Nigam H. Shah and
Mark A. Musen},
title = {Interpretation Errors related to the {GO} Annotation File Format},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-102-1.624822/a-103-1.624819},
timestamp = {Wed, 17 Apr 2024 11:48:14 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoreiraSM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/LeeRSSRN07,
author = {Woei{-}Jyh Lee and
Louiqa Raschid and
Padmini Srinivasan and
Nigam Shah and
Daniel L. Rubin and
Natasha Fridman Noy},
editor = {Sarah Cohen Boulakia and
Val Tannen},
title = {Using Annotations from Controlled Vocabularies to Find Meaningful
Associations},
booktitle = {Data Integration in the Life Sciences, 4th International Workshop,
{DILS} 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4544},
pages = {247--263},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73255-6\_20},
doi = {10.1007/978-3-540-73255-6\_20},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/LeeRSSRN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kcap/AlaniNSSM07,
author = {Harith Alani and
Natasha Fridman Noy and
Nigam Shah and
Nigel Shadbolt and
Mark A. Musen},
editor = {Derek H. Sleeman and
Ken Barker},
title = {Searching ontologies based on content: experiments in the biomedical
domain},
booktitle = {Proceedings of the 4th International Conference on Knowledge Capture
{(K-CAP} 2007), October 28-31, 2007, Whistler, BC, Canada},
pages = {55--62},
publisher = {{ACM}},
year = {2007},
url = {https://doi.org/10.1145/1298406.1298418},
doi = {10.1145/1298406.1298418},
timestamp = {Mon, 24 Aug 2020 15:16:10 +0200},
biburl = {https://dblp.org/rec/conf/kcap/AlaniNSSM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RacunasSF06,
author = {Stephen A. Racunas and
Nigam Shah and
Nina V. Fedoroff},
title = {A case study in pathway knowledgebase verification},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {196},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-196},
doi = {10.1186/1471-2105-7-196},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RacunasSF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShahRSM06,
author = {Nigam H. Shah and
Daniel L. Rubin and
Kaustubh S. Supekar and
Mark A. Musen},
title = {Ontology-based Annotation and Query of Tissue Microarray Data},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-001-1.623243/f-001-1.623244/a-142-1.623321/a-143-1.623318},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShahRSM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahF04,
author = {N. H. Shah and
Nina V. Fedoroff},
title = {{CLENCH:} a program for calculating Cluster ENriCHment using the Gene
Ontology},
journal = {Bioinform.},
volume = {20},
number = {7},
pages = {1196--1197},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth056},
doi = {10.1093/BIOINFORMATICS/BTH056},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/RacunasGS04,
author = {Stephen A. Racunas and
Christopher Griffin and
Nigam Shah},
title = {A Finite Model Theory for Biological Hypotheses},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {616--620},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332518},
doi = {10.1109/CSB.2004.1332518},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/RacunasGS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RacunasSAF04,
author = {Stephen A. Racunas and
N. H. Shah and
Istv{\'{a}}n Albert and
Nina V. Fedoroff},
title = {HyBrow: a prototype system for computer-aided hypothesis evaluation},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {257--264},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth905},
doi = {10.1093/BIOINFORMATICS/BTH905},
timestamp = {Fri, 06 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/RacunasSAF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahKSF03,
author = {N. H. Shah and
D. C. King and
P. N. Shah and
Nina V. Fedoroff},
title = {A tool-kit for cDNA microarray and promoter analysis},
journal = {Bioinform.},
volume = {19},
number = {14},
pages = {1846--1848},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg253},
doi = {10.1093/BIOINFORMATICS/BTG253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahKSF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/ShahLTS03,
author = {Nigam Shah and
Jorge Lepre and
Yuhai Tu and
Gustavo Stolovitzky},
title = {Can We Identify Cellular Pathways Implicated in Cancer Using Gene
Expression Data?},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {94--103},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227308},
doi = {10.1109/CSB.2003.1227308},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/ShahLTS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/RacunasSF03,
author = {Steve Racunas and
Nigam Shah and
Nina V. Fedoroff},
title = {A Contradiction-Based Framework for Testing Gene Regulation Hypotheses},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {634--638},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227430},
doi = {10.1109/CSB.2003.1227430},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/RacunasSF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vlsi/JoneSGD96,
author = {Wen{-}Ben Jone and
Nigam Shah and
Anita Gleason and
Sunil R. Das},
title = {{PGEN:} {A} Novel Approach to Sequential Circuit Test Generation},
journal = {{VLSI} Design},
volume = {4},
number = {3},
pages = {149--165},
year = {1996},
url = {https://doi.org/10.1155/1996/68463},
doi = {10.1155/1996/68463},
timestamp = {Mon, 07 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/vlsi/JoneSGD96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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