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ORCIDBibTeX records: Martin Vingron
@article{DBLP:journals/bioinformatics/RapakouliaVOLUV23,
author = {Trisevgeni Rapakoulia and
Sara Lopez Ruiz De Vargas and
Persia Akbari Omgba and
Verena Laupert and
Igor Ulitsky and
Martin Vingron},
title = {{CENTRE:} a gradient boosting algorithm for Cell-type-specific ENhancer-Target
pREdiction},
journal = {Bioinform.},
volume = {39},
number = {11},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad687},
doi = {10.1093/BIOINFORMATICS/BTAD687},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RapakouliaVOLUV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKV23,
author = {Christiana N. Fogg and
Diane E. Kovats and
Martin Vingron},
title = {2023 Outstanding Contributions to {ISCB} Award: Shoba Ranganathan},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {3--4},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad306},
doi = {10.1093/BIOINFORMATICS/BTAD306},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKV23a,
author = {Christiana N. Fogg and
Diane E. Kovats and
Martin Vingron},
title = {2023 {ISCB} Overton Prize: Jingyi Jessica Li},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {5--6},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad307},
doi = {10.1093/BIOINFORMATICS/BTAD307},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKV23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKV23b,
author = {Christiana N. Fogg and
Diane E. Kovats and
Martin Vingron},
title = {2023 {ISCB} innovator award: Dana Pe'er},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {7--8},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad318},
doi = {10.1093/BIOINFORMATICS/BTAD318},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKV23b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKV23c,
author = {Christiana N. Fogg and
Diane E. Kovats and
Martin Vingron},
title = {2023 {ISCB} accomplishments by a senior scientist award: Mark Gerstein},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {9--10},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad316},
doi = {10.1093/BIOINFORMATICS/BTAD316},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKV23c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/IstrailPSV22,
author = {Sorin Istrail and
Pavel A. Pevzner and
Fengzhu Sun and
Martin Vingron},
title = {Special Issue: Professor Michael Waterman's 80th Birthday, Part 1},
journal = {J. Comput. Biol.},
volume = {29},
number = {7},
pages = {599--600},
year = {2022},
url = {https://doi.org/10.1089/cmb.2022.29065.si},
doi = {10.1089/CMB.2022.29065.SI},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/IstrailPSV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PevznerVRSI22,
author = {Pavel A. Pevzner and
Martin Vingron and
Christian M. Reidys and
Fengzhu Sun and
Sorin Istrail},
title = {Michael Waterman's Contributions to Computational Biology and Bioinformatics},
journal = {J. Comput. Biol.},
volume = {29},
number = {7},
pages = {601--615},
year = {2022},
url = {https://doi.org/10.1089/cmb.2022.29066.pp},
doi = {10.1089/CMB.2022.29066.PP},
timestamp = {Wed, 03 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/PevznerVRSI22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/LyV22,
author = {Lam{-}Ha Ly and
Martin Vingron},
title = {Effect of imputation on gene network reconstruction from single-cell
RNA-seq data},
journal = {Patterns},
volume = {3},
number = {2},
pages = {100414},
year = {2022},
url = {https://doi.org/10.1016/j.patter.2021.100414},
doi = {10.1016/J.PATTER.2021.100414},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/LyV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HellerV21,
author = {David Heller and
Martin Vingron},
title = {SVIM-asm: structural variant detection from haploid and diploid genome
assemblies},
journal = {Bioinform.},
volume = {36},
number = {22-23},
pages = {5519--5521},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa1034},
doi = {10.1093/BIOINFORMATICS/BTAA1034},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HellerV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggKV21,
author = {Christiana N. Fogg and
Diane E. Kovats and
Martin Vingron},
title = {{ISCB} Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt,
Ben Raphael, Teresa Attwood},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {1--6},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab383},
doi = {10.1093/BIOINFORMATICS/BTAB383},
timestamp = {Tue, 21 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoggKV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BennerV20,
author = {Philipp Benner and
Martin Vingron},
title = {ModHMM: {A} Modular Supra-Bayesian Genome Segmentation Method},
journal = {J. Comput. Biol.},
volume = {27},
number = {4},
pages = {442--457},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0280},
doi = {10.1089/CMB.2019.0280},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BennerV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MoeinzadehYMGHR20,
author = {M{-}Hossein Moeinzadeh and
Jun Yang and
Evgeny Muzychenko and
Giuseppe Gallone and
David Heller and
Knut Reinert and
Stefan A. Haas and
Martin Vingron},
title = {Ranbow: {A} fast and accurate method for polyploid haplotype reconstruction},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {5},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1007843},
doi = {10.1371/JOURNAL.PCBI.1007843},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/MoeinzadehYMGHR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhanbariLV19,
author = {Mahsa Ghanbari and
Julia Lasserre and
Martin Vingron},
title = {The Distance Precision Matrix: computing networks from non-linear
relationships},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {1009--1017},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty724},
doi = {10.1093/BIOINFORMATICS/BTY724},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhanbariLV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HellerV19,
author = {David Heller and
Martin Vingron},
title = {{SVIM:} structural variant identification using mapped long reads},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2907--2915},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz041},
doi = {10.1093/BIOINFORMATICS/BTZ041},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HellerV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZehnderBV19,
author = {Tobias Zehnder and
Philipp Benner and
Martin Vingron},
title = {Predicting enhancers in mammalian genomes using supervised hidden
Markov models},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {157:1--157:12},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2708-6},
doi = {10.1186/S12859-019-2708-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZehnderBV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KoppV19,
author = {Wolfgang Kopp and
Martin Vingron},
title = {{DNA} Motif Match Statistics Without Poisson Approximation},
journal = {J. Comput. Biol.},
volume = {26},
number = {8},
pages = {846--865},
year = {2019},
url = {https://doi.org/10.1089/cmb.2018.0144},
doi = {10.1089/CMB.2018.0144},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KoppV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BennerV19,
author = {Philipp Benner and
Martin Vingron},
editor = {Lenore J. Cowen},
title = {ModHMM: {A} Modular Supra-Bayesian Genome Segmentation Method},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {35--50},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_3},
doi = {10.1007/978-3-030-17083-7\_3},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BennerV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BommelLCV18,
author = {Alena van B{\"{o}}mmel and
Michael I. Love and
Ho{-}Ryun Chung and
Martin Vingron},
title = {coTRaCTE predicts co-occurring transcription factors within cell-type
specific enhancers},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {8},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1006372},
doi = {10.1371/JOURNAL.PCBI.1006372},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/BommelLCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-09367,
author = {Edgar Steiger and
Martin Vingron},
title = {Sparse-Group Bayesian Feature Selection Using Expectation Propagation
for Signal Recovery and Network Reconstruction},
journal = {CoRR},
volume = {abs/1809.09367},
year = {2018},
url = {http://arxiv.org/abs/1809.09367},
eprinttype = {arXiv},
eprint = {1809.09367},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-09367.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoppV17,
author = {Wolfgang Kopp and
Martin Vingron},
title = {An improved compound Poisson model for the number of motif hits in
{DNA} sequences},
journal = {Bioinform.},
volume = {33},
number = {24},
pages = {3929--3937},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx539},
doi = {10.1093/BIOINFORMATICS/BTX539},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoppV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HuskaV16,
author = {Matthew R. Huska and
Martin Vingron},
title = {Improved Prediction of Non-methylated Islands in Vertebrates Highlights
Different Characteristic Sequence Patterns},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {12},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1005249},
doi = {10.1371/JOURNAL.PCBI.1005249},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HuskaV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AncherbakKV16,
author = {Sergiy Ancherbak and
Ercan E. Kuruoglu and
Martin Vingron},
title = {Time-Dependent Gene Network Modelling by Sequential Monte Carlo},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {13},
number = {6},
pages = {1183--1193},
year = {2016},
url = {https://doi.org/10.1109/TCBB.2015.2496301},
doi = {10.1109/TCBB.2015.2496301},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AncherbakKV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeinigCTRSPHVJ15,
author = {Matthias Heinig and
Maria Colom{\'{e}}{-}Tatch{\'{e}} and
Aaron Taudt and
Carola Rintisch and
Sebastian Schafer and
Michal Pravenec and
Norbert H{\"{u}}bner and
Martin Vingron and
Frank Johannes},
title = {histoneHMM: Differential analysis of histone modifications with broad
genomic footprints},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {60:1--60:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0491-6},
doi = {10.1186/S12859-015-0491-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeinigCTRSPHVJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GhanbariLV15,
author = {Mahsa Ghanbari and
Julia Lasserre and
Martin Vingron},
title = {Reconstruction of gene networks using prior knowledge},
journal = {{BMC} Syst. Biol.},
volume = {9},
pages = {84},
year = {2015},
url = {https://doi.org/10.1186/s12918-015-0233-4},
doi = {10.1186/S12918-015-0233-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GhanbariLV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/editors14,
title = {{ISCB/SPRINGER} series in computational biology},
journal = {Bioinform.},
volume = {30},
number = {1},
pages = {146--147},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt670},
doi = {10.1093/BIOINFORMATICS/BTT670},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/editors14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengV14,
author = {Guofeng Meng and
Martin Vingron},
title = {Condition-specific target prediction from motifs and expression},
journal = {Bioinform.},
volume = {30},
number = {12},
pages = {1643--1650},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu066},
doi = {10.1093/BIOINFORMATICS/BTU066},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MisraSV14,
author = {Navodit Misra and
Ewa Szczurek and
Martin Vingron},
title = {Inferring the paths of somatic evolution in cancer},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {2456--2463},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu319},
doi = {10.1093/BIOINFORMATICS/BTU319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MisraSV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MammanaVC13,
author = {Alessandro Mammana and
Martin Vingron and
Ho{-}Ryun Chung},
title = {Inferring nucleosome positions with their histone mark annotation
from ChIP data},
journal = {Bioinform.},
volume = {29},
number = {20},
pages = {2547--2554},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt449},
doi = {10.1093/BIOINFORMATICS/BTT449},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MammanaVC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LasserreCV13,
author = {Julia Lasserre and
Ho{-}Ryun Chung and
Martin Vingron},
title = {Finding Associations among Histone Modifications Using Sparse Partial
Correlation Networks},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {9},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003168},
doi = {10.1371/JOURNAL.PCBI.1003168},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LasserreCV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EmdeSWSVKHR12,
author = {Anne{-}Katrin Emde and
Marcel H. Schulz and
David Weese and
Ruping Sun and
Martin Vingron and
Vera M. Kalscheuer and
Stefan A. Haas and
Knut Reinert},
title = {Detecting genomic indel variants with exact breakpoints in single-
and paired-end sequencing data using SplazerS},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {619--627},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts019},
doi = {10.1093/BIOINFORMATICS/BTS019},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EmdeSWSVKHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GokeSLV12,
author = {Jonathan G{\"{o}}ke and
Marcel H. Schulz and
Julia Lasserre and
Martin Vingron},
title = {Estimation of pairwise sequence similarity of mammalian enhancers
with word neighbourhood counts},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {656--663},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts028},
doi = {10.1093/BIOINFORMATICS/BTS028},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GokeSLV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLZECVH12,
author = {Ruping Sun and
Michael I. Love and
Tomasz Zemojtel and
Anne{-}Katrin Emde and
Ho{-}Ryun Chung and
Martin Vingron and
Stefan A. Haas},
title = {Breakpointer: using local mapping artifacts to support sequence breakpoint
discovery from single-end reads},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1024--1025},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts064},
doi = {10.1093/BIOINFORMATICS/BTS064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLZECVH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchulzZVB12,
author = {Marcel H. Schulz and
Daniel R. Zerbino and
Martin Vingron and
Ewan Birney},
title = {\emph{Oases: } robust \emph{de novo} RNA-seq assembly across the dynamic
range of expression levels},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1086--1092},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts094},
doi = {10.1093/BIOINFORMATICS/BTS094},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchulzZVB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/MysickovaV12,
author = {Alena Mysickov{\'{a}} and
Martin Vingron},
title = {Detection of interacting transcription factors in human tissues using
predicted {DNA} binding affinity},
journal = {{BMC} Genom.},
volume = {13},
number = {{S-1}},
pages = {S2},
year = {2012},
url = {https://doi.org/10.1186/1471-2164-13-S1-S2},
doi = {10.1186/1471-2164-13-S1-S2},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/MysickovaV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LasserreAVRH12,
author = {Julia Lasserre and
Steffen Arnold and
Martin Vingron and
Petra Reinke and
Carl Hinrichs},
title = {Predicting the outcome of renal transplantation},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {255--262},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2010-000004},
doi = {10.1136/AMIAJNL-2010-000004},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LasserreAVRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NiV12,
author = {Shengyu Ni and
Martin Vingron},
title = {{R2KS:} {A} Novel Measure for Comparing Gene Expression Based on Ranked
Gene Lists},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {766--775},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0026},
doi = {10.1089/CMB.2012.0026},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NiV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SerinV11,
author = {Akdes Serin and
Martin Vingron},
title = {DeBi: Discovering Differentially Expressed Biclusters using a Frequent
Itemset Approach},
journal = {Algorithms Mol. Biol.},
volume = {6},
pages = {18},
year = {2011},
url = {https://doi.org/10.1186/1748-7188-6-18},
doi = {10.1186/1748-7188-6-18},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SerinV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SzczurekMGBTV11,
author = {Ewa Szczurek and
Florian Markowetz and
Irit Gat{-}Viks and
Przemyslaw Biecek and
Jerzy Tiuryn and
Martin Vingron},
title = {Deregulation upon {DNA} damage revealed by joint analysis of context-specific
perturbation data},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {249},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-249},
doi = {10.1186/1471-2105-12-249},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SzczurekMGBTV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuanCNXTVSK11,
author = {Yuan Yuan and
Yi{-}Ping Phoebe Chen and
Shengyu Ni and
Augix Guohua Xu and
Lin Tang and
Martin Vingron and
Mehmet Somel and
Philipp Khaitovich},
title = {Development and application of a modified dynamic time warping algorithm
{(DTW-S)} to analyses of primate brain expression time series},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {347},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-347},
doi = {10.1186/1471-2105-12-347},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuanCNXTVSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GokeJBCOTLAV11,
author = {Jonathan G{\"{o}}ke and
Marc Jung and
Sarah Behrens and
Lukas Chavez and
Sean O'Keeffe and
Bernd Timmermann and
Hans Lehrach and
James Adjaye and
Martin Vingron},
title = {Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies
Conserved Enhancers Active in Early Embryonic Development},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {12},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002304},
doi = {10.1371/JOURNAL.PCBI.1002304},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GokeJBCOTLAV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/Vingron11,
author = {Martin Vingron},
editor = {Raffaele Giancarlo and
Giovanni Manzini},
title = {Computational Regulatory Genomics},
booktitle = {Combinatorial Pattern Matching - 22nd Annual Symposium, {CPM} 2011,
Palermo, Italy, June 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6661},
pages = {14},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21458-5\_3},
doi = {10.1007/978-3-642-21458-5\_3},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/Vingron11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengMV10,
author = {Guofeng Meng and
Axel Mosig and
Martin Vingron},
title = {A computational evaluation of over-representation of regulatory motifs
in the promoter regions of differentially expressed genes},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {267},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-267},
doi = {10.1186/1471-2105-11-267},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengMV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SzczurekBTV10,
author = {Ewa Szczurek and
Przemyslaw Biecek and
Jerzy Tiuryn and
Martin Vingron},
title = {Introducing Knowledge into Differential Expression Analysis},
journal = {J. Comput. Biol.},
volume = {17},
number = {8},
pages = {953--967},
year = {2010},
url = {https://doi.org/10.1089/cmb.2010.0034},
doi = {10.1089/CMB.2010.0034},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SzczurekBTV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BehrensV10,
author = {Sarah Behrens and
Martin Vingron},
title = {Studying the Evolution of Promoter Sequences: {A} Waiting Time Problem},
journal = {J. Comput. Biol.},
volume = {17},
number = {12},
pages = {1591--1606},
year = {2010},
url = {https://doi.org/10.1089/cmb.2010.0084},
doi = {10.1089/CMB.2010.0084},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BehrensV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KielbasaKRVB10,
author = {Szymon M. Kielbasa and
Holger Klein and
Helge G. Roider and
Martin Vingron and
Nils Bl{\"{u}}thgen},
title = {TransFind - predicting transcriptional regulators for gene sets},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {275--280},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq438},
doi = {10.1093/NAR/GKQ438},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KielbasaKRVB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoiderMOVH09,
author = {Helge G. Roider and
Thomas Manke and
Sean O'Keeffe and
Martin Vingron and
Stefan A. Haas},
title = {{PASTAA:} identifying transcription factors associated with sets of
co-regulated genes},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {435--442},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn627},
doi = {10.1093/BIOINFORMATICS/BTN627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoiderMOVH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapeKV09,
author = {Utz J. Pape and
Holger Klein and
Martin Vingron},
title = {Statistical detection of cooperative transcription factors with similarity
adjustment},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2103--2109},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp143},
doi = {10.1093/BIOINFORMATICS/BTP143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapeKV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChungV09,
author = {Ho{-}Ryun Chung and
Martin Vingron},
title = {Comparison of sequence-dependent tiling array normalization approaches},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-204},
doi = {10.1186/1471-2105-10-204},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChungV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuangV09,
author = {Xiaoqiu Huang and
Martin Vingron},
title = {Maximum Similarity: {A} New Formulation of Phylogenetic Reconstruction},
journal = {J. Comput. Biol.},
volume = {16},
number = {7},
pages = {887--896},
year = {2009},
url = {https://doi.org/10.1089/cmb.2008.0232},
doi = {10.1089/CMB.2008.0232},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HuangV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Gat-ViksV09,
author = {Irit Gat{-}Viks and
Martin Vingron},
title = {Evidence for Gene-Specific Rather Than Transcription Rate-Dependent
Histone {H3} Exchange in Yeast Coding Regions},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {2},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000282},
doi = {10.1371/JOURNAL.PCBI.1000282},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Gat-ViksV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchulzKBVR09,
author = {Marcel H. Schulz and
Sebastian K{\"{o}}hler and
Sebastian Bauer and
Martin Vingron and
Peter N. Robinson},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Exact Score Distribution Computation for Similarity Searches in Ontologies},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {298--309},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_25},
doi = {10.1007/978-3-642-04241-6\_25},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchulzKBVR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GiegerichBJUV08,
author = {Robert Giegerich and
Alvis Brazma and
Inge Jonassen and
Esko Ukkonen and
Martin Vingron},
title = {The {BREW} workshop series: a stimulating experience in PhD education},
journal = {Briefings Bioinform.},
volume = {9},
number = {3},
pages = {250--253},
year = {2008},
url = {https://doi.org/10.1093/bib/bbn002},
doi = {10.1093/BIB/BBN002},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GiegerichBJUV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapeRV08,
author = {Utz J. Pape and
Sven Rahmann and
Martin Vingron},
title = {Natural similarity measures between position frequency matrices with
an application to clustering},
journal = {Bioinform.},
volume = {24},
number = {3},
pages = {350--357},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm610},
doi = {10.1093/BIOINFORMATICS/BTM610},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapeRV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerGVR08,
author = {Sebastian Bauer and
Steffen Grossmann and
Martin Vingron and
Peter N. Robinson},
title = {Ontologizer 2.0 - a multifunctional tool for {GO} term enrichment
analysis and data exploration},
journal = {Bioinform.},
volume = {24},
number = {14},
pages = {1650--1651},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn250},
doi = {10.1093/BIOINFORMATICS/BTN250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerGVR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeMBV08,
author = {Ho{-}Joon Lee and
Thomas Manke and
Ricardo Bringas and
Martin Vingron},
title = {Prioritization of gene regulatory interactions from large-scale modules
in yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-32},
doi = {10.1186/1471-2105-9-32},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeMBV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PapeRSV08,
author = {Utz J. Pape and
Sven Rahmann and
Fengzhu Sun and
Martin Vingron},
title = {Compound Poisson Approximation of the Number of Occurrences of a Position
Frequency Matrix {(PFM)} on Both Strands},
journal = {J. Comput. Biol.},
volume = {15},
number = {6},
pages = {547--564},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0084},
doi = {10.1089/CMB.2007.0084},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PapeRSV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MankeRV08,
author = {Thomas Manke and
Helge G. Roider and
Martin Vingron},
title = {Statistical Modeling of Transcription Factor Binding Affinities Predicts
Regulatory Interactions},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {3},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000039},
doi = {10.1371/JOURNAL.PCBI.1000039},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MankeRV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/PapeKV08,
author = {Utz J. Pape and
Holger Klein and
Martin Vingron},
editor = {Andreas Beyer and
Michael Schroeder},
title = {Statistical Detection of Cooperative Transcription Factors with Similarity
Adjustment},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008,
September 9-12, 2008, Dresden, Germany},
series = {{LNI}},
volume = {{P-136}},
pages = {96--105},
publisher = {{GI}},
year = {2008},
url = {https://dl.gi.de/handle/20.500.12116/21206},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/PapeKV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SchulzWRDRV08,
author = {Marcel H. Schulz and
David Weese and
Tobias Rausch and
Andreas D{\"{o}}ring and
Knut Reinert and
Martin Vingron},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Fast and Adaptive Variable Order Markov Chain Construction},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {306--317},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_26},
doi = {10.1007/978-3-540-87361-7\_26},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SchulzWRDRV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2008,
editor = {Martin Vingron and
Limsoon Wong},
title = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3},
doi = {10.1007/978-3-540-78839-3},
isbn = {978-3-540-78838-6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaisGV07,
author = {Abha Singh Bais and
Steffen Grossmann and
Martin Vingron},
title = {Simultaneous alignment and annotation of \emph{cis}-regulatory regions},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {44--49},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl305},
doi = {10.1093/BIOINFORMATICS/BTL305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaisGV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoiderKMV07,
author = {Helge G. Roider and
Aditi Kanhere and
Thomas Manke and
Martin Vingron},
title = {Predicting transcription factor affinities to {DNA} from a biophysical
model},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {134--141},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl565},
doi = {10.1093/BIOINFORMATICS/BTL565},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoiderKMV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrossmannBRV07,
author = {Steffen Grossmann and
Sebastian Bauer and
Peter N. Robinson and
Martin Vingron},
title = {Improved detection of overrepresentation of Gene-Ontology annotations
with parent-child analysis},
journal = {Bioinform.},
volume = {23},
number = {22},
pages = {3024--3031},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm440},
doi = {10.1093/BIOINFORMATICS/BTM440},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrossmannBRV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArndtV07,
author = {Peter F. Arndt and
Martin Vingron},
title = {The Otto Warburg International Summer School and Workshop on Networks
and Regulation},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-6}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S6-S1},
doi = {10.1186/1471-2105-8-S6-S1},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArndtV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/KlauRSVR07,
author = {Gunnar W. Klau and
Sven Rahmann and
Alexander Schliep and
Martin Vingron and
Knut Reinert},
title = {Integer linear programming approaches for non-unique probe selection},
journal = {Discret. Appl. Math.},
volume = {155},
number = {6-7},
pages = {840--856},
year = {2007},
url = {https://doi.org/10.1016/j.dam.2005.09.021},
doi = {10.1016/J.DAM.2005.09.021},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/KlauRSVR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MesserBVA07,
author = {Philipp W. Messer and
Ralf Bundschuh and
Martin Vingron and
Peter F. Arndt},
title = {Effects of Long-Range Correlations in {DNA} on Sequence Alignment
Score Statistics},
journal = {J. Comput. Biol.},
volume = {14},
number = {5},
pages = {655--668},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.R008},
doi = {10.1089/CMB.2007.R008},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MesserBVA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DieterichFV07,
author = {Christoph Dieterich and
M. W. Franz and
Martin Vingron},
title = {Developments in {CORG:} a gene-centric comparative genomics resource},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {32--35},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl977},
doi = {10.1093/NAR/GKL977},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DieterichFV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChungKV07,
author = {Ho{-}Ryun Chung and
Dennis Kostka and
Martin Vingron},
title = {A physical model for tiling array analysis},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {80--86},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm167},
doi = {10.1093/BIOINFORMATICS/BTM167},
timestamp = {Sat, 07 Sep 2019 11:59:25 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ChungKV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2007,
editor = {Claudia Falter and
Alexander Schliep and
Joachim Selbig and
Martin Vingron and
Dirk Walther},
title = {Proceedings of the German Conference on Bioinformatics, {GCB} 2007,
September 26-28, 2007, Potsdam, Germany},
series = {{LNI}},
volume = {{P-115}},
publisher = {{GI}},
year = {2007},
url = {https://dl.gi.de/handle/20.500.12116/22357},
isbn = {978-3-88579-209-3},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SteinhoffV06,
author = {Christine Steinhoff and
Martin Vingron},
title = {Normalization and quantification of differential expression in gene
expression microarrays},
journal = {Briefings Bioinform.},
volume = {7},
number = {2},
pages = {166--177},
year = {2006},
url = {https://doi.org/10.1093/bib/bbl002},
doi = {10.1093/BIB/BBL002},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SteinhoffV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuzV06,
author = {Hannes Luz and
Martin Vingron},
title = {Family specific rates of protein evolution},
journal = {Bioinform.},
volume = {22},
number = {10},
pages = {1166--1171},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl073},
doi = {10.1093/BIOINFORMATICS/BTL073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuzV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YeangV06,
author = {Chen{-}Hsiang Yeang and
Martin Vingron},
title = {A joint model of regulatory and metabolic networks},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {332},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-332},
doi = {10.1186/1471-2105-7-332},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YeangV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BehzadiV06,
author = {Behshad Behzadi and
Martin Vingron},
editor = {Moshe Lewenstein and
Gabriel Valiente},
title = {An Improved Algorithm for the Macro-evolutionary Phylogeny Problem},
booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006,
Barcelona, Spain, July 5-7, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4009},
pages = {177--187},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11780441\_17},
doi = {10.1007/11780441\_17},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BehzadiV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BehzadiV06,
author = {Behshad Behzadi and
Martin Vingron},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Reconstructing Domain Compositions of Ancestral Multi-domain Proteins},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {1--10},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_1},
doi = {10.1007/11864127\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BehzadiV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GrossmannBRV06,
author = {Steffen Grossmann and
Sebastian Bauer and
Peter N. Robinson and
Martin Vingron},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {An Improved Statistic for Detecting Over-Represented Gene Ontology
Annotations in Gene Sets},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {85--98},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_9},
doi = {10.1007/11732990\_9},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GrossmannBRV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MesserBVA06,
author = {Philipp W. Messer and
Ralf Bundschuh and
Martin Vingron and
Peter F. Arndt},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Alignment Statistics for Long-Range Correlated Genomic Sequences},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {426--440},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_36},
doi = {10.1007/11732990\_36},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MesserBVA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2005P5441,
editor = {Jacek Blazewicz and
Johann Christoph Freytag and
Martin Vingron},
title = {Managing and Mining Genome Information: Frontiers in Bioinformatics,
30. October - 4. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05441},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2006},
url = {http://drops.dagstuhl.de/portals/05441/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2005P5441.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MichaelDV05,
author = {Morris Michael and
Christoph Dieterich and
Martin Vingron},
title = {SITEBLAST-rapid and sensitive local alignment of genomic sequences
employing motif anchors},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2093--2094},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti224},
doi = {10.1093/BIOINFORMATICS/BTI224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MichaelDV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrauseSV05,
author = {Antje Krause and
Jens Stoye and
Martin Vingron},
title = {Large scale hierarchical clustering of protein sequences},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {15},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-15},
doi = {10.1186/1471-2105-6-15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrauseSV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeinelKLVS05,
author = {Thomas Meinel and
Antje Krause and
Hannes Luz and
Martin Vingron and
Eike Staub},
title = {The {SYSTERS} Protein Family Database in 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {226--229},
year = {2005},
url = {https://doi.org/10.1093/nar/gki030},
doi = {10.1093/NAR/GKI030},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MeinelKLVS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RoepckeFSV05,
author = {Stefan Roepcke and
Petko Fiziev and
P. H. Seeburg and
Martin Vingron},
title = {{SVC:} structured visualization of evolutionary sequence conservation},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {271--273},
year = {2005},
url = {https://doi.org/10.1093/nar/gki589},
doi = {10.1093/NAR/GKI589},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RoepckeFSV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RoepckeGRV05,
author = {Stefan Roepcke and
Steffen Grossmann and
Sven Rahmann and
Martin Vingron},
title = {T-Reg Comparator: an analysis tool for the comparison of position
weight matrices},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {438--441},
year = {2005},
url = {https://doi.org/10.1093/nar/gki590},
doi = {10.1093/NAR/GKI590},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RoepckeGRV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuptaVH05,
author = {Shobhit Gupta and
Martin Vingron and
Stefan A. Haas},
title = {{T-STAG:} resource and web-interface for tissue-specific transcripts
and genes},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {654--658},
year = {2005},
url = {https://doi.org/10.1093/nar/gki350},
doi = {10.1093/NAR/GKI350},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuptaVH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/LuzV05,
author = {Hannes Luz and
Martin Vingron},
editor = {Andrew E. Torda and
Stefan Kurtz and
Matthias Rarey},
title = {Familz specific rates of protein evolution},
booktitle = {Proceedings of the German Conference on Bioinformatics {(GCB} 2005),
Hamburg, Germany, October 5-7, 2005},
series = {{LNI}},
volume = {{P-71}},
pages = {133--144},
publisher = {{GI}},
year = {2005},
url = {https://dl.gi.de/handle/20.500.12116/24927},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/LuzV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BlazewiczFV05,
author = {Jacek Blazewicz and
Johann Christoph Freytag and
Martin Vingron},
editor = {Jacek Blazewicz and
Johann Christoph Freytag and
Martin Vingron},
title = {05441 Executive Summary - Managing and Mining Genome Information:
Frontiers in Bioinformatics},
booktitle = {Managing and Mining Genome Information: Frontiers in Bioinformatics,
30. October - 4. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05441},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/475},
timestamp = {Thu, 10 Jun 2021 13:02:09 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BlazewiczFV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BlazewiczFV05a,
author = {Jacek Blazewicz and
Johann Christoph Freytag and
Martin Vingron},
editor = {Jacek Blazewicz and
Johann Christoph Freytag and
Martin Vingron},
title = {05441 Abstracts Collection - Managing and Mining Genome Information:
Frontiers in Bioinformatics},
booktitle = {Managing and Mining Genome Information: Frontiers in Bioinformatics,
30. October - 4. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05441},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/476},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BlazewiczFV05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrassAB04,
author = {Torsten Crass and
Iris Antes and
Rico Basekow and
Peer Bork and
Christian Buning and
Maik Christensen and
Holger Claussen and
Christian Ebeling and
Peter Ernst and
Val{\'{e}}rie Gailus{-}Durner and
Karl{-}Heinz Glatting and
Rolf Gohla and
Frank G{\"{o}}{\ss}ling and
Korbinian Grote and
Karsten R. Heidtke and
Alexander Herrmann and
Sean O'Keeffe and
O. Kie{\ss}lich and
Sven Kolibal and
Jan O. Korbel and
Thomas Lengauer and
Ines Liebich and
Mark van der Linden and
Hannes Luz and
Kathrin Meissner and
Christian von Mering and
Heinz{-}Theodor Mevissen and
Hans{-}Werner Mewes and
Holger Michael and
Martin Mokrejs and
Tobias M{\"{u}}ller and
Heike Pospisil and
Matthias Rarey and
Jens G. Reich and
Ralf Schneider and
Dietmar Schomburg and
Steffen Schulze{-}Kremer and
Knut Schwarzer and
Ingolf Sommer and
Stephan Springstubbe and
S{\'{a}}ndor Suhai and
Gnanasekaran Thoppae and
Martin Vingron and
Jens Warfsmann and
Thomas Werner and
Daniel Wetzler and
Edgar Wingender and
Ralf Zimmer},
title = {The Helmholtz Network for Bioinformatics: an integrative web portal
for bioinformatics resources},
journal = {Bioinform.},
volume = {20},
number = {2},
pages = {268--270},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg398},
doi = {10.1093/BIOINFORMATICS/BTG398},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrassAB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuptaZKVH04,
author = {Shobhit Gupta and
Dorothea Zink and
Bernhard Korn and
Martin Vingron and
Stefan A. Haas},
title = {Genome wide identification and classification of alternative splicing
based on {EST} data},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2579--2585},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth288},
doi = {10.1093/BIOINFORMATICS/BTH288},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuptaZKVH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RateitschakMV04,
author = {Katja Rateitschak and
Tobias M{\"{u}}ller and
Martin Vingron},
title = {Annotating significant pairs of transcription factor binding sites
in regulatory {DNA}},
journal = {Silico Biol.},
volume = {4},
number = {4},
pages = {479--487},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00150},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/RateitschakMV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/HeydebreckSKLV04,
author = {Anja von Heydebreck and
Silke Sperling and
Bogac Kaynak and
Hans Lehrach and
Martin Vingron},
title = {Genexpressionsanalyse komplexer klinischer Ph{\"{a}}notypen mittels
cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes
using cDNA-Arrays)},
journal = {it Inf. Technol.},
volume = {46},
number = {1},
pages = {26--30},
year = {2004},
url = {http://www.extenza-eps.com/extenza/loadHTML?objectIDValue=26507\&\#38;type=abstract},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/HeydebreckSKLV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HermjakobMLMKOVRRVMABCSA04,
author = {Henning Hermjakob and
Luisa Montecchi{-}Palazzi and
Chris Lewington and
Sugath Mudali and
Samuel Kerrien and
Sandra E. Orchard and
Martin Vingron and
Bernd Roechert and
Peter Roepstorff and
Alfonso Valencia and
Hanah Margalit and
John Armstrong and
Amos Bairoch and
Gianni Cesareni and
David James Sherman and
Rolf Apweiler},
title = {IntAct: an open source molecular interaction database},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {452--455},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh052},
doi = {10.1093/NAR/GKH052},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HermjakobMLMKOVRRVMABCSA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DieterichRV04,
author = {Christoph Dieterich and
Sven Rahmann and
Martin Vingron},
title = {Functional inference from non-random distributions of conserved predicted
transcription factor binding sites},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {109--115},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth908},
doi = {10.1093/BIOINFORMATICS/BTH908},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/DieterichRV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KlauRSVR04,
author = {Gunnar W. Klau and
Sven Rahmann and
Alexander Schliep and
Martin Vingron and
Knut Reinert},
title = {Optimal robust non-unique probe selection using Integer Linear Programming},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {186--193},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth936},
doi = {10.1093/BIOINFORMATICS/BTH936},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/KlauRSVR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MankeDV04,
author = {Thomas Manke and
Christoph Dieterich and
Martin Vingron},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Detecting Functional Modules of Transcription Factor Binding Sites
in the Human Genome},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {14--21},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_2},
doi = {10.1007/978-3-540-32280-1\_2},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MankeDV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/SchwikowskiV03,
author = {Benno Schwikowski and
Martin Vingron},
title = {Weighted sequence graphs: boosting iterated dynamic programming using
locally suboptimal solutions},
journal = {Discret. Appl. Math.},
volume = {127},
number = {1},
pages = {95--117},
year = {2003},
url = {https://doi.org/10.1016/S0166-218X(02)00288-3},
doi = {10.1016/S0166-218X(02)00288-3},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/SchwikowskiV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/SchmidtPVH03,
author = {Heiko A. Schmidt and
Ekkehard Petzold and
Martin Vingron and
Arndt von Haeseler},
title = {Molecular phylogenetics: parallelized parameter estimation and quartet
puzzling},
journal = {J. Parallel Distributed Comput.},
volume = {63},
number = {7-8},
pages = {719--727},
year = {2003},
url = {https://doi.org/10.1016/S0743-7315(03)00129-1},
doi = {10.1016/S0743-7315(03)00129-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jpdc/SchmidtPVH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DieterichWRLV03,
author = {Christoph Dieterich and
Haiyan Wang and
Katja Rateitschak and
Hannes Luz and
Martin Vingron},
title = {{CORG:} a database for COmparative Regulatory Genomics},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {55--57},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg007},
doi = {10.1093/NAR/GKG007},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DieterichWRLV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/DieterichHV03,
author = {Christoph Dieterich and
Ralf Herwig and
Martin Vingron},
title = {Exploring potential target genes of signaling pathways by predicting
conserved transcription factor binding sites},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2003), September 27-30, 2003, Paris, France},
pages = {50--56},
year = {2003},
timestamp = {Mon, 27 Oct 2003 15:56:17 +0100},
biburl = {https://dblp.org/rec/conf/eccb/DieterichHV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MeinelVK03,
author = {Thomas Meinel and
Martin Vingron and
Antje Krause},
title = {The {SYSTERS} protein family database: Taxon-related protein family
size distributions and singleton frequencies},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2003,
October 12-14, 2003, Neuherberg/Garching near Munich, Germany},
pages = {103--108},
year = {2003},
timestamp = {Tue, 15 Mar 2005 13:11:15 +0100},
biburl = {https://dblp.org/rec/conf/gcb/MeinelVK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ida/SteinhoffMNV03,
author = {Christine Steinhoff and
Tobias M{\"{u}}ller and
Ulrike A. Nuber and
Martin Vingron},
editor = {Michael R. Berthold and
Hans{-}Joachim Lenz and
Elizabeth Bradley and
Rudolf Kruse and
Christian Borgelt},
title = {Gaussian Mixture Density Estimation Applied to Microarray Data},
booktitle = {Advances in Intelligent Data Analysis V, 5th International Symposium
on Intelligent Data Analysis, {IDA} 2003, Berlin, Germany, August
28-30, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2810},
pages = {418--429},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-45231-7\_39},
doi = {10.1007/978-3-540-45231-7\_39},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/ida/SteinhoffMNV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2003,
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075},
doi = {10.1145/640075},
isbn = {1-58113-635-8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FellenbergHBHV02,
author = {Kurt Fellenberg and
Nicole C. Hauser and
Benedikt Brors and
J{\"{o}}rg D. Hoheisel and
Martin Vingron},
title = {Microarray data warehouse allowing for inclusion of experiment annotations
in statistical analysis},
journal = {Bioinform.},
volume = {18},
number = {3},
pages = {423--433},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.3.423},
doi = {10.1093/BIOINFORMATICS/18.3.423},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FellenbergHBHV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtSVH02,
author = {Heiko A. Schmidt and
Korbinian Strimmer and
Martin Vingron and
Arndt von Haeseler},
title = {{TREE-PUZZLE:} maximum likelihood phylogenetic analysis using quartets
and parallel computing},
journal = {Bioinform.},
volume = {18},
number = {3},
pages = {502--504},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.3.502},
doi = {10.1093/BIOINFORMATICS/18.3.502},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtSVH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SchomburgV02,
author = {Dietmar Schomburg and
Martin Vingron},
title = {Bioinformatics research and education in Germany},
journal = {Silico Biol.},
volume = {2},
number = {3},
pages = {169--171},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00038},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SchomburgV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrauseHCV03,
author = {Antje Krause and
Stefan A. Haas and
Eivind Coward and
Martin Vingron},
title = {SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome
to protein},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {299--300},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.299},
doi = {10.1093/NAR/30.1.299},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KrauseHCV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/compstat/HeydebreckHPV02,
author = {Anja von Heydebreck and
Wolfgang Huber and
Annemarie Poustka and
Martin Vingron},
editor = {Wolfgang K. H{\"{a}}rdle and
Bernd R{\"{o}}nz},
title = {Variance Stabilization and Robust Normalization for Microarray Gene
Expression Data},
booktitle = {{COMPSTAT} 2002, Proceedings in Computational Statistics, 15th Symposium,
Berlin, Germany, August 24-28, 2002},
pages = {623--628},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/978-3-642-57489-4\_97},
doi = {10.1007/978-3-642-57489-4\_97},
timestamp = {Sun, 25 Oct 2020 23:02:37 +0100},
biburl = {https://dblp.org/rec/conf/compstat/HeydebreckHPV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/BoueVKK02,
author = {St{\'{e}}phanie Bou{\'{e}} and
Martin Vingron and
Evgenia V. Kriventseva and
Ina Koch},
title = {Theoretical analysis of alternative splice forms using computational
methods},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {65--73},
year = {2002},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/eccb/BoueVKK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/DieterichCWRKV02,
author = {Christoph Dieterich and
Brian Cusack and
Haiyan Wang and
Katja Rateitschak and
Antje Krause and
Martin Vingron},
title = {Annotating regulatory {DNA} based on man-mouse genomic comparison},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {84--90},
year = {2002},
timestamp = {Thu, 14 Nov 2002 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/DieterichCWRKV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/NicodemeDV02,
author = {Pierre Nicod{\`{e}}me and
T. Doerks and
Martin Vingron},
title = {Proteome analysis based on motif statistics},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {161--171},
year = {2002},
timestamp = {Thu, 14 Nov 2002 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/NicodemeDV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HuberHSPV02,
author = {Wolfgang Huber and
Anja von Heydebreck and
Holger S{\"{u}}ltmann and
Annemarie Poustka and
Martin Vingron},
title = {Variance stabilization applied to microarray data calibration and
to the quantification of differential expression},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {96--104},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/HuberHSPV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpangV01,
author = {Rainer Spang and
Martin Vingron},
title = {Limits of homology detection by pairwise sequence comparison},
journal = {Bioinform.},
volume = {17},
number = {4},
pages = {338--342},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.4.338},
doi = {10.1093/BIOINFORMATICS/17.4.338},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpangV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Vingron01,
author = {Martin Vingron},
title = {Bioinformatics needs to adopt statistical thinking - Editorial},
journal = {Bioinform.},
volume = {17},
number = {5},
pages = {389--390},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.5.389},
doi = {10.1093/BIOINFORMATICS/17.5.389},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Vingron01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HeydebreckHPV01,
author = {Anja von Heydebreck and
Wolfgang Huber and
Annemarie Poustka and
Martin Vingron},
title = {Identifying splits with clear separation: a new class discovery method
for gene expression data},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {107--114},
year = {2001},
timestamp = {Thu, 20 Jun 2002 11:09:36 +0200},
biburl = {https://dblp.org/rec/conf/ismb/HeydebreckHPV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeissbarthFBABHSHSPV00,
author = {Tim Bei{\ss}barth and
Kurt Fellenberg and
Benedikt Brors and
Rosa Arribas{-}Prat and
Judith M. Boer and
Nicole C. Hauser and
Marcel Scheideler and
J{\"{o}}rg D. Hoheisel and
G{\"{u}}nther Sch{\"{u}}tz and
Annemarie Poustka and
Martin Vingron},
title = {Processing and quality control of {DNA} array hybridization data},
journal = {Bioinform.},
volume = {16},
number = {11},
pages = {1014--1022},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.11.1014},
doi = {10.1093/BIOINFORMATICS/16.11.1014},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeissbarthFBABHSHSPV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/KececiogluLMMRV00,
author = {John D. Kececioglu and
Hans{-}Peter Lenhof and
Kurt Mehlhorn and
Petra Mutzel and
Knut Reinert and
Martin Vingron},
title = {A polyhedral approach to sequence alignment problems},
journal = {Discret. Appl. Math.},
volume = {104},
number = {1-3},
pages = {143--186},
year = {2000},
url = {https://doi.org/10.1016/S0166-218X(00)00194-3},
doi = {10.1016/S0166-218X(00)00194-3},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/KececiogluLMMRV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeberSFHV00,
author = {Steffen Heber and
Jens Stoye and
Marcus Frohme and
J{\"{o}}rg D. Hoheisel and
Martin Vingron},
title = {Contig Selection in Physical Mapping},
journal = {J. Comput. Biol.},
volume = {7},
number = {3-4},
pages = {395--408},
year = {2000},
url = {https://doi.org/10.1089/106652700750050853},
doi = {10.1089/106652700750050853},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HeberSFHV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MullerV00,
author = {Tobias M{\"{u}}ller and
Martin Vingron},
title = {Modeling Amino Acid Replacement},
journal = {J. Comput. Biol.},
volume = {7},
number = {6},
pages = {761--776},
year = {2000},
url = {https://doi.org/10.1089/10665270050514918},
doi = {10.1089/10665270050514918},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MullerV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PolletSGVN00,
author = {Nicolas Pollet and
Heiko A. Schmidt and
Volker Gawantka and
Martin Vingron and
Christof Niehrs},
title = {Axeldb: a Xenopus laevis database focusing on gene expression},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {139--140},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.139},
doi = {10.1093/NAR/28.1.139},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PolletSGVN00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrauseSV00,
author = {Antje Krause and
Jens Stoye and
Martin Vingron},
title = {The {SYSTERS} protein sequence cluster set},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {270--272},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.270},
doi = {10.1093/NAR/28.1.270},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KrauseSV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DesperV00,
author = {Richard Desper and
Martin Vingron},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Tree fitting: an algebraic approach using profile distances},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {119--126},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332354},
doi = {10.1145/332306.332354},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DesperV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeberSHV00,
author = {Steffen Heber and
Jens Stoye and
J{\"{o}}rg D. Hoheisel and
Martin Vingron},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Contig selection in physical mapping},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {155--164},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332361},
doi = {10.1145/332306.332361},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeberSHV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrauseNBRV99,
author = {Antje Krause and
Pierre Nicod{\`{e}}me and
Erich Bornberg{-}Bauer and
Marc Rehmsmeier and
Martin Vingron},
title = {{WWW} access to the {SYSTERS} protein sequence cluster set},
journal = {Bioinform.},
volume = {15},
number = {3},
pages = {262--263},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.3.262},
doi = {10.1093/BIOINFORMATICS/15.3.262},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrauseNBRV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MullerSV99,
author = {Tobias M{\"{u}}ller and
Rainer Spang and
Martin Vingron},
title = {A new method for modeling protein evolution},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {2--8},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/MullerSV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/RehmsmeierV99,
author = {Marc Rehmsmeier and
Martin Vingron},
title = {Phylogeny meets sequence search},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {66--72},
year = {1999},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/RehmsmeierV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BurkhardtCFLRV99,
author = {Stefan Burkhardt and
Andreas Crauser and
Paolo Ferragina and
Hans{-}Peter Lenhof and
Eric Rivals and
Martin Vingron},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {\emph{q}-gram based database searching using a suffix array {(QUASAR)}},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {77--83},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299460},
doi = {10.1145/299432.299460},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BurkhardtCFLRV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dimacs/dimacs47,
editor = {Martin Farach{-}Colton and
Fred S. Roberts and
Martin Vingron and
Michael S. Waterman},
title = {Mathematical Support for Molecular Biology, Proceedings from the {DIMACS}
Special Year, 1998},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {47},
publisher = {{DIMACS/AMS}},
year = {1999},
url = {https://doi.org/10.1090/dimacs/047},
doi = {10.1090/DIMACS/047},
isbn = {978-0-8218-0826-9},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/dimacs47.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpangV98,
author = {Rainer Spang and
Martin Vingron},
title = {Statistics of large-scale sequence searching},
journal = {Bioinform.},
volume = {14},
number = {3},
pages = {279--284},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.3.279},
doi = {10.1093/BIOINFORMATICS/14.3.279},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpangV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanEVB98,
author = {Yan P. Yuan and
Oliver Eulenstein and
Martin Vingron and
Peer Bork},
title = {Towards detection of orthologues in sequence databases},
journal = {Bioinform.},
volume = {14},
number = {3},
pages = {285--289},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.3.285},
doi = {10.1093/BIOINFORMATICS/14.3.285},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanEVB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrauseV98,
author = {Antje Krause and
Martin Vingron},
title = {A set-theoretic approach to database searching and clustering},
journal = {Bioinform.},
volume = {14},
number = {5},
pages = {430--438},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.5.430},
doi = {10.1093/BIOINFORMATICS/14.5.430},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrauseV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/EulensteinV98,
author = {Oliver Eulenstein and
Martin Vingron},
title = {On the Equivalence of Two Tree Mapping Measures},
journal = {Discret. Appl. Math.},
volume = {88},
number = {1-3},
pages = {103--128},
year = {1998},
url = {https://doi.org/10.1016/S0166-218X(98)00068-7},
doi = {10.1016/S0166-218X(98)00068-7},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/EulensteinV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EulensteinMV98,
author = {Oliver Eulenstein and
Boris G. Mirkin and
Martin Vingron},
title = {Duplication-Based Measures of Difference Between Gene and Species
Trees},
journal = {J. Comput. Biol.},
volume = {5},
number = {1},
pages = {135--148},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.135},
doi = {10.1089/CMB.1998.5.135},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/EulensteinMV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LenhofRV98,
author = {Hans{-}Peter Lenhof and
Knut Reinert and
Martin Vingron},
title = {A Polyhedral Approach to {RNA} Sequence Structure Alignment},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {517--530},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.517},
doi = {10.1089/CMB.1998.5.517},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LenhofRV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/Vingron98,
author = {Martin Vingron},
editor = {Martin Farach{-}Colton and
Fred S. Roberts and
Martin Vingron and
Michael S. Waterman},
title = {Sequence alignment and phylogeny construction},
booktitle = {Mathematical Support for Molecular Biology, Proceedings from the {DIMACS}
Special Year, 1998},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {47},
pages = {53--63},
publisher = {{DIMACS/AMS}},
year = {1998},
url = {https://doi.org/10.1090/dimacs/047/03},
doi = {10.1090/DIMACS/047/03},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/Vingron98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KrauseNRV98,
author = {Antje Krause and
Pierre Nicod{\`{e}}me and
Marc Rehmsmeier and
Martin Vingron},
title = {Automatic clustering of large sequence databases},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 15:48:14 +0200},
biburl = {https://dblp.org/rec/conf/gcb/KrauseNRV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SchmidtV98,
author = {Heiko A. Schmidt and
Martin Vingron},
title = {pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic
Analysis},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/SchmidtV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifip/Vingron98,
author = {Martin Vingron},
editor = {Kurt Mehlhorn},
title = {Alignment and Phylogeny Construction for Biological Sequences},
booktitle = {Fundamentals - Foundations of Computer Science, {IFIP} World Computer
Congress 1998, August 31 - September 4, 1998, Vienna/Austria and Budapest/Hungary},
series = {books@ocg.at},
volume = {117},
pages = {27--30},
publisher = {Austrian Computer Society},
year = {1998},
timestamp = {Wed, 23 Feb 2005 08:46:34 +0100},
biburl = {https://dblp.org/rec/conf/ifip/Vingron98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LenhofRV98,
author = {Hans{-}Peter Lenhof and
Knut Reinert and
Martin Vingron},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A polyhedral approach to {RNA} sequence structure alignment},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {153--162},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279109},
doi = {10.1145/279069.279109},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LenhofRV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/VingronH97,
author = {Martin Vingron and
Arndt von Haeseler},
title = {Towards Integration of Multiple Alignment and Phylogenetic Tree Construction},
journal = {J. Comput. Biol.},
volume = {4},
number = {1},
pages = {23--34},
year = {1997},
url = {https://doi.org/10.1089/cmb.1997.4.23},
doi = {10.1089/CMB.1997.4.23},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/VingronH97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SchwikowskiV97,
author = {Benno Schwikowski and
Martin Vingron},
title = {The Deferred Path Heuristic for the Generalized Tree Alignment Problem},
journal = {J. Comput. Biol.},
volume = {4},
number = {3},
pages = {415--431},
year = {1997},
url = {https://doi.org/10.1089/cmb.1997.4.415},
doi = {10.1089/CMB.1997.4.415},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SchwikowskiV97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/YuanEVB97,
author = {Yan P. Yuan and
Oliver Eulenstein and
Martin Vingron and
Peer Bork},
title = {Towards detection of sequence orthologs},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997,
Kloster Irsee, Bavaria, Germany, September 1997},
pages = {25--30},
publisher = {Oxford University Press},
year = {1997},
timestamp = {Fri, 02 Aug 2019 15:48:15 +0200},
biburl = {https://dblp.org/rec/conf/gcb/YuanEVB97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SpangV97,
author = {Rainer Spang and
Martin Vingron},
title = {Statistics of large scale sequence searching},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997,
Kloster Irsee, Bavaria, Germany, September 1997},
pages = {33--35},
publisher = {Oxford University Press},
year = {1997},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/SpangV97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchwikowskiV97,
author = {Benno Schwikowski and
Martin Vingron},
editor = {Michael S. Waterman},
title = {The deferred path heuristic for the generalized tree alignment problem},
booktitle = {Proceedings of the First Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1997, Santa Fe, NM, USA,
January 20-23, 1997},
pages = {257--266},
publisher = {{ACM}},
year = {1997},
url = {https://doi.org/10.1145/267521.267884},
doi = {10.1145/267521.267884},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SchwikowskiV97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/VingronW96,
author = {Martin Vingron and
Michael S. Waterman},
title = {Alignment Networks and Electrical Networks},
journal = {Discret. Appl. Math.},
volume = {71},
number = {1-3},
pages = {297--309},
year = {1996},
url = {https://doi.org/10.1016/S0166-218X(96)00070-4},
doi = {10.1016/S0166-218X(96)00070-4},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/VingronW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/EulensteinMV96,
author = {Oliver Eulenstein and
Boris G. Mirkin and
Martin Vingron},
editor = {Boris G. Mirkin and
Fred R. McMorris and
Fred S. Roberts and
Andrey Rzhetsky},
title = {Comparison of annotating duplication, tree mapping, and copying as
methods to compare gene trees with species trees},
booktitle = {Mathematical Hierarchies and Biology, Proceedings of a {DIMACS} Workshop,
November 13-15, 1996},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {37},
pages = {71--94},
publisher = {{DIMACS/AMS}},
year = {1996},
url = {https://doi.org/10.1090/dimacs/037/05},
doi = {10.1090/DIMACS/037/05},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/EulensteinMV96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SchwikowskiV96,
author = {Benno Schwikowski and
Martin Vingron},
editor = {Ralf Hofest{\"{a}}dt and
Thomas Lengauer and
Markus L{\"{o}}ffler and
Dietmar Schomburg},
title = {A Clustering Approach to Generalized Tree Alignment with Application
to Alu Repeats},
booktitle = {Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany,
September 30 - October 2, 1996, Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {1278},
pages = {115--124},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/BFb0033210},
doi = {10.1007/BFB0033210},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/gcb/SchwikowskiV96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SchwikowskiV96a,
author = {Benno Schwikowski and
Martin Vingron},
title = {Attacking Generalized tree Alignment by a Deferred Path Heuristic},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1996,
Leipzig, Germany, September 30 - October 2, 1996},
pages = {302--304},
year = {1996},
timestamp = {Sat, 07 Sep 2019 11:59:23 +0200},
biburl = {https://dblp.org/rec/conf/gcb/SchwikowskiV96a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/VingronP93,
author = {Martin Vingron and
Pavel A. Pevzner},
editor = {Alberto Apostolico and
Maxime Crochemore and
Zvi Galil and
Udi Manber},
title = {Multiple Sequence Comparison and n-Dimensional Image Reconstruction},
booktitle = {Combinatorial Pattern Matching, 4th Annual Symposium, {CPM} 93, Padova,
Italy, June 2-4, 1993, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {684},
pages = {243--253},
publisher = {Springer},
year = {1993},
url = {https://doi.org/10.1007/BFb0029809},
doi = {10.1007/BFB0029809},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/VingronP93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RechidVA89,
author = {Renas Rechid and
Martin Vingron and
Patrick Argos},
title = {A new interactive protein sequence alignment program and comparison
of its results with widely used algorithms},
journal = {Comput. Appl. Biosci.},
volume = {5},
number = {2},
pages = {107--113},
year = {1989},
url = {https://doi.org/10.1093/bioinformatics/5.2.107},
doi = {10.1093/BIOINFORMATICS/5.2.107},
timestamp = {Fri, 01 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RechidVA89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VingronA89,
author = {Martin Vingron and
P. Argos},
title = {A fast and sensitive multiple sequence alignment algorithm},
journal = {Comput. Appl. Biosci.},
volume = {5},
number = {2},
pages = {115--121},
year = {1989},
url = {https://doi.org/10.1093/bioinformatics/5.2.115},
doi = {10.1093/BIOINFORMATICS/5.2.115},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VingronA89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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