BibTeX records: Brian Walenz

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@article{DBLP:journals/bioinformatics/JainRZCWKP20,
  author       = {Chirag Jain and
                  Arang Rhie and
                  Haowen Zhang and
                  Claudia Chu and
                  Brian Walenz and
                  Sergey Koren and
                  Adam M. Phillippy},
  title        = {Weighted minimizer sampling improves long read mapping},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {Supplement-1},
  pages        = {i111--i118},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa435},
  doi          = {10.1093/BIOINFORMATICS/BTAA435},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JainRZCWKP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/GhuryeRWSSPPK19,
  author       = {Jay Ghurye and
                  Arang Rhie and
                  Brian Walenz and
                  Anthony D. Schmitt and
                  Siddarth Selvaraj and
                  Mihai Pop and
                  Adam M. Phillippy and
                  Sergey Koren},
  title        = {Integrating Hi-C links with assembly graphs for chromosome-scale assembly},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {8},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1007273},
  doi          = {10.1371/JOURNAL.PCBI.1007273},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/GhuryeRWSSPPK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/WalenzF11,
  author       = {Brian Walenz and
                  Liliana Florea},
  title        = {Sim4db and Leaff: utilities for fast batch spliced alignment and sequence
                  indexing},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {13},
  pages        = {1869--1870},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr285},
  doi          = {10.1093/BIOINFORMATICS/BTR285},
  timestamp    = {Tue, 08 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalenzF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/KorenMWS10,
  author       = {Sergey Koren and
                  Jason R. Miller and
                  Brian Walenz and
                  Granger G. Sutton},
  title        = {An algorithm for automated closure during assembly},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {457},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-457},
  doi          = {10.1186/1471-2105-11-457},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KorenMWS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DenisovWHMALS08,
  author       = {Gennady Denisov and
                  Brian Walenz and
                  Aaron L. Halpern and
                  Jason R. Miller and
                  Nelson Axelrod and
                  Samuel Levy and
                  Granger G. Sutton},
  title        = {Consensus generation and variant detection by Celera Assembler},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {8},
  pages        = {1035--1040},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn074},
  doi          = {10.1093/BIOINFORMATICS/BTN074},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DenisovWHMALS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/MillerDKVWBJLMS08,
  author       = {Jason R. Miller and
                  Arthur L. Delcher and
                  Sergey Koren and
                  Eli Venter and
                  Brian Walenz and
                  Anushka Brownley and
                  Justin Johnson and
                  Kelvin Li and
                  Clark M. Mobarry and
                  Granger G. Sutton},
  title        = {Aggressive assembly of pyrosequencing reads with mates},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {24},
  pages        = {2818--2824},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn548},
  doi          = {10.1093/BIOINFORMATICS/BTN548},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MillerDKVWBJLMS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/DewWS05,
  author       = {Ian M. Dew and
                  Brian Walenz and
                  Granger G. Sutton},
  title        = {A Tool for Analyzing Mate Pairs in Assemblies {(TAMPA)}},
  journal      = {J. Comput. Biol.},
  volume       = {12},
  number       = {5},
  pages        = {497--513},
  year         = {2005},
  url          = {https://doi.org/10.1089/cmb.2005.12.497},
  doi          = {10.1089/CMB.2005.12.497},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/DewWS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/LippertMW05,
  author       = {Ross A. Lippert and
                  Clark M. Mobarry and
                  Brian Walenz},
  title        = {A Space-Efficient Construction of the Burrows-Wheeler Transform for
                  Genomic Data},
  journal      = {J. Comput. Biol.},
  volume       = {12},
  number       = {7},
  pages        = {943--951},
  year         = {2005},
  url          = {https://doi.org/10.1089/cmb.2005.12.943},
  doi          = {10.1089/CMB.2005.12.943},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/LippertMW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/CapraraCILW04,
  author       = {Alberto Caprara and
                  Robert D. Carr and
                  Sorin Istrail and
                  Giuseppe Lancia and
                  Brian Walenz},
  title        = {1001 Optimal {PDB} Structure Alignments: Integer Programming Methods
                  for Finding the Maximum Contact Map Overlap},
  journal      = {J. Comput. Biol.},
  volume       = {11},
  number       = {1},
  pages        = {27--52},
  year         = {2004},
  url          = {https://doi.org/10.1089/106652704773416876},
  doi          = {10.1089/106652704773416876},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/CapraraCILW04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/pvg/TurnerCEFHHKMRRSWYI01,
  author       = {Russell J. Turner and
                  Kabir Chaturvedi and
                  Nathan Edwards and
                  Daniel P. Fasulo and
                  Aaron L. Halpern and
                  Daniel H. Huson and
                  Oliver Kohlbacher and
                  Jason R. Miller and
                  Knut Reinert and
                  Karin A. Remington and
                  Russell Schwartz and
                  Brian Walenz and
                  Shibu Yooseph and
                  Sorin Istrail},
  editor       = {David E. Breen and
                  Alan Heirich and
                  Anton H. J. Koning},
  title        = {Visualization challenges for a new cyberpharmaceutical computing paradigm},
  booktitle    = {Proceedings of the {IEEE} 2001 Symposium on Parallel and Large-Data
                  Visualization and Graphics, {PVG} 2001, San Diego, California, USA,
                  October 22-23, 2001},
  pages        = {7--18},
  publisher    = {{IEEE}},
  year         = {2001},
  url          = {https://dl.acm.org/doi/10.5555/502125.502127},
  doi          = {10.5555/502125.502127},
  timestamp    = {Thu, 02 Jun 2022 12:38:21 +0200},
  biburl       = {https://dblp.org/rec/conf/pvg/TurnerCEFHHKMRRSWYI01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/LanciaCWI01,
  author       = {Giuseppe Lancia and
                  Robert D. Carr and
                  Brian Walenz and
                  Sorin Istrail},
  editor       = {Thomas Lengauer},
  title        = {101 optimal {PDB} structure alignments: a branch-and-cut algorithm
                  for the maximum contact map overlap problem},
  booktitle    = {Proceedings of the Fifth Annual International Conference on Computational
                  Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
                  April 22-25, 2001},
  pages        = {193--202},
  publisher    = {{ACM}},
  year         = {2001},
  url          = {https://doi.org/10.1145/369133.369199},
  doi          = {10.1145/369133.369199},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LanciaCWI01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/soda/GoldmanILPW00,
  author       = {Deborah Goldman and
                  Sorin Istrail and
                  Giuseppe Lancia and
                  Antonio Piccolboni and
                  Brian Walenz},
  editor       = {David B. Shmoys},
  title        = {Algorithmic strategies in combinatorial chemistry},
  booktitle    = {Proceedings of the Eleventh Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, January 9-11, 2000, San Francisco, CA, {USA}},
  pages        = {275--284},
  publisher    = {{ACM/SIAM}},
  year         = {2000},
  url          = {http://dl.acm.org/citation.cfm?id=338219.338263},
  timestamp    = {Fri, 07 Dec 2012 17:02:08 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/GoldmanILPW00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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