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ORCIDBibTeX records: Dinanath Sulakhe
@article{DBLP:journals/bib/SulakheDWBAXCAG19,
author = {Dinanath Sulakhe and
Mark D'Souza and
Sheng Wang and
Sandhya Balasubramanian and
Prashanth Athri and
Bingqing Xie and
Stefan Canzar and
Gady Agam and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Exploring the functional impact of alternative splicing on human protein
isoforms using available annotation sources},
journal = {Briefings Bioinform.},
volume = {20},
number = {5},
pages = {1754--1768},
year = {2019},
url = {https://doi.org/10.1093/bib/bby047},
doi = {10.1093/BIB/BBY047},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SulakheDWBAXCAG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/MadduriCDJRSDFH18,
author = {Ravi K. Madduri and
Kyle Chard and
Michel D'Arcy and
Segun Jung and
Alexis Rodriguez and
Dinanath Sulakhe and
Eric Deutsch and
Cory C. Funk and
Benjamin D. Heavner and
Matthew A. Richards and
Paul Shannon and
Gustavo Glusman and
Nathan D. Price and
Carl Kesselman and
Ian T. Foster},
title = {Reproducible big data science: {A} case study in continuous FAIRness},
booktitle = {Proceedings of Workshop on Research Objects (RO2018), Amsterdam, The
Netherlands, October 29, 2018},
year = {2018},
url = {https://doi.org/10.5281/zenodo.1310034},
doi = {10.5281/ZENODO.1310034},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ro/MadduriCDJRSDFH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheXTDBHWDA16,
author = {Dinanath Sulakhe and
Bingqing Xie and
Andrew Taylor and
Mark D'Souza and
Sandhya Balasubramanian and
Somaye Hashemifar and
Steven White and
Utpal J. Dave and
Gady Agam and
Jinbo Xu and
Sheng Wang and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx: a knowledge base and an analytical workbench for integrative
medicine},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {882--887},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1257},
doi = {10.1093/NAR/GKV1257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheXTDBHWDA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/MadduriCCLRSKDF15,
author = {Ravi K. Madduri and
Kyle Chard and
Ryan Chard and
Lukasz Lacinski and
Alex Rodriguez and
Dinanath Sulakhe and
David Kelly and
Utpal J. Dave and
Ian T. Foster},
title = {The Globus Galaxies platform: delivering science gateways as a service},
journal = {Concurr. Comput. Pract. Exp.},
volume = {27},
number = {16},
pages = {4344--4360},
year = {2015},
url = {https://doi.org/10.1002/cpe.3486},
doi = {10.1002/CPE.3486},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/MadduriCCLRSKDF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/MadduriSLLRCDF14,
author = {Ravi K. Madduri and
Dinanath Sulakhe and
Lukasz Lacinski and
Bo Liu and
Alex Rodriguez and
Kyle Chard and
Utpal J. Dave and
Ian T. Foster},
title = {Experiences building Globus Genomics: a next-generation sequencing
analysis service using Galaxy, Globus, and Amazon Web Services},
journal = {Concurr. Comput. Pract. Exp.},
volume = {26},
number = {13},
pages = {2266--2279},
year = {2014},
url = {https://doi.org/10.1002/cpe.3274},
doi = {10.1002/CPE.3274},
timestamp = {Sun, 24 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/MadduriSLLRCDF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheBXFTWBDXBGM14,
author = {Dinanath Sulakhe and
Sandhya Balasubramanian and
Bingqing Xie and
Bo Feng and
Andrew Taylor and
Sheng Wang and
Eduardo Berrocal and
Utpal J. Dave and
Jinbo Xu and
Daniela B{\"{o}}rnigen and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx: a database and knowledge extraction engine for integrative medicine},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1007--1012},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1166},
doi = {10.1093/NAR/GKT1166},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheBXFTWBDXBGM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SulakheTBFXBDFGM14,
author = {Dinanath Sulakhe and
Andrew Taylor and
Sandhya Balasubramanian and
Bo Feng and
Bingqing Xie and
Daniela B{\"{o}}rnigen and
Utpal J. Dave and
Ian T. Foster and
T. Conrad Gilliam and
Natalia Maltsev},
title = {Lynx web services for annotations and systems analysis of multi-gene
disorders},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {473--477},
year = {2014},
url = {https://doi.org/10.1093/nar/gku517},
doi = {10.1093/NAR/GKU517},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SulakheTBFXBDFGM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SulakheRPKMPDLF09,
author = {Dinanath Sulakhe and
Alex Rodriguez and
Nick Prozorovsky and
Nilesh Kavthekar and
Ravi K. Madduri and
Amol Parikh and
Paul Dave and
Lukasz Lacinski and
Ian T. Foster},
editor = {Johan Montagnat and
Ian J. Taylor},
title = {Distributed tools deployment and management for multiple galaxy instances
in globus genomics},
booktitle = {Proceedings of {WORKS} 2013: 8th Workshop On Workflows in Support
of Large-Scale Science, Held in conjunction with SC13, Denver, CO,
USA, November 17, 2013},
pages = {106--111},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2534248.2534259},
doi = {10.1145/2534248.2534259},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/SulakheRPKMPDLF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/MadduriDSLLF13,
author = {Ravi K. Madduri and
Paul Dave and
Dinanath Sulakhe and
Lukasz Lacinski and
Bo Liu and
Ian T. Foster},
editor = {Nancy Wilkins{-}Diehr},
title = {Experiences in building a next-generation sequencing analysis service
using galaxy, globus online and Amazon web service},
booktitle = {Extreme Science and Engineering Discovery Environment: Gateway to
Discovery, XSEDE13, San Diego, CA, {USA} - July 22 - 25, 2013},
pages = {34:1--34:3},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2484762.2484827},
doi = {10.1145/2484762.2484827},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/xsede/MadduriDSLLF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/XieASMCG12,
author = {Bingqing Xie and
Gady Agam and
Dinanath Sulakhe and
Natalia Maltsev and
Bhadrachalam Chitturi and
T. Conrad Gilliam},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {Prediction of candidate genes for neuropsychiatric disorders using
feature-based enrichment},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {564--566},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2383022},
doi = {10.1145/2382936.2383022},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/XieASMCG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/SulakheKD12,
author = {Dinanath Sulakhe and
Rajkumar Kettimuthu and
Utpal J. Dave},
title = {High-performance data management for genome sequencing centers using
Globus Online: {A} case study},
booktitle = {8th {IEEE} International Conference on E-Science, e-Science 2012,
Chicago, IL, USA, October 8-12, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/eScience.2012.6404443},
doi = {10.1109/ESCIENCE.2012.6404443},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/SulakheKD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanMNSSFG10,
author = {Wei Tan and
Ravi K. Madduri and
Aleksandra Nenadic and
Stian Soiland{-}Reyes and
Dinanath Sulakhe and
Ian T. Foster and
Carole A. Goble},
title = {caGrid Workflow Toolkit: {A} Taverna based workflow tool for cancer
Grid},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {542},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-542},
doi = {10.1186/1471-2105-11-542},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanMNSSFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icws/TanCSMFSG09,
author = {Wei Tan and
Kyle Chard and
Dinanath Sulakhe and
Ravi K. Madduri and
Ian T. Foster and
Stian Soiland{-}Reyes and
Carole A. Goble},
title = {Scientific Workflows as Services in caGrid: {A} Taverna and gRAVI
Approach},
booktitle = {{IEEE} International Conference on Web Services, {ICWS} 2009, Los
Angeles, CA, USA, 6-10 July 2009},
pages = {413--420},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICWS.2009.19},
doi = {10.1109/ICWS.2009.19},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icws/TanCSMFSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/SulakheRWFM08,
author = {Dinanath Sulakhe and
Alex Rodriguez and
Michael Wilde and
Ian T. Foster and
Natalia Maltsev},
title = {Interoperability of {GADU} in Using Heterogeneous Grid Resources for
Bioinformatics Applications},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {12},
number = {2},
pages = {241--246},
year = {2008},
url = {https://doi.org/10.1109/TITB.2007.897783},
doi = {10.1109/TITB.2007.897783},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/SulakheRWFM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/ChardOTSMF08,
author = {Kyle Chard and
Cem Onyuksel and
Wei Tan and
Dinanath Sulakhe and
Ravi K. Madduri and
Ian T. Foster},
title = {Build Grid Enabled Scientific Workflows Using gRAVI and Taverna},
booktitle = {Fourth International Conference on e-Science, e-Science 2008, 7-12
December 2008, Indianapolis, IN, {USA}},
pages = {614--619},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/eScience.2008.162},
doi = {10.1109/ESCIENCE.2008.162},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/ChardOTSMF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaltsevGSRSBZD06,
author = {Natalia Maltsev and
Elizabeth M. Glass and
Dinanath Sulakhe and
Alexis A. Rodriguez and
Mustafa H. Syed and
Tanuja Bompada and
Yi Zhang and
Mark D'Souza},
title = {{PUMA2} - grid-based high-throughput analysis of genomes and metabolic
pathways},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {369--372},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj095},
doi = {10.1093/NAR/GKJ095},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MaltsevGSRSBZD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/SulakheRWFM06,
author = {Dinanath Sulakhe and
Alex Rodriguez and
Michael Wilde and
Ian T. Foster and
Natalia Maltsev},
title = {Using Multiple Grid Resources for Bioinformatics Applications in {GADU}},
booktitle = {Sixth {IEEE} International Symposium on Cluster Computing and the
Grid (CCGrid 2006), 16-19 May 2006, Singapore},
pages = {41},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.ieeecomputersociety.org/10.1109/CCGRID.2006.182},
doi = {10.1109/CCGRID.2006.182},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/SulakheRWFM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/SulakheRDWNFM05,
author = {Dinanath Sulakhe and
Alex Rodriguez and
Mark D'Souza and
Michael Wilde and
Veronika Nefedova and
Ian T. Foster and
Natalia Maltsev},
title = {{GNARE:} an environment for grid-based high-throughput genome analysis},
booktitle = {5th International Symposium on Cluster Computing and the Grid (CCGrid
2005), 9-12 May, 2005, Cardiff, {UK}},
pages = {455--462},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CCGRID.2005.1558590},
doi = {10.1109/CCGRID.2005.1558590},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/SulakheRDWNFM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/FosterGG04,
author = {Ian T. Foster and
Jerry Gieraltowski and
Scott Gose and
Natalia Maltsev and
Edward N. May and
Alex Rodriguez and
Dinanath Sulakhe and
A. Vaniachine and
Jim Shank and
Saul Youssef and
David Adams and
Richard Baker and
Wensheng Deng and
Jason Smith and
Dantong Yu and
Iosif Legrand and
Suresh Singh and
Conrad Steenberg and
Yang Xia and
M. Anzar Afaq and
Eileen Berman and
James Annis and
L. A. T. Bauerdick and
Michael Ernst and
Ian Fisk and
Lisa Giacchetti and
Gregory E. Graham and
Anne Heavey and
Joseph Kaiser and
Nickolai Kuropatkin and
Ruth Pordes and
Vijay Sekhri and
John Weigand and
Yujun Wu and
Keith Baker and
Lawrence Sorrillo and
John Huth and
Matthew Allen and
Leigh Grundhoefer and
John Hicks and
Fred Luehring and
Steve Peck and
Robert Quick and
Stephen C. Simms and
George Fekete and
Jan vandenBerg and
Kihyeon Cho and
Kihwan Kwon and
Dongchul Son and
Hyoungwoo Park and
Shane Canon and
Keith R. Jackson and
David E. Konerding and
Jason Lee and
Doug Olson and
Iwona Sakrejda and
Brian Tierney and
Mark Green and
Russ Miller and
James Letts and
Terrence Martin and
David Bury and
Catalin Dumitrescu and
Daniel Engh and
Robert W. Gardner and
Marco Mambelli and
Yuri Smirnov and
Jens{-}S. V{\"{o}}ckler and
Michael Wilde and
Yong Zhao and
Xin Zhao and
Paul Avery and
Richard Cavanaugh and
Bockjoo Kim and
Craig Prescott and
Jorge Luis Rodriguez and
Andrew Zahn and
Shawn McKee and
Christopher T. Jordan and
James E. Prewett and
Timothy L. Thomas and
Horst Severini and
Ben Clifford and
Ewa Deelman and
Larry Flon and
Carl Kesselman and
Gaurang Mehta and
Nosa Olomu and
Karan Vahi and
Kaushik De and
Patrick McGuigan and
Mark Sosebee and
Dan Bradley and
Peter Couvares and
Alan DeSmet and
Carey Kireyev and
Erik Paulson and
Alain Roy and
Scott Koranda and
Brian Moe and
Bobby Brown and
Paul Sheldon},
title = {The Grid2003 Production Grid: Principles and Practice},
booktitle = {13th International Symposium on High-Performance Distributed Computing
{(HPDC-13} 2004), 4-6 June 2004, Honolulu, Hawaii, {USA}},
pages = {236--245},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.ieeecomputersociety.org/10.1109/HPDC.2004.36},
doi = {10.1109/HPDC.2004.36},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/FosterGG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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