BibTeX records: Morgan Similuk

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@article{DBLP:journals/jbi/YanLLVOXGSRL22,
  author       = {Shankai Yan and
                  Ling Luo and
                  Po{-}Ting Lai and
                  Daniel Veltri and
                  Andrew J. Oler and
                  Sandhya Xirasagar and
                  Rajarshi Ghosh and
                  Morgan Similuk and
                  Peter N. Robinson and
                  Zhiyong Lu},
  title        = {PhenoRerank: {A} re-ranking model for phenotypic concept recognition
                  pre-trained on human phenotype ontology},
  journal      = {J. Biomed. Informatics},
  volume       = {129},
  pages        = {104059},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.jbi.2022.104059},
  doi          = {10.1016/J.JBI.2022.104059},
  timestamp    = {Tue, 16 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbi/YanLLVOXGSRL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/amia/YanLFVOGWSWL22,
  author       = {Shankai Yan and
                  Ling Luo and
                  Li Fang and
                  Daniel Veltri and
                  Andrew J. Oler and
                  Rajarshi Ghosh and
                  Chih{-}Hsuan Wei and
                  Morgan Similuk and
                  Kai Wang and
                  Zhiyong Lu},
  title        = {PhenoGene: Disease-gene prioritization using graph embedding on patient
                  phenotypic profiles},
  booktitle    = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
                  Washington, DC, USA, November 5-9, 2022},
  publisher    = {{AMIA}},
  year         = {2022},
  url          = {https://knowledge.amia.org/76677-amia-1.4637602/f007-1.4641746/f007-1.4641747/358-1.4641772/347-1.4641769},
  timestamp    = {Wed, 17 Apr 2024 11:46:45 +0200},
  biburl       = {https://dblp.org/rec/conf/amia/YanLFVOGWSWL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LuoYLVOXGSRL21,
  author       = {Ling Luo and
                  Shankai Yan and
                  Po{-}Ting Lai and
                  Daniel Veltri and
                  Andrew J. Oler and
                  Sandhya Xirasagar and
                  Rajarshi Ghosh and
                  Morgan Similuk and
                  Peter N. Robinson and
                  Zhiyong Lu},
  title        = {PhenoTagger: a hybrid method for phenotype concept recognition using
                  human phenotype ontology},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {13},
  pages        = {1884--1890},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab019},
  doi          = {10.1093/BIOINFORMATICS/BTAB019},
  timestamp    = {Thu, 16 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LuoYLVOXGSRL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/ShefchekHGMUBKC20,
  author       = {Kent A. Shefchek and
                  Nomi L. Harris and
                  Michael A. Gargano and
                  Nicolas Matentzoglu and
                  Deepak R. Unni and
                  Matthew H. Brush and
                  Dan Keith and
                  Tom Conlin and
                  Nicole A. Vasilevsky and
                  Xingmin Aaron Zhang and
                  James P. Balhoff and
                  Larry Babb and
                  Susan M. Bello and
                  Hannah Blau and
                  Yvonne M. Bradford and
                  Seth Carbon and
                  Leigh Carmody and
                  Lauren E. Chan and
                  Valentina Cipriani and
                  Alayne Cuzick and
                  Maria G. Della Rocca and
                  Nathan A. Dunn and
                  Shahim Essaid and
                  Petra Fey and
                  Christian A. Grove and
                  Jean{-}Philippe F. Gourdine and
                  Ada Hamosh and
                  Midori A. Harris and
                  Ingo Helbig and
                  Maureen E. Hoatlin and
                  Marcin P. Joachimiak and
                  Simon Jupp and
                  Kenneth B. Lett and
                  Suzanna E. Lewis and
                  Craig McNamara and
                  Zo{\"{e}} May Pendlington and
                  Clare Pilgrim and
                  Tim E. Putman and
                  Vida Ravanmehr and
                  Justin T. Reese and
                  Erin Rooney Riggs and
                  Sofia M. C. Robb and
                  Paola Roncaglia and
                  James Seager and
                  Erik Segerdell and
                  Morgan Similuk and
                  Andrea L. Storm and
                  Courtney Thaxon and
                  Anne E. Thessen and
                  Julius O. B. Jacobsen and
                  Julie A. McMurry and
                  Tudor Groza and
                  Sebastian K{\"{o}}hler and
                  Damian Smedley and
                  Peter N. Robinson and
                  Christopher J. Mungall and
                  Melissa A. Haendel and
                  Monica C. Munoz{-}Torres and
                  David Osumi{-}Sutherland},
  title        = {The Monarch Initiative in 2019: an integrative data and analytic platform
                  connecting phenotypes to genotypes across species},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D704--D715},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz997},
  doi          = {10.1093/NAR/GKZ997},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ShefchekHGMUBKC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2009-08478,
  author       = {Ling Luo and
                  Shankai Yan and
                  Po{-}Ting Lai and
                  Daniel Veltri and
                  Andrew J. Oler and
                  Sandhya Xirasagar and
                  Rajarshi Ghosh and
                  Morgan Similuk and
                  Peter N. Robinson and
                  Zhiyong Lu},
  title        = {PhenoTagger: {A} Hybrid Method for Phenotype Concept Recognition using
                  Human Phenotype Ontology},
  journal      = {CoRR},
  volume       = {abs/2009.08478},
  year         = {2020},
  url          = {https://arxiv.org/abs/2009.08478},
  eprinttype    = {arXiv},
  eprint       = {2009.08478},
  timestamp    = {Wed, 01 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2009-08478.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/KohlerCVJDGGHMM19,
  author       = {Sebastian K{\"{o}}hler and
                  Leigh Carmody and
                  Nicole A. Vasilevsky and
                  Julius O. B. Jacobsen and
                  Daniel Danis and
                  Jean{-}Philippe F. Gourdine and
                  Michael A. Gargano and
                  Nomi L. Harris and
                  Nicolas Matentzoglu and
                  Julie A. McMurry and
                  David Osumi{-}Sutherland and
                  Valentina Cipriani and
                  James P. Balhoff and
                  Tom Conlin and
                  Hannah Blau and
                  Gareth Baynam and
                  Richard Palmer and
                  Dylan Gratian and
                  Hugh J. S. Dawkins and
                  Michael Segal and
                  Anna C. Jansen and
                  Ahmed Muaz and
                  Willie H. Chang and
                  Jenna Bergerson and
                  Stanley J. F. Laulederkind and
                  Zafer Y{\"{u}}ksel and
                  Sergi Beltran and
                  Alexandra F. Freeman and
                  Panagiotis I. Sergouniotis and
                  Daniel Durkin and
                  Andrea L. Storm and
                  Marc Hanauer and
                  Michael Brudno and
                  Susan M. Bello and
                  Murat Sincan and
                  Kayli Rageth and
                  Matthew T. Wheeler and
                  Renske Oegema and
                  Halima Lourghi and
                  Maria G. Della Rocca and
                  Rachel Thompson and
                  Francisco Castellanos and
                  James Priest and
                  Charlotte Cunningham{-}Rundles and
                  Ayushi Hegde and
                  Ruth C. Lovering and
                  Catherine Hajek and
                  Annie Olry and
                  Luigi Notarangelo and
                  Morgan Similuk and
                  Xingmin Aaron Zhang and
                  David G{\'{o}}mez{-}Andr{\'{e}}s and
                  Hanns Lochm{\"{u}}ller and
                  H{\'{e}}l{\`{e}}ne Dollfus and
                  Sergio Rosenzweig and
                  Shruti Marwaha and
                  Ana Rath and
                  Kathleen Sullivan and
                  Cynthia L. Smith and
                  Joshua D. Milner and
                  Doroth{\'{e}}e Leroux and
                  Cornelius F. Boerkoel and
                  Amy Klion and
                  Melody C. Carter and
                  Tudor Groza and
                  Damian Smedley and
                  Melissa A. Haendel and
                  Chris Mungall and
                  Peter N. Robinson},
  title        = {Expansion of the Human Phenotype Ontology {(HPO)} knowledge base and
                  resources},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D1018--D1027},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1105},
  doi          = {10.1093/NAR/GKY1105},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KohlerCVJDGGHMM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bcb/VeltriLXOCHBZEF18,
  author       = {Daniel Veltri and
                  Zhiwen Li and
                  Sandhya Xirasagar and
                  Andrew J. Oler and
                  Xi Cheng and
                  Ke Huang and
                  Jason Barnett and
                  Lingwen Zhang and
                  Octavio Juarez Espinosa and
                  Yongjie Fan and
                  Morgan Similuk and
                  Magdalena Walkiewicz and
                  Celine Hong and
                  Joyce Johnson and
                  Joshua D. Milner},
  editor       = {Amarda Shehu and
                  Cathy H. Wu and
                  Christina Boucher and
                  Jing Li and
                  Hongfang Liu and
                  Mihai Pop},
  title        = {Balancing Confidentiality and Sharing of Genomic and Phenotypic Data
                  in a Clinical Research System},
  booktitle    = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
                  Computational Biology, and Health Informatics, {BCB} 2018, Washington,
                  DC, USA, August 29 - September 01, 2018},
  pages        = {533},
  publisher    = {{ACM}},
  year         = {2018},
  url          = {https://doi.org/10.1145/3233547.3233641},
  doi          = {10.1145/3233547.3233641},
  timestamp    = {Wed, 21 Nov 2018 12:44:25 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/VeltriLXOCHBZEF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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