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ORCIDBibTeX records: Lincoln Stein
@article{DBLP:journals/bioinformatics/MartinezHGSDXBCHBSH23,
author = {Teresa De Jesus Martinez and
Elliot A. Hershberg and
Emma Guo and
Garrett Stevens and
Colin M. Diesh and
Peter Xie and
Caroline Bridge and
Scott Cain and
Robin Haw and
Robert M. Buels and
Lincoln D. Stein and
Ian H. Holmes},
title = {JBrowse Jupyter: a Python interface to JBrowse 2},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad032},
doi = {10.1093/BIOINFORMATICS/BTAD032},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinezHGSDXBCHBSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AtienzaBSPWP23,
author = {Joshua Atienza and
Anjalee Benedict and
Lincoln D. Stein and
Kashif Pirzada and
Cheryl White and
Shraddha Pai},
title = {Fourteen quick tips for crowdsourcing geographically linked data for
public health advocacy},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {9},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011285},
doi = {10.1371/JOURNAL.PCBI.1011285},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/AtienzaBSPWP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WrightORWTJHS22,
author = {Adam J. Wright and
Marija Orlic{-}Milacic and
Karen Rothfels and
Joel Weiser and
Quang M. Trinh and
Bijay Jassal and
Robin Haw and
Lincoln D. Stein},
title = {Evaluating the predictive accuracy of curated biological pathways
in a public knowledgebase},
journal = {Database J. Biol. Databases Curation},
volume = {2022},
number = {2022},
year = {2022},
url = {https://doi.org/10.1093/database/baac009},
doi = {10.1093/DATABASE/BAAC009},
timestamp = {Mon, 30 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WrightORWTJHS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GillespieJSMRSG22,
author = {Marc Gillespie and
Bijay Jassal and
Ralf Stephan and
Marija Milacic and
Karen Rothfels and
Andrea Senff{-}Ribeiro and
Johannes Griss and
Cristoffer Sevilla and
Lisa Matthews and
Chuqiao Gong and
Chuan Deng and
Thawfeek M. Varusai and
Eliot Ragueneau and
Yusra Haider and
Bruce May and
Veronica Shamovsky and
Joel Weiser and
Timothy Brunson and
Nasim Sanati and
Liam Beckman and
Xiang Shao and
Antonio Fabregat and
Konstantinos Sidiropoulos and
Julieth Murillo and
Guilherme Viteri and
Justin Cook and
Solomon Shorser and
Gary D. Bader and
Emek Demir and
Chris Sander and
Robin Haw and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The reactome pathway knowledgebase 2022},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {687--692},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1028},
doi = {10.1093/NAR/GKAB1028},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GillespieJSMRSG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HershbergSDXMBS21,
author = {Elliot A. Hershberg and
Garrett Stevens and
Colin M. Diesh and
Peter Xie and
Teresa De Jesus Martinez and
Robert M. Buels and
Lincoln Stein and
Ian H. Holmes},
title = {JBrowseR: an {R} interface to the JBrowse 2 genome browser},
journal = {Bioinform.},
volume = {37},
number = {21},
pages = {3914--3915},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab459},
doi = {10.1093/BIOINFORMATICS/BTAB459},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HershbergSDXMBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNGOWP21,
author = {Marcela K. Tello{-}Ruiz and
Sushma Naithani and
Parul Gupta and
Andrew Olson and
Sharon Wei and
Justin Preece and
Yinping Jiao and
Bo Wang and
Kapeel Chougule and
Priyanka Garg and
Justin Elser and
Sunita Kumari and
Vivek Kumar and
Bruno Contreras{-}Moreira and
Guy Naamati and
Nancy George and
Justin Cook and
Dan M. Bolser and
Peter D'Eustachio and
Lincoln D. Stein and
Amit Gupta and
Weijia Xu and
Jennifer Regala and
Irene Papatheodorou and
Paul J. Kersey and
Paul Flicek and
Crispin Taylor and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2021: harnessing the power of comparative genomics and pathways
for plant research},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1452--D1463},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa979},
doi = {10.1093/NAR/GKAA979},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNGOWP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuenCDLHOPSSROH21,
author = {Denis Yuen and
Louise Cabansay and
Andrew G. Duncan and
Gary Luu and
Gregory Hogue and
Charles Overbeck and
Natalie Perez and
Walt Shands and
David Steinberg and
Chaz Reid and
Nneka Olunwa and
Richard Hansen and
Elizabeth Sheets and
Ash O'farrell and
Kim Cullion and
Brian D. O'Connor and
Benedict Paten and
Lincoln Stein},
title = {The Dockstore: enhancing a community platform for sharing reproducible
and accessible computational protocols},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Webserver-Issue},
pages = {624--632},
year = {2021},
url = {https://doi.org/10.1093/nar/gkab346},
doi = {10.1093/NAR/GKAB346},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuenCDLHOPSSROH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniGPDEGDK20,
author = {Sushma Naithani and
Parul Gupta and
Justin Preece and
Peter D'Eustachio and
Justin Elser and
Priyanka Garg and
Daemon A. Dikeman and
Jason Kiff and
Justin Cook and
Andrew Olson and
Sharon Wei and
Marcela K. Tello{-}Ruiz and
Antonio Fabregat Mundo and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Suhaib Mohammed and
Tiejun Cheng and
Evan Bolton and
Irene Papatheodorou and
Lincoln Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a knowledgebase and resource for comparative pathway
analysis},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D1093--D1103},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz996},
doi = {10.1093/NAR/GKZ996},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NaithaniGPDEGDK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JassalMVGLFSCGH20,
author = {Bijay Jassal and
Lisa Matthews and
Guilherme Viteri and
Chuqiao Gong and
Pascual Lorente and
Antonio Fabregat and
Konstantinos Sidiropoulos and
Justin Cook and
Marc Gillespie and
Robin Haw and
Fred Loney and
Bruce May and
Marija Milacic and
Karen Rothfels and
Cristoffer Sevilla and
Veronica Shamovsky and
Solomon Shorser and
Thawfeek M. Varusai and
Joel Weiser and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The reactome pathway knowledgebase},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D498--D503},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz1031},
doi = {10.1093/NAR/GKZ1031},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JassalMVGLFSCGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisACCCC0GGK20,
author = {Todd W. Harris and
Valerio Arnaboldi and
Scott Cain and
Juancarlos Chan and
Wen J. Chen and
Jae{-}Hyoung Cho and
Paul Davis and
Sibyl Gao and
Christian A. Grove and
Ranjana Kishore and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Paulo A. S. Nuin and
Michael Paulini and
Daniela Raciti and
Faye Rodgers and
Matthew Russell and
Gary Schindelman and
Kimberly Van Auken and
Qinghua Wang and
Gary Williams and
Adam Wright and
Karen Yook and
Kevin L. Howe and
Tim Schedl and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase: a modern Model Organism Information Resource},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D762--D767},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz920},
doi = {10.1093/NAR/GKZ920},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisACCCC0GGK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
author = {Esther Rheinbay and
Morten Muhlig Nielsen and
Federico Abascal and
Jeremiah Wala and
Ofer Shapira and
Grace Tiao and
Henrik Hornsh{\o}j and
Julian M. Hess and
Randi Istrup Juul and
Ziao Lin and
Lars Feuerbach and
Radhakrishnan Sabarinathan and
Tobias Madsen and
Jaegil Kim and
Loris Mularoni and
Shimin Shuai and
Andr{\'{e}}s Lanz{\'{o}}s and
Carl Herrmann and
Yosef E. Maruvka and
Ciyue Shen and
Samirkumar B. Amin and
Pratiti Bandopadhayay and
Johanna Bertl and
Keith A. Boroevich and
John Busanovich and
Joana Carlevaro{-}Fita and
Dimple Chakravarty and
Calvin Wing Yiu Chan and
David Craft and
Priyanka Dhingra and
Klev Diamanti and
Nuno A. Fonseca and
Abel Gonzalez{-}Perez and
Qianyun Guo and
Mark P. Hamilton and
Nicholas J. Haradhvala and
Chen Hong and
Keren Isaev and
Todd A. Johnson and
Malene Juul and
Andr{\'{e}} Kahles and
Abdullah Kahraman and
Youngwook Kim and
Jan Komorowski and
Kiran Kumar and
Sushant Kumar and
Donghoon Lee and
Kjong{-}Van Lehmann and
Yilong Li and
Eric Minwei Liu and
Lucas Lochovsky and
Keunchil Park and
Oriol Pich and
Nicola D. Roberts and
Gordon Saksena and
Steven E. Schumacher and
Nikos Sidiropoulos and
Lina Sieverling and
Nasa Sinnott{-}Armstrong and
Chip Stewart and
David Tamborero and
Jose M. C. Tubio and
Husen M. Umer and
Liis Uusk{\"{u}}la{-}Reimand and
Claes Wadelius and
Lina Wadi and
Xiaotong Yao and
Cheng{-}Zhong Zhang and
Jing Zhang and
James E. Haber and
Asger Hobolth and
Marcin Imielinski and
Manolis Kellis and
Michael S. Lawrence and
Christian von Mering and
Hidewaki Nakagawa and
Benjamin J. Raphael and
Mark A. Rubin and
Chris Sander and
Lincoln D. Stein and
Joshua M. Stuart and
Tatsuhiko Tsunoda and
David A. Wheeler and
Rory Johnson and
J{\"{u}}ri Reimand and
Mark Gerstein and
Ekta Khurana and
Peter J. Campbell and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Gary D. Bader and
Jonathan Barenboim and
Rameen Beroukhim and
S{\o}ren Brunak and
Ken Chen and
Jung Kyoon Choi and
Jordi Deu{-}Pons and
J. Lynn Fink and
Joan Frigola and
Carlo Gambacorti Passerini and
Dale W. Garsed and
Gad Getz and
Ivo Glynne Gut and
David Haan and
Arif Ozgun Harmanci and
Mohamed Helmy and
Ermin Hodzic and
Jos{\'{e}} M. G. Izarzugaza and
Jong K. Kim and
Jan O. Korbel and
Erik Larsson and
Shantao Li and
Xiaotong Li and
Shaoke Lou and
Kathleen Marchal and
I{\~{n}}igo Martincorena and
Alexander Mart{\'{\i}}nez{-}Fundichely and
Patrick D. McGillivray and
William Meyerson and
Ferran Mui{\~{n}}os and
Marta Paczkowska and
Kiejung Park and
Jakob Skou Pedersen and
Tirso Pons and
Sergio Pulido{-}Tamayo and
Iker Reyes{-}Salazar and
Matthew A. Reyna and
Carlota Rubio{-}Perez and
S{\"{u}}leyman Cenk Sahinalp and
Leonidas Salichos and
Mark Shackleton and
Raunak Shrestha and
Alfonso Valencia and
Miguel Vazquez and
Lieven P. C. Verbeke and
Jiayin Wang and
Jonathan Warrell and
Sebastian M. Waszak and
Joachim Weischenfeldt and
Guanming Wu and
Jun Yu and
Xuanping Zhang and
Yan Zhang and
Zhongming Zhao and
Lihua Zou and
Kadir C. Akdemir and
Eva G. Alvarez and
Adrian Baez{-}Ortega and
Paul C. Boutros and
David D. L. Bowtell and
Benedikt Brors and
Kathleen H. Burns and
Kin Chan and
Isidro Cort{\'{e}}s{-}Ciriano and
Ana Dueso{-}Barroso and
Andrew J. Dunford and
Paul A. Edwards and
Xavier Estivill and
Dariush Etemadmoghadam and
Milana Frenkel{-}Morgenstern and
Dmitry A. Gordenin and
Barbara Hutter and
David T. W. Jones and
Young Seok Ju and
Marat D. Kazanov and
Leszek J. Klimczak and
Youngil Koh and
Eunjung Alice Lee and
Jake June{-}Koo Lee and
Andy G. Lynch and
Geoff MacIntyre and
Florian Markowetz and
Matthew Meyerson and
Satoru Miyano and
Fabio C. P. Navarro and
Stephan Ossowski and
Peter J. Park and
John V. Pearson and
Montserrat Puiggr{\`{o}}s and
Karsten Rippe and
Steven A. Roberts and
Bernardo Rodriguez{-}Martin and
Ralph Scully and
David Torrents and
Izar Villasante and
Nicola Waddell and
Jeremiah A. Wala and
Lixing Yang and
Sung{-}Soo Yoon and
Jorge Zamora},
title = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
journal = {Nat.},
volume = {578},
number = {7793},
pages = {102--111},
year = {2020},
url = {https://doi.org/10.1038/s41586-020-1965-x},
doi = {10.1038/S41586-020-1965-X},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/GerstungJLDGRMR20,
author = {Moritz Gerstung and
Clemency Jolly and
Ignaty Leshchiner and
Stefan C. Dentro and
Santiago Gonzalez and
Thomas J. Mitchell and
Yulia Rubanova and
Pavana Anur and
Kaixian Yu and
Maxime Tarabichi and
Amit G. Deshwar and
Jeff Wintersinger and
Kortine Kleinheinz and
Ignacio V{\'{a}}zquez{-}Garc{\'{\i}}a and
Kerstin Haase and
Lara Jerman and
Subhajit Sengupta and
Geoff MacIntyre and
Salem Malikic and
Nilgun Donmez and
Dimitri G. Livitz and
Marek Cmero and
Jonas Demeulemeester and
Steven E. Schumacher and
Yu Fan and
Xiaotong Yao and
Juhee Lee and
Matthias Schlesner and
Paul C. Boutros and
David D. L. Bowtell and
Hongtu Zhu and
Gad Getz and
Marcin Imielinski and
Rameen Beroukhim and
S{\"{u}}leyman Cenk Sahinalp and
Yuan Ji and
Martin Peifer and
Florian Markowetz and
Ville Mustonen and
Ke Yuan and
Wenyi Wang and
Quaid D. Morris and
David J. Adams and
Peter J. Campbell and
Shaolong Cao and
Elizabeth L. Christie and
Yupeng Cun and
Kevin J. Dawson and
Ruben M. Drews and
Roland Eils and
Matthew Fittall and
Dale W. Garsed and
Gavin Ha and
Henry Lee{-}Six and
I{\~{n}}igo Martincorena and
Layla Oesper and
Myron Peto and
Benjamin J. Raphael and
Daniel T. Rosebrock and
Adriana Salcedo and
Ruian Shi and
Seung Jun Shin and
Oliver Spiro and
Lincoln D. Stein and
Shankar Vembu and
David A. Wheeler and
Tsun{-}Po Yang and
Paul T. Spellman and
David C. Wedge and
Peter Van Loo},
title = {The evolutionary history of 2,658 cancers},
journal = {Nat.},
volume = {578},
number = {7793},
pages = {122--128},
year = {2020},
url = {https://doi.org/10.1038/s41586-019-1907-7},
doi = {10.1038/S41586-019-1907-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/GerstungJLDGRMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/YaoBSSH20,
author = {Eric Yao and
Robert M. Buels and
Lincoln Stein and
Taner Z. Sen and
Ian H. Holmes},
title = {JBrowse Connect: {A} server {API} to connect JBrowse instances and
users},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {8},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007261},
doi = {10.1371/JOURNAL.PCBI.1007261},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/YaoBSSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ViteriMVGMCWSSF19,
author = {Guilherme Viteri and
Lisa Matthews and
Thawfeek M. Varusai and
Marc Gillespie and
Marija Milacic and
Justin Cook and
Joel Weiser and
Solomon Shorser and
Konstantinos Sidiropoulos and
Antonio Fabregat and
Robin Haw and
Guanming Wu and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome and {ORCID} - fine-grained credit attribution for community
curation},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz123},
year = {2019},
url = {https://doi.org/10.1093/database/baz123},
doi = {10.1093/DATABASE/BAZ123},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ViteriMVGMCWSSF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GendooDZRJLFCLI19,
author = {Deena M. A. Gendoo and
Robert E. Denroche and
Amy Zhang and
Nikolina Radulovich and
Gun Ho Jang and
Mathieu Lemire and
Sandra Fischer and
Dianne Chadwick and
Ilinca M. Lungu and
Emin Ibrahimov and
Ping{-}Jiang Cao and
Lincoln D. Stein and
Julie M. Wilson and
John M. S. Bartlett and
Ming{-}Sound Tsao and
Neesha Dhani and
David Hedley and
Steven Gallinger and
Benjamin Haibe{-}Kains},
title = {Whole genomes define concordance of matched primary, xenograft, and
organoid models of pancreas cancer},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {1},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1006596},
doi = {10.1371/JOURNAL.PCBI.1006596},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/GendooDZRJLFCLI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabregatSVMPSDH18,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Guilherme Viteri and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Peipei Ping and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome diagram viewer: data structures and strategies to boost performance},
journal = {Bioinform.},
volume = {34},
number = {7},
pages = {1208--1214},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx752},
doi = {10.1093/BIOINFORMATICS/BTX752},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabregatSVMPSDH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNSGCO18,
author = {Marcela K. Tello{-}Ruiz and
Sushma Naithani and
Joshua C. Stein and
Parul Gupta and
Michael Campbell and
Andrew Olson and
Sharon Wei and
Justin Preece and
Matthew J. Geniza and
Yinping Jiao and
Young Koung Lee and
Bo Wang and
Joseph Mulvaney and
Kapeel Chougule and
Justin Elser and
Noor Al{-}Bader and
Sunita Kumari and
James Thomason and
Vivek Kumar and
Daniel M. Bolser and
Guy Naamati and
Electra Tapanari and
Nuno A. Fonseca and
Laura Huerta and
Haider Iqbal and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Y. Amy Tang and
Antonio Fabregat and
Peter D'Eustachio and
Joel Weiser and
Lincoln D. Stein and
Robert Petryszak and
Irene Papatheodorou and
Paul J. Kersey and
Patti Lockhart and
Crispin Taylor and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2018: unifying comparative genomics and pathway resources
for plant research},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D1181--D1189},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1111},
doi = {10.1093/NAR/GKX1111},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNSGCO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FabregatJMSGGHJ18,
author = {Antonio Fabregat and
Steven Jupe and
Lisa Matthews and
Konstantinos Sidiropoulos and
Marc Gillespie and
Phani V. Garapati and
Robin Haw and
Bijay Jassal and
Florian Korninger and
Bruce May and
Marija Milacic and
Corina Duenas and
Karen Rothfels and
Cristoffer Sevilla and
Veronica Shamovsky and
Solomon Shorser and
Thawfeek M. Varusai and
Guilherme Viteri and
Joel Weiser and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The Reactome Pathway Knowledgebase},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D649--D655},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1132},
doi = {10.1093/NAR/GKX1132},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FabregatJMSGGHJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeHHACCCDGGKMN18,
author = {Raymond Y. N. Lee and
Kevin L. Howe and
Todd W. Harris and
Valerio Arnaboldi and
Scott Cain and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
Sibyl Gao and
Christian A. Grove and
Ranjana Kishore and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Paulo A. S. Nuin and
Michael Paulini and
Daniela Raciti and
Faye Rodgers and
Matthew Russell and
Gary Schindelman and
Mary Ann Tuli and
Kimberly Van Auken and
Qinghua Wang and
Gary Williams and
Adam Wright and
Karen Yook and
Matthew Berriman and
Paul J. Kersey and
Tim Schedl and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2017: molting into a new stage},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D869--D874},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx998},
doi = {10.1093/NAR/GKX998},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeHHACCCDGGKMN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FabregatKVSMPWS18,
author = {Antonio Fabregat and
Florian Korninger and
Guilherme Viteri and
Konstantinos Sidiropoulos and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Peipei Ping and
Guanming Wu and
Lincoln Stein and
Peter D'Eustachio and
Henning Hermjakob},
title = {Reactome graph database: Efficient access to complex pathway data},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {1},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005968},
doi = {10.1371/JOURNAL.PCBI.1005968},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FabregatKVSMPWS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SidiropoulosVSJ17,
author = {Konstantinos Sidiropoulos and
Guilherme Viteri and
Cristoffer Sevilla and
Steven Jupe and
Marissa Webber and
Marija Orlic{-}Milacic and
Bijay Jassal and
Bruce May and
Veronica Shamovsky and
Corina Duenas and
Karen Rothfels and
Lisa Matthews and
Heeyeon Song and
Lincoln Stein and
Robin Haw and
Peter D'Eustachio and
Peipei Ping and
Henning Hermjakob and
Antonio Fabregat},
title = {Reactome enhanced pathway visualization},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3461--3467},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx441},
doi = {10.1093/BIOINFORMATICS/BTX441},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SidiropoulosVSJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FabregatSVFMADS17,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Guilherme Viteri and
Oscar Forner{-}Martinez and
Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and
Vicente Arnau and
Peter D'Eustachio and
Lincoln Stein and
Henning Hermjakob},
title = {Reactome pathway analysis: a high-performance in-memory approach},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {142:1--142:9},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1559-2},
doi = {10.1186/S12859-017-1559-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FabregatSVFMADS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniPDGADWF17,
author = {Sushma Naithani and
Justin Preece and
Peter D'Eustachio and
Parul Gupta and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Guanming Wu and
Antonio Fabregat and
Justin Elser and
Joel Weiser and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Robert Petryszak and
Lincoln D. Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a resource for plant pathways and comparative analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1029--D1039},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw932},
doi = {10.1093/NAR/GKW932},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NaithaniPDGADWF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/OConnorYCDLPPSF17,
author = {Brian D. O'Connor and
Denis Yuen and
Vincent Chung and
Andrew G. Duncan and
Xiangkun Liu and
Janice Patricia and
Benedict Paten and
Lincoln Stein and
Vincent Ferretti},
title = {The Dockstore: enabling modular, community-focused sharing of Docker-based
genomics tools and workflows},
journal = {F1000Research},
volume = {6},
pages = {52},
year = {2017},
url = {https://doi.org/10.12688/f1000research.10137.1},
doi = {10.12688/F1000RESEARCH.10137.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/OConnorYCDLPPSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FabregatSGGHHJJ16,
author = {Antonio Fabregat and
Konstantinos Sidiropoulos and
Phani V. Garapati and
Marc Gillespie and
Kerstin Hausmann and
Robin Haw and
Bijay Jassal and
Steven Jupe and
Florian Korninger and
Sheldon J. McKay and
Lisa Matthews and
Bruce May and
Marija Milacic and
Karen Rothfels and
Veronica Shamovsky and
Marissa Webber and
Joel Weiser and
Mark Williams and
Guanming Wu and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The Reactome pathway Knowledgebase},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {481--487},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1351},
doi = {10.1093/NAR/GKV1351},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FabregatSGGHHJJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoweBCCCDDDGGHK16,
author = {Kevin L. Howe and
Bruce J. Bolt and
Scott Cain and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
James Done and
Thomas A. Down and
Sibyl Gao and
Christian A. Grove and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Jane Lomax and
Yuling Li and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Paulo A. S. Nuin and
Michael Paulini and
Daniela Raciti and
Gary Schindelman and
Eleanor Stanley and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Adam Wright and
Karen Yook and
Matthew Berriman and
Paul J. Kersey and
Tim Schedl and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2016: expanding to enable helminth genomic research},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {774--780},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1217},
doi = {10.1093/NAR/GKV1217},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoweBCCCDDDGGHK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizSWPON16,
author = {Marcela K. Tello{-}Ruiz and
Joshua C. Stein and
Sharon Wei and
Justin Preece and
Andrew Olson and
Sushma Naithani and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Yinping Jiao and
Joseph Mulvaney and
Sunita Kumari and
Kapeel Chougule and
Justin Elser and
Bo Wang and
James Thomason and
Daniel M. Bolser and
Arnaud Kerhornou and
Brandon Walts and
Nuno A. Fonseca and
Laura Huerta and
Maria Keays and
Y. Amy Tang and
Helen E. Parkinson and
Antonio Fabregat and
Sheldon J. McKay and
Joel Weiser and
Peter D'Eustachio and
Lincoln Stein and
Robert Petryszak and
Paul J. Kersey and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2016: comparative plant genomics and pathway resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1133--1140},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1179},
doi = {10.1093/NAR/GKV1179},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizSWPON16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/WangWLMS15,
author = {Liya Wang and
Doreen Ware and
Carol Lushbough and
Nirav C. Merchant and
Lincoln Stein},
title = {A genome-wide association study platform built on iPlant cyber-infrastructure},
journal = {Concurr. Comput. Pract. Exp.},
volume = {27},
number = {2},
pages = {420--432},
year = {2015},
url = {https://doi.org/10.1002/cpe.3236},
doi = {10.1002/CPE.3236},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/WangWLMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/SteinKCGK15,
author = {Lincoln D. Stein and
Bartha M. Knoppers and
Peter Campbell and
Gad Getz and
Jan O. Korbel},
title = {Data analysis: Create a cloud commons},
journal = {Nat.},
volume = {523},
number = {7559},
pages = {149--151},
year = {2015},
url = {https://doi.org/10.1038/523149a},
doi = {10.1038/523149A},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/SteinKCGK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaoVDSM14,
author = {Wei Jiao and
Shankar Vembu and
Amit G. Deshwar and
Lincoln Stein and
Quaid Morris},
title = {Inferring clonal evolution of tumors from single nucleotide somatic
mutations},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {35},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-35},
doi = {10.1186/1471-2105-15-35},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaoVDSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CroftMHMWWCGGKJJMMPRSSWBHSD14,
author = {David Croft and
Antonio Fabregat Mundo and
Robin Haw and
Marija Milacic and
Joel Weiser and
Guanming Wu and
Michael Caudy and
Phani V. Garapati and
Marc Gillespie and
Maulik R. Kamdar and
Bijay Jassal and
Steven Jupe and
Lisa Matthews and
Bruce May and
Stanislav Palatnik and
Karen Rothfels and
Veronica Shamovsky and
Heeyeon Song and
Mark Williams and
Ewan Birney and
Henning Hermjakob and
Lincoln Stein and
Peter D'Eustachio},
title = {The Reactome pathway knowledgebase},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {472--477},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1102},
doi = {10.1093/NAR/GKT1102},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CroftMHMWWCGGKJJMMPRSSWBHSD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisBBCCCDDGHKLLMNOPRSTAWWWWYSHBKSSS14,
author = {Todd W. Harris and
Joachim Baran and
Tamberlyn Bieri and
Abigail Cabunoc and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
James Done and
Christian A. Grove and
Kevin L. Howe and
Ranjana Kishore and
Raymond Y. N. Lee and
Yuling Li and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Michael Paulini and
Daniela Raciti and
Gary Schindelman and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
J. D. Wong and
Karen Yook and
Tim Schedl and
Jonathan Hodgkin and
Matthew Berriman and
Paul J. Kersey and
John Spieth and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2014: new views of curated biology},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {789--793},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1063},
doi = {10.1093/NAR/GKT1063},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisBBCCCDDGHKLLMNOPRSTAWWWWYSHBKSSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14,
author = {Marcela K. Monaco and
Joshua C. Stein and
Sushma Naithani and
Sharon Wei and
Palitha Dharmawardhana and
Sunita Kumari and
Vindhya Amarasinghe and
Ken Youens{-}Clark and
James Thomason and
Justin Preece and
Shiran Pasternak and
Andrew Olson and
Yinping Jiao and
Zhenyuan Lu and
Daniel M. Bolser and
Arnaud Kerhornou and
Daniel M. Staines and
Brandon Walts and
Guanming Wu and
Peter D'Eustachio and
Robin Haw and
David Croft and
Paul J. Kersey and
Lincoln Stein and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2013: comparative plant genomics resources},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1193--1199},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1110},
doi = {10.1093/NAR/GKT1110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DeshwarVYJSM14,
author = {Amit G. Deshwar and
Shankar Vembu and
Christina K. Yung and
Gun Ho Jang and
Lincoln Stein and
Quaid Morris},
title = {Reconstructing subclonal composition and evolution from whole genome
sequencing of tumors},
journal = {CoRR},
volume = {abs/1406.7250},
year = {2014},
url = {http://arxiv.org/abs/1406.7250},
eprinttype = {arXiv},
eprint = {1406.7250},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/DeshwarVYJSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/WuDDHS14,
author = {Guanming Wu and
Eric T. Dawson and
Adrian Duong and
Robin Haw and
Lincoln Stein},
title = {ReactomeFIViz: the Reactome {FI} Cytoscape app for pathway and network-based
data analysis},
journal = {F1000Research},
volume = {3},
pages = {146},
year = {2014},
url = {https://doi.org/10.12688/f1000research.4431.1},
doi = {10.12688/F1000RESEARCH.4431.1},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/WuDDHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Stein13,
author = {Lincoln D. Stein},
title = {Using GBrowse 2.0 to visualize and share next-generation sequence
data},
journal = {Briefings Bioinform.},
volume = {14},
number = {2},
pages = {162--171},
year = {2013},
url = {https://doi.org/10.1093/bib/bbt001},
doi = {10.1093/BIB/BBT001},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Stein13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YookHBCCCDCDFGGHKKLLMNNOPRRSSSTAWWWHBDKSSS12,
author = {Karen Yook and
Todd W. Harris and
Tamberlyn Bieri and
Abigail Cabunoc and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
Norie De La Cruz and
Adrian Duong and
Ruihua Fang and
Uma Ganesan and
Christian A. Grove and
Kevin L. Howe and
Snehalata Kadam and
Ranjana Kishore and
Raymond Y. N. Lee and
Yuling Li and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Bill Nash and
Philip Ozersky and
Michael Paulini and
Daniela Raciti and
Arun Rangarajan and
Gary Schindelman and
Xiaoqi Shi and
Erich M. Schwarz and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Jonathan Hodgkin and
Matthew Berriman and
Richard Durbin and
Paul J. Kersey and
John Spieth and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2012: more genomes, more data, new website},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {735--741},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr954},
doi = {10.1093/NAR/GKR954},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YookHBCCCDCDFGGHKKLLMNNOPRRSSSTAWWWHBDKSSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ContrinoSBCHLRKSCKLSWPRZLSM12,
author = {Sergio Contrino and
Richard N. Smith and
Daniela Butano and
Adrian Carr and
Fengyuan Hu and
Rachel Lyne and
Kim Rutherford and
Alex Kalderimis and
Julie M. Sullivan and
Seth Carbon and
Ellen T. Kephart and
Paul Lloyd and
E. O. Stinson and
Nicole L. Washington and
Marc D. Perry and
Peter Ruzanov and
Zheng Zha and
Suzanna E. Lewis and
Lincoln D. Stein and
Gos Micklem},
title = {modMine: flexible access to modENCODE data},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1082--1088},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr921},
doi = {10.1093/NAR/GKR921},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ContrinoSBCHLRKSCKLSWPRZLSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1210-3384,
author = {Wei Jiao and
Shankar Vembu and
Amit G. Deshwar and
Lincoln Stein and
Quaid Morris},
title = {Modeling the Clonal Evolution of Cancer from Next Generation Sequencing
Data},
journal = {CoRR},
volume = {abs/1210.3384},
year = {2012},
url = {http://arxiv.org/abs/1210.3384},
eprinttype = {arXiv},
eprint = {1210.3384},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1210-3384.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HawCYNDHS11,
author = {Robin Haw and
David Croft and
Christina K. Yung and
Nelson Ndegwa and
Peter D'Eustachio and
Henning Hermjakob and
Lincoln D. Stein},
title = {The Reactome BioMart},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar031},
doi = {10.1093/DATABASE/BAR031},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HawCYNDHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WashingtonSPRCSZLCLKMMSL11,
author = {Nicole L. Washington and
E. O. Stinson and
Marc D. Perry and
Peter Ruzanov and
Sergio Contrino and
Richard N. Smith and
Zheng Zha and
Rachel Lyne and
Adrian Carr and
Paul Lloyd and
Ellen T. Kephart and
Sheldon J. McKay and
Gos Micklem and
Lincoln D. Stein and
Suzanna E. Lewis},
title = {The modENCODE Data Coordination Center: lessons in harvesting comprehensive
experimental details},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar023},
doi = {10.1093/DATABASE/BAR023},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WashingtonSPRCSZLCLKMMSL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FengGS11,
author = {Xin Feng and
Robert Grossman and
Lincoln Stein},
title = {PeakRanger: {A} cloud-enabled peak caller for ChIP-seq data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {139},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-139},
doi = {10.1186/1471-2105-12-139},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FengGS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11,
author = {David Croft and
Gavin O'Kelly and
Guanming Wu and
Robin Haw and
Marc Gillespie and
Lisa Matthews and
Michael Caudy and
Phani V. Garapati and
Gopal Gopinath and
Bijay Jassal and
Steven Jupe and
Irina Kalatskaya and
Shahana Mahajan and
Bruce May and
Nelson Ndegwa and
Esther Schmidt and
Veronica Shamovsky and
Christina K. Yung and
Ewan Birney and
Henning Hermjakob and
Peter D'Eustachio and
Lincoln Stein},
title = {Reactome: a database of reactions, pathways and biological processes},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {691--697},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1018},
doi = {10.1093/NAR/GKQ1018},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JassalJCBSHD10,
author = {Bijay Jassal and
Steven Jupe and
Michael Caudy and
Ewan Birney and
Lincoln Stein and
Henning Hermjakob and
Peter D'Eustachio},
title = {The systematic annotation of the three main {GPCR} families in Reactome},
journal = {Database J. Biol. Databases Curation},
volume = {2010},
year = {2010},
url = {https://doi.org/10.1093/database/baq018},
doi = {10.1093/DATABASE/BAQ018},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JassalJCBSHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangS10,
author = {Liya Wang and
Lincoln D. Stein},
title = {Localizing triplet periodicity in {DNA} and cDNA sequences},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {550},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-550},
doi = {10.1186/1471-2105-11-550},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisABBCCCDDFFHKLMNOPRRSSTAWWWYDSSS10,
author = {Todd W. Harris and
Igor Antoshechkin and
Tamberlyn Bieri and
Darin Blasiar and
Juancarlos Chan and
Wen J. Chen and
Norie De La Cruz and
Paul Davis and
Margaret J. Duesbury and
Ruihua Fang and
Jolene Fernandes and
Michael Han and
Ranjana Kishore and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Arun Rangarajan and
Anthony Rogers and
Gary Schindelman and
Erich M. Schwarz and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Karen Yook and
Richard Durbin and
Lincoln D. Stein and
John Spieth and
Paul W. Sternberg},
title = {WormBase: a comprehensive resource for nematode research},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {463--467},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp952},
doi = {10.1093/NAR/GKP952},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisABBCCCDDFFHKLMNOPRRSSTAWWWYDSSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NiPYYJTTRSWAWSM09,
author = {Junjian Ni and
Anuradha Pujar and
Ken Youens{-}Clark and
Immanuel Yap and
Pankaj Jaiswal and
Isaak Y. Tecle and
Chih{-}Wei Tung and
Liya Ren and
William Spooner and
Xuehong Wei and
Shuly Avraham and
Doreen Ware and
Lincoln Stein and
Susan McCouch},
title = {Gramene {QTL} database: development, content and applications},
journal = {Database J. Biol. Databases Curation},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1093/database/bap005},
doi = {10.1093/DATABASE/BAP005},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NiPYYJTTRSWAWSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Youens-ClarkFYSW09,
author = {Ken Youens{-}Clark and
Benjamin Faga and
Immanuel Yap and
Lincoln Stein and
Doreen Ware},
title = {CMap 1.01: a comparative mapping application for the Internet},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3040--3042},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp458},
doi = {10.1093/BIOINFORMATICS/BTP458},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Youens-ClarkFYSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MatthewsGGCCBGHHJKLMMSVWBSD09,
author = {Lisa Matthews and
Gopal Gopinath and
Marc Gillespie and
Michael Caudy and
David Croft and
Bernard de Bono and
Phani V. Garapati and
Jill Hemish and
Henning Hermjakob and
Bijay Jassal and
Alexander Kanapin and
Suzanna Lewis and
Shahana Mahajan and
Bruce May and
Esther Schmidt and
Imre Vastrik and
Guanming Wu and
Ewan Birney and
Lincoln Stein and
Peter D'Eustachio},
title = {Reactome knowledgebase of human biological pathways and processes},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {619--622},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn863},
doi = {10.1093/NAR/GKN863},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MatthewsGGCCBGHHJKLMMSVWBSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoghlanFMFHBCS08,
author = {Avril Coghlan and
Tristan J. Fiedler and
Sheldon J. McKay and
Paul Flicek and
Todd W. Harris and
Darin Blasiar and
Lincoln D. Stein},
title = {nGASP - the nematode genome annotation assessment project},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-549},
doi = {10.1186/1471-2105-9-549},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoghlanFMFHBCS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AvrahamTIJKMPRRSSSSVZW08,
author = {Shulamit Avraham and
Chih{-}Wei Tung and
Katica Ilic and
Pankaj Jaiswal and
Elizabeth A. Kellogg and
Susan McCouch and
Anuradha Pujar and
Leonore Reiser and
Seung Yon Rhee and
Martin M. Sachs and
Mary L. Schaeffer and
Lincoln Stein and
Peter F. Stevens and
Leszek Vincent and
Felipe Zapata and
Doreen Ware},
title = {The Plant Ontology Database: a community resource for plant structure
and developmental stages controlled vocabulary and annotations},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {449--454},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm908},
doi = {10.1093/NAR/GKM908},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AvrahamTIJKMPRRSSSSVZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RogersABBBCCCDFFHHKLMMNOPSSSTAWWWYDSSS08,
author = {Anthony Rogers and
Igor Antoshechkin and
Tamberlyn Bieri and
Darin Blasiar and
Carol Bastiani and
Payan Canaran and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
Jolene Fernandes and
Tristan J. Fiedler and
Michael Han and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Sheldon J. McKay and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Gary Schindelman and
Erich M. Schwarz and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Karen Yook and
Richard Durbin and
Lincoln D. Stein and
John Spieth and
Paul W. Sternberg},
title = {WormBase 2007},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {612--617},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm975},
doi = {10.1093/NAR/GKM975},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RogersABBBCCCDFFHHKLMMNOPSSSTAWWWYDSSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchmidtRRMHGMMS08,
author = {Carl J. Schmidt and
Michael Romanov and
Oliver Ryder and
Vincent J. Magrini and
Matthew T. Hickenbotham and
Jarret Glasscock and
Sean McGrath and
Elaine R. Mardis and
Lincoln D. Stein},
title = {\emph{Gallus} GBrowse: a unified genomic database for the chicken},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {719--723},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm783},
doi = {10.1093/NAR/GKM783},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchmidtRRMHGMMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiangJHABCHMNPRRSTTTWYYWS08,
author = {Chengzhi Liang and
Pankaj Jaiswal and
Claire Hebbard and
Shuly Avraham and
Edward S. Buckler and
Terry M. Casstevens and
Bonnie L. Hurwitz and
Susan McCouch and
Junjian Ni and
Anuradha Pujar and
Dean Ravenscroft and
Liya Ren and
William Spooner and
Isaak Y. Tecle and
Jim Thomason and
Chih{-}Wei Tung and
Xuehong Wei and
Immanuel Yap and
Ken Youens{-}Clark and
Doreen Ware and
Lincoln Stein},
title = {Gramene: a growing plant comparative genomics resource},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {947--953},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm968},
doi = {10.1093/NAR/GKM968},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiangJHABCHMNPRRSTTTWYYWS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CanaranBGSSZW08,
author = {Payan Canaran and
Edward S. Buckler and
Jeffrey Glaubitz and
Lincoln Stein and
Qi Sun and
Wei Zhao and
Doreen Ware},
title = {Panzea: an update on new content and features},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {1041--1043},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm1022},
doi = {10.1093/NAR/GKM1022},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CanaranBGSSZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BonoVDSGCGJLMWBS07,
author = {Bernard de Bono and
Imre Vastrik and
Peter D'Eustachio and
Esther Schmidt and
Gopal Gopinath and
David Croft and
Marc Gillespie and
Bijay Jassal and
Suzanna Lewis and
Lisa Matthews and
Guanming Wu and
Ewan Birney and
Lincoln Stein},
title = {Reactome: An integrated expert model of human molecular processes
and access toolkit},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {3},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-84},
doi = {10.2390/BIECOLL-JIB-2007-84},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/BonoVDSGCGJLMWBS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GirardFHCAHSSC07,
author = {Lisa R. Girard and
Tristan J. Fiedler and
Todd W. Harris and
Felicia Carvalho and
Igor Antoshechkin and
Michael Han and
Paul W. Sternberg and
Lincoln D. Stein and
Martin Chalfie},
title = {WormBook: the online review of \emph{Caenorhabditis elegans} biology},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {472--475},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl894},
doi = {10.1093/NAR/GKL894},
timestamp = {Wed, 02 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GirardFHCAHSSC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BieriBOABCCCCDFGHHKLMMNPRRSSSTAWWWDSSS07,
author = {Tamberlyn Bieri and
Darin Blasiar and
Philip Ozersky and
Igor Antoshechkin and
Carol Bastiani and
Payan Canaran and
Juancarlos Chan and
Nansheng Chen and
Wen J. Chen and
Paul Davis and
Tristan J. Fiedler and
Lisa R. Girard and
Michael Han and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Sheldon J. McKay and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Andrei Petcherski and
Arun Rangarajan and
Anthony Rogers and
Gary Schindelman and
Erich M. Schwarz and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Richard Durbin and
Lincoln D. Stein and
Paul W. Sternberg and
John Spieth},
title = {WormBase: new content and better access},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {506--510},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl818},
doi = {10.1093/NAR/GKL818},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BieriBOABCCCCDFGHHKLMMNPRRSSSTAWWWDSSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CanaranSW06,
author = {Payan Canaran and
Lincoln Stein and
Doreen Ware},
title = {Look-Align: an interactive web-based multiple sequence alignment viewer
with polymorphism analysis support},
journal = {Bioinform.},
volume = {22},
number = {7},
pages = {885--886},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl028},
doi = {10.1093/BIOINFORMATICS/BTL028},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CanaranSW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchwarzABBBCCCCDFGHKKLLMNOPRSTAWDSSS06,
author = {Erich M. Schwarz and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Payan Canaran and
Juancarlos Chan and
Nansheng Chen and
Wen J. Chen and
Paul Davis and
Tristan J. Fiedler and
Lisa R. Girard and
Todd W. Harris and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Richard Durbin and
John Spieth and
Lincoln D. Stein and
Paul W. Sternberg},
title = {WormBase: better software, richer content},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {475--478},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj061},
doi = {10.1093/NAR/GKJ061},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchwarzABBBCCCCDFGHKKLLMNOPRSTAWDSSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JaiswalNYWSYRLZRFCFHASCBSM06,
author = {Pankaj Jaiswal and
Junjian Ni and
Immanuel Yap and
Doreen Ware and
William Spooner and
Ken Youens{-}Clark and
Liya Ren and
Chengzhi Liang and
Wei Zhao and
Kiran Ratnapu and
Benjamin Faga and
Payan Canaran and
Molly Fogleman and
Claire Hebbard and
Shuly Avraham and
Steven Schmidt and
Terry M. Casstevens and
Edward S. Buckler and
Lincoln Stein and
Susan McCouch},
title = {Gramene: a bird's eye view of cereal genomes},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {717--723},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj154},
doi = {10.1093/NAR/GKJ154},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JaiswalNYWSYRLZRFCFHASCBSM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhaoCJFGBDGGHKMSW06,
author = {Wei Zhao and
Payan Canaran and
Rebecca Jurkuta and
Theresa Fulton and
Jeffrey Glaubitz and
Edward S. Buckler and
John Doebley and
Brandon S. Gaut and
Major Goodman and
Jim Holland and
Stephen Kresovich and
Michael D. McMullen and
Lincoln Stein and
Doreen Ware},
title = {Panzea: a database and resource for molecular and functional diversity
in the maize genome},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {752--757},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj011},
doi = {10.1093/NAR/GKJ011},
timestamp = {Thu, 14 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhaoCJFGBDGGHKMSW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/SchmidtBCBDGGJLMSVW06,
author = {Esther Schmidt and
Ewan Birney and
David Croft and
Bernard de Bono and
Peter D'Eustachio and
Marc Gillespie and
Gopal Gopinath and
Bijay Jassal and
Suzanna Lewis and
Lisa Matthews and
Lincoln Stein and
Imre Vastrik and
Guanming Wu},
editor = {Robert Meersman and
Zahir Tari and
Pilar Herrero},
title = {Reactome - {A} Knowledgebase of Biological Pathways},
booktitle = {On the Move to Meaningful Internet Systems 2006: {OTM} 2006 Workshops,
{OTM} Confederated International Workshops and Posters, AWeSOMe, CAMS,
COMINF, IS, KSinBIT, MIOS-CIAO, MONET, OnToContent, ORM, PerSys, {OTM}
Academy Doctoral Consortium, RDDS, SWWS, and SeBGIS 2006, Montpellier,
France, October 29 - November 3, 2006. Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {4277},
pages = {710--719},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11915034\_95},
doi = {10.1007/11915034\_95},
timestamp = {Thu, 14 Oct 2021 10:28:26 +0200},
biburl = {https://dblp.org/rec/conf/otm/SchmidtBCBDGGJLMSVW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanSB05,
author = {Xiaokang Pan and
Lincoln Stein and
Volker Brendel},
title = {SynBrowse: a synteny browser for comparative sequence analysis},
journal = {Bioinform.},
volume = {21},
number = {17},
pages = {3461--3468},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti555},
doi = {10.1093/BIOINFORMATICS/BTI555},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenHABBBBCCCCCDKKLLMNPOPRSSAWDSSS05,
author = {Nansheng Chen and
Todd W. Harris and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Keith Bradnam and
Payan Canaran and
Juancarlos Chan and
Chao{-}Kung Chen and
Wen J. Chen and
Fiona Cunningham and
Paul Davis and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Shraddha Pai and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
Aniko Sabo and
Erich M. Schwarz and
Kimberly Van Auken and
Qinghua Wang and
Richard Durbin and
John Spieth and
Paul W. Sternberg and
Lincoln D. Stein},
title = {WormBase: a comprehensive data resource for \emph{Caenorhabditis}
biology and genomics},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {383--389},
year = {2005},
url = {https://doi.org/10.1093/nar/gki066},
doi = {10.1093/NAR/GKI066},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenHABBBBCCCCCDKKLLMNPOPRSSAWDSSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Joshi-TopeGVDSBJGWMLBS05,
author = {G. Joshi{-}Tope and
Marc Gillespie and
Imre Vastrik and
Peter D'Eustachio and
Esther Schmidt and
Bernard de Bono and
Bijay Jassal and
Gopal R. Gopinath and
G. R. Wu and
Lisa Matthews and
Suzanna Lewis and
Ewan Birney and
Lincoln Stein},
title = {Reactome: a knowledgebase of biological pathways},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {428--432},
year = {2005},
url = {https://doi.org/10.1093/nar/gki072},
doi = {10.1093/NAR/GKI072},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Joshi-TopeGVDSBJGWMLBS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisCCTABBBBCCCDKKLLMNOPRSSAWDSSS04,
author = {Todd W. Harris and
Nansheng Chen and
Fiona Cunningham and
Marcela K. Tello{-}Ruiz and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Keith Bradnam and
Juancarlos Chan and
Chao{-}Kung Chen and
Wen J. Chen and
Paul Davis and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
Aniko Sabo and
Erich M. Schwarz and
Kimberly Van Auken and
Qinghua Wang and
Richard Durbin and
John Spieth and
Paul W. Sternberg and
Lincoln D. Stein},
title = {WormBase: a multi-species resource for nematode biology and genomics},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {411--417},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh066},
doi = {10.1093/NAR/GKH066},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisCCTABBBBCCCDKKLLMNOPRSSAWDSSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/MaherTSW04,
author = {Christopher Maher and
Marja Timmermans and
Lincoln Stein and
Doreen Ware},
title = {Identifying MicroRNAs in Plant Genomes},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {718--723},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332558},
doi = {10.1109/CSB.2004.1332558},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/MaherTSW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/LordBWSGHGS04,
author = {Phillip W. Lord and
Sean Bechhofer and
Mark D. Wilkinson and
Gary S. Schiltz and
Damian Gessler and
Duncan Hull and
Carole A. Goble and
Lincoln Stein},
editor = {Sheila A. McIlraith and
Dimitris Plexousakis and
Frank van Harmelen},
title = {Applying Semantic Web Services to Bioinformatics: Experiences Gained,
Lessons Learnt},
booktitle = {The Semantic Web - {ISWC} 2004: Third International Semantic Web Conference,Hiroshima,
Japan, November 7-11, 2004. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3298},
pages = {350--364},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30475-3\_25},
doi = {10.1007/978-3-540-30475-3\_25},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/LordBWSGHGS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ThorissonS03,
author = {Gudmundur A. Thorisson and
Lincoln Stein},
title = {The {SNP} Consortium website: past, present and future},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {124--127},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg052},
doi = {10.1093/NAR/GKG052},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ThorissonS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisLSBLCBKCKCMPTDBRCSSDS03,
author = {Todd W. Harris and
Raymond Y. N. Lee and
Erich M. Schwarz and
Keith Bradnam and
Daniel Lawson and
Wen J. Chen and
Darin Blasiar and
Eimear Kenny and
Fiona Cunningham and
Ranjana Kishore and
Juancarlos Chan and
Hans{-}Michael M{\"{u}}ller and
Andrei Petcherski and
Gudmundur A. Thorisson and
Allen Day and
Tamberlyn Bieri and
Anthony Rogers and
Chao{-}Kung Chen and
John Spieth and
Paul W. Sternberg and
Richard Durbin and
Lincoln D. Stein},
title = {WormBase: a cross-species database for comparative genomics},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {133--137},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg053},
doi = {10.1093/NAR/GKG053},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisLSBLCBKCKCMPTDBRCSSDS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WareJNPCCTSZCMS03,
author = {Doreen Ware and
Pankaj Jaiswal and
Junjian Ni and
Xiaokang Pan and
Kuan Y. Chang and
Kenneth Clark and
Leonid Teytelman and
Steven Schmidt and
Wei Zhao and
Samuel Cartinhour and
Susan McCouch and
Lincoln Stein},
title = {Gramene: a resource for comparative grass genomics},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {103--105},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.103},
doi = {10.1093/NAR/30.1.103},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WareJNPCCTSZCMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DowellJDES01,
author = {Robin D. Dowell and
Rodney M. Jokerst and
Allen Day and
Sean R. Eddy and
Lincoln Stein},
title = {The Distributed Annotation System},
journal = {{BMC} Bioinform.},
volume = {2},
pages = {7},
year = {2001},
url = {https://doi.org/10.1186/1471-2105-2-7},
doi = {10.1186/1471-2105-2-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DowellJDES01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SteinSDTS01,
author = {Lincoln Stein and
Paul W. Sternberg and
Richard Durbin and
Jean Thierry{-}Mieg and
John Spieth},
title = {WormBase: network access to the genome and biology of Caenorhabditis
elegans},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {82--86},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.82},
doi = {10.1093/NAR/29.1.82},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SteinSDTS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0097332,
author = {Lincoln Stein and
Doug MacEachern},
title = {Writing Apache modules with Perl and {C} - the Apache {API} and mod
Perl},
publisher = {O'Reilly},
year = {1999},
isbn = {978-1-56592-567-0},
timestamp = {Wed, 20 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0097332.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cse/SteinT99,
author = {Lincoln D. Stein and
Jean Thierry{-}Mieg},
title = {AceDB: a genome database management system},
journal = {Comput. Sci. Eng.},
volume = {1},
number = {3},
pages = {44--52},
year = {1999},
url = {https://doi.org/10.1109/5992.764215},
doi = {10.1109/5992.764215},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cse/SteinT99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/usenix/Stein99,
author = {Lincoln Stein},
title = {{SBOX:} Put {CGI} Scripts in a Box},
booktitle = {Proceedings of the 1999 {USENIX} Annual Technical Conference, June
6-11, 1999, Monterey, California, {USA}},
pages = {145--155},
publisher = {{USENIX}},
year = {1999},
url = {http://www.usenix.org/events/usenix99/full\_papers/stein/stein.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/usenix/Stein99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoodmanRSS98,
author = {Nathan Goodman and
Steve Rozen and
Lincoln Stein and
A. G. Smith},
title = {The LabBase system for data management in large scale biology research
laboratories},
journal = {Bioinform.},
volume = {14},
number = {7},
pages = {562--574},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.7.562},
doi = {10.1093/BIOINFORMATICS/14.7.562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoodmanRSS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GoodmanRS98,
author = {Nathan Goodman and
Steve Rozen and
Lincoln Stein},
editor = {Janice I. Glasgow and
Timothy G. Littlejohn and
Fran{\c{c}}ois Major and
Richard H. Lathrop and
David Sankoff and
Christoph W. Sensen},
title = {The LabFlow System for Workflow Management in Large Scale Biology
Research Laboratories},
booktitle = {Proceedings of the 6th International Conference on Intelligent Systems
for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
Canada, June 28 - July 1, 1998},
pages = {69--77},
publisher = {{AAAI}},
year = {1998},
url = {http://www.aaai.org/Library/ISMB/1998/ismb98-009.php},
timestamp = {Thu, 27 Jun 2019 11:28:34 +0200},
biburl = {https://dblp.org/rec/conf/ismb/GoodmanRS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SlonimKSL97,
author = {Donna K. Slonim and
Leonid Kruglyak and
Lincoln Stein and
Eric S. Lander},
title = {Building Human Genome Maps with Radiation Hybrids},
journal = {J. Comput. Biol.},
volume = {4},
number = {4},
pages = {487--504},
year = {1997},
url = {https://doi.org/10.1089/cmb.1997.4.487},
doi = {10.1089/CMB.1997.4.487},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SlonimKSL97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/wwwj/Stein97,
author = {Lincoln Stein},
title = {Exploring {CGI} with Perl},
journal = {World Wide Web J.},
volume = {2},
pages = {135--150},
year = {1997},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/wwwj/Stein97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/wwwj/Stein97a,
author = {Lincoln D. Stein},
title = {The electronic medical record: promises and threats},
journal = {World Wide Web J.},
volume = {2},
pages = {217--229},
year = {1997},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/wwwj/Stein97a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SlonimKSL97,
author = {Donna K. Slonim and
Leonid Kruglyak and
Lincoln Stein and
Eric S. Lander},
editor = {Michael S. Waterman},
title = {Building human genome maps with radiation hybrids},
booktitle = {Proceedings of the First Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1997, Santa Fe, NM, USA,
January 20-23, 1997},
pages = {277--286},
publisher = {{ACM}},
year = {1997},
url = {https://doi.org/10.1145/267521.267886},
doi = {10.1145/267521.267886},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SlonimKSL97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/aw/Stein95,
author = {Lincoln Stein},
title = {How to Set Up and Maintain a World Wide Web Site: The Guide for Information
Providers},
publisher = {Addison-Wesley},
year = {1995},
url = {http://modperl.com:9000/WWW/index.html},
isbn = {0-201-63389-2},
timestamp = {Wed, 10 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/aw/Stein95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pos/RozenSG94,
author = {Steve Rozen and
Lincoln Stein and
Nathan Goodman},
editor = {Malcolm P. Atkinson and
David Maier and
V{\'{e}}ronique Benzaken},
title = {Constructing a Domain-Specific {DBMS} using a Persistent Object System},
booktitle = {Persistent Object Systems, Proceedings of the Sixth International
Workshop on Persistent Object Systems, Tarascon, Provence, France,
5-9 September 1994},
series = {Workshops in Computing},
pages = {526--541},
publisher = {Springer and British Computer Society},
year = {1994},
url = {https://doi.org/10.1007/978-1-4471-2122-0\_41},
doi = {10.1007/978-1-4471-2122-0\_41},
timestamp = {Wed, 11 May 2022 08:53:26 +0200},
biburl = {https://dblp.org/rec/conf/pos/RozenSG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/usenix/SteinMDRDRG94,
author = {Lincoln Stein and
Andre Marquis and
Robert Dredge and
Mary Pat Reeve and
Mark Daly and
Steve Rozen and
Nathan Goodman},
title = {Splicing {UNIX} into a Genome Mapping Laboratory},
booktitle = {{USENIX} Summer 1994 Technical Conference, Boston, Massachusetts,
USA, June 6-10, 1994, Conference Proceeding},
pages = {221--229},
publisher = {{USENIX} Association},
year = {1994},
url = {https://www.usenix.org/conference/usenix-summer-1994-technical-conference/splicing-unix-genome-mapping-laboratory},
timestamp = {Mon, 01 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/usenix/SteinMDRDRG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/GoodmanRS94,
author = {Nathan Goodman and
Steve Rozen and
Lincoln Stein},
editor = {Jorge B. Bocca and
Matthias Jarke and
Carlo Zaniolo},
title = {Building a Laboratory Information System Around a C++-Based Object-Oriented
{DBMS}},
booktitle = {VLDB'94, Proceedings of 20th International Conference on Very Large
Data Bases, September 12-15, 1994, Santiago de Chile, Chile},
pages = {722--729},
publisher = {Morgan Kaufmann},
year = {1994},
url = {http://www.vldb.org/conf/1994/P722.PDF},
timestamp = {Wed, 29 Mar 2017 16:45:24 +0200},
biburl = {https://dblp.org/rec/conf/vldb/GoodmanRS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/deductive/GoodmanRS93a,
author = {Nathan Goodman and
Steve Rozen and
Lincoln Stein},
editor = {Raghu Ramakrishnan},
title = {Requirements for a Deductive Query Language in the MapBase Genome-Mapping
Database},
booktitle = {Proceedings of the Workshop on Programming with Logic Databases. In
Conjunction with ILPS, Vancouver, BC, Canada, October 30, 1993},
series = {Technical Report},
volume = {{\#}1183},
pages = {18--32},
publisher = {University of Wisconsin},
year = {1993},
timestamp = {Wed, 20 Jun 2018 17:26:07 +0200},
biburl = {https://dblp.org/rec/conf/deductive/GoodmanRS93a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/deductive/GoodmanRS93,
author = {Nathan Goodman and
Steve Rozen and
Lincoln Stein},
editor = {Raghu Ramakrishnan},
title = {Requirements for a Deductive Query Language in a Genome-Mapping Database},
booktitle = {Applications of Logic Databases},
series = {The Kluwer International Series in Engineering and Computer Science
296},
pages = {259--278},
publisher = {Kluwer},
year = {1993},
timestamp = {Tue, 29 May 2012 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/deductive/GoodmanRS93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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