BibTeX records: Jean Y. H. Yang

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@article{DBLP:journals/bib/HaoZZCWCSYWSZWCZ23,
  author       = {Jie Hao and
                  Jiawei Zou and
                  Jiaqiang Zhang and
                  Ke Chen and
                  Duojiao Wu and
                  Wei Cao and
                  Guoguo Shang and
                  Jean Yee Hwa Yang and
                  KongFatt Wong{-}Lin and
                  Hourong Sun and
                  Zhen Zhang and
                  Xiangdong Wang and
                  Wantao Chen and
                  Xin Zou},
  title        = {scSTAR reveals hidden heterogeneity with a real-virtual cell pair
                  structure across conditions in single-cell {RNA} sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {2},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad062},
  doi          = {10.1093/BIB/BBAD062},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HaoZZCWCSYWSZWCZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/CaoGYY23,
  author       = {Yue Cao and
                  Shila Ghazanfar and
                  Pengyi Yang and
                  Jean Y. H. Yang},
  title        = {Benchmarking of analytical combinations for {COVID-19} outcome prediction
                  using single-cell {RNA} sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {3},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbad159},
  doi          = {10.1093/BIB/BBAD159},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/CaoGYY23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cbm/FuPYFK23,
  author       = {Xiaohang Fu and
                  Ellis Patrick and
                  Jean Y. H. Yang and
                  David Dagan Feng and
                  Jinman Kim},
  title        = {Deep multimodal graph-based network for survival prediction from highly
                  multiplexed images and patient variables},
  journal      = {Comput. Biol. Medicine},
  volume       = {154},
  pages        = {106576},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.compbiomed.2023.106576},
  doi          = {10.1016/J.COMPBIOMED.2023.106576},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/FuPYFK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/CaoLPYY22,
  author       = {Yue Cao and
                  Yingxin Lin and
                  Ellis Patrick and
                  Pengyi Yang and
                  Jean Yee Hwa Yang},
  title        = {scFeatures: multi-view representations of single-cell and spatial
                  data for disease outcome prediction},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {20},
  pages        = {4745--4753},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac590},
  doi          = {10.1093/BIOINFORMATICS/BTAC590},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CaoLPYY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/CooreyFFSVWGMYQ22,
  author       = {Genevieve Coorey and
                  Gemma A. Figtree and
                  David F. Fletcher and
                  Victoria J. Snelson and
                  Stephen T. Vernon and
                  David Winlaw and
                  Stuart M. Grieve and
                  Alistair Lee McEwan and
                  Jean Yee Hwa Yang and
                  Pierre Qian and
                  Kieran O'Brien and
                  Jessica Orchard and
                  Jinman Kim and
                  Sanjay Patel and
                  Julie Redfern},
  title        = {The health digital twin to tackle cardiovascular disease - a review
                  of an emerging interdisciplinary field},
  journal      = {npj Digit. Medicine},
  volume       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1038/s41746-022-00640-7},
  doi          = {10.1038/S41746-022-00640-7},
  timestamp    = {Sat, 27 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/CooreyFFSVWGMYQ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/WangPTPSSTS0TMY22,
  author       = {Kevin Y. X. Wang and
                  Gulietta M. Pupo and
                  Varsha Tembe and
                  Ellis Patrick and
                  Dario Strbenac and
                  Sarah{-}Jane Schramm and
                  John F. Thompson and
                  Richard A. Scolyer and
                  Samuel M{\"{u}}ller and
                  Garth Tarr and
                  Graham J. Mann and
                  Jean Yee Hwa Yang},
  title        = {Cross-Platform Omics Prediction procedure: a statistical machine learning
                  framework for wider implementation of precision medicine},
  journal      = {npj Digit. Medicine},
  volume       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1038/s41746-022-00618-5},
  doi          = {10.1038/S41746-022-00618-5},
  timestamp    = {Sun, 16 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/WangPTPSSTS0TMY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/LinLTLMHNY22,
  author       = {Yingxin Lin and
                  Lipin Loo and
                  Andy Tran and
                  David M. Lin and
                  Cesar Moreno and
                  Daniel Hesselson and
                  G. Gregory Neely and
                  Jean Y. H. Yang},
  title        = {Scalable workflow for characterization of cell-cell communication
                  in {COVID-19} patients},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {10},
  pages        = {1010495},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1010495},
  doi          = {10.1371/JOURNAL.PCBI.1010495},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/LinLTLMHNY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ncs/KimWCLTLYY21,
  author       = {Hani Jieun Kim and
                  Kevin Y. X. Wang and
                  Carissa Chen and
                  Yingxin Lin and
                  Patrick P. L. Tam and
                  David M. Lin and
                  Jean Y. H. Yang and
                  Pengyi Yang},
  title        = {Uncovering cell identity through differential stability with Cepo},
  journal      = {Nat. Comput. Sci.},
  volume       = {1},
  number       = {12},
  pages        = {784--790},
  year         = {2021},
  url          = {https://doi.org/10.1038/s43588-021-00172-2},
  doi          = {10.1038/S43588-021-00172-2},
  timestamp    = {Mon, 15 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ncs/KimWCLTLYY21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2104-11364,
  author       = {Anne E. Carpenter and
                  Casey S. Greene and
                  Piero Carnici and
                  Benilton S. Carvalho and
                  Michiel de Hoon and
                  Stacey D. Finley and
                  Kim{-}Anh L{\^{e}} Cao and
                  Jerry S. H. Lee and
                  Luigi Marchionni and
                  Suzanne Sindi and
                  Fabian J. Theis and
                  Gregory P. Way and
                  Jean Y. H. Yang and
                  Elana J. Fertig},
  title        = {A field guide to cultivating computational biology},
  journal      = {CoRR},
  volume       = {abs/2104.11364},
  year         = {2021},
  url          = {https://arxiv.org/abs/2104.11364},
  eprinttype    = {arXiv},
  eprint       = {2104.11364},
  timestamp    = {Fri, 06 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2104-11364.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KimLGYY20,
  author       = {Hani Jieun Kim and
                  Yingxin Lin and
                  Thomas Andrew Geddes and
                  Jean Yee Hwa Yang and
                  Pengyi Yang},
  title        = {CiteFuse enables multi-modal analysis of CITE-seq data},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {14},
  pages        = {4137--4143},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa282},
  doi          = {10.1093/BIOINFORMATICS/BTAA282},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KimLGYY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/XuSSRSFMY20,
  author       = {Xiangnan Xu and
                  Samantha Solon{-}Biet and
                  Alistair M. Senior and
                  David Raubenheimer and
                  Stephen J. Simpson and
                  Luigi Fontana and
                  Samuel M{\"{u}}ller and
                  Jean Yee Hwa Yang},
  title        = {{LC-N2G:} a local consistency approach for nutrigenomics data analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {21},
  number       = {1},
  pages        = {530},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12859-020-03861-3},
  doi          = {10.1186/S12859-020-03861-3},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/XuSSRSFMY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/natmi/CaoGYY20,
  author       = {Yue Cao and
                  Thomas Andrew Geddes and
                  Jean Yee Hwa Yang and
                  Pengyi Yang},
  title        = {Ensemble deep learning in bioinformatics},
  journal      = {Nat. Mach. Intell.},
  volume       = {2},
  number       = {9},
  pages        = {500--508},
  year         = {2020},
  url          = {https://doi.org/10.1038/s42256-020-0217-y},
  doi          = {10.1038/S42256-020-0217-Y},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/natmi/CaoGYY20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/KimCLWYY19,
  author       = {Taiyun Kim and
                  Irene Rui Chen and
                  Yingxin Lin and
                  Andy Yi{-}Yang Wang and
                  Jean Yee Hwa Yang and
                  Pengyi Yang},
  title        = {Impact of similarity metrics on single-cell RNA-seq data clustering},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {6},
  pages        = {2316--2326},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bby076},
  doi          = {10.1093/BIB/BBY076},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KimCLWYY19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/GhazanfarSOYP19,
  author       = {Shila Ghazanfar and
                  Dario Strbenac and
                  John T. Ormerod and
                  Jean Yee Hwa Yang and
                  Ellis Patrick},
  title        = {{DCARS:} differential correlation across ranked samples},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {5},
  pages        = {823--829},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty698},
  doi          = {10.1093/BIOINFORMATICS/BTY698},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GhazanfarSOYP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/WangMSWYWKSLTMY19,
  author       = {Kevin Y. X. Wang and
                  Alexander M. Menzies and
                  Ines P. Silva and
                  James S. Wilmott and
                  Yibing Yan and
                  Matthew Wongchenko and
                  Richard F. Kefford and
                  Richard A. Scolyer and
                  Georgina V. Long and
                  Garth Tarr and
                  Samuel M{\"{u}}ller and
                  Jean Yee Hwa Yang},
  title        = {bcGST - an interactive bias-correction method to identify over-represented
                  gene-sets in boutique arrays},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {8},
  pages        = {1350--1357},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty783},
  doi          = {10.1093/BIOINFORMATICS/BTY783},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangMSWYWKSLTMY19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/GeddesKNBYTY19,
  author       = {Thomas Andrew Geddes and
                  Taiyun Kim and
                  Lihao Nan and
                  James G. Burchfield and
                  Jean Yee Hwa Yang and
                  Dacheng Tao and
                  Pengyi Yang},
  title        = {Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {20-S},
  number       = {19},
  pages        = {660},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3179-5},
  doi          = {10.1186/S12859-019-3179-5},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GeddesKNBYTY19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/CaoLOYYL19,
  author       = {Yue Cao and
                  Yingxin Lin and
                  John T. Ormerod and
                  Pengyi Yang and
                  Jean Yee Hwa Yang and
                  Kitty K. Lo},
  title        = {scDC: single cell differential composition analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {20-S},
  number       = {19},
  pages        = {721},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3211-9},
  doi          = {10.1186/S12859-019-3211-9},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CaoLOYYL19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ni/RidderKYYLHBK19,
  author       = {Michael de Ridder and
                  Karsten Klein and
                  Jean Yee Hwa Yang and
                  Pengyi Yang and
                  Jim Lagopoulos and
                  Ian B. Hickie and
                  Max Bennett and
                  Jinman Kim},
  title        = {An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity},
  journal      = {Neuroinformatics},
  volume       = {17},
  number       = {2},
  pages        = {211--223},
  year         = {2019},
  url          = {https://doi.org/10.1007/s12021-018-9395-8},
  doi          = {10.1007/S12021-018-9395-8},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ni/RidderKYYLHBK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcyb/YangOLMZY19,
  author       = {Pengyi Yang and
                  John T. Ormerod and
                  Wei Liu and
                  Chendong Ma and
                  Albert Y. Zomaya and
                  Jean Yee Hwa Yang},
  title        = {AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics
                  Applications},
  journal      = {{IEEE} Trans. Cybern.},
  volume       = {49},
  number       = {5},
  pages        = {1932--1943},
  year         = {2019},
  url          = {https://doi.org/10.1109/TCYB.2018.2816984},
  doi          = {10.1109/TCYB.2018.2816984},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcyb/YangOLMZY19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/apvis/Jaeger0JZRKYPRS19,
  author       = {Sabrina Jaeger and
                  Karsten Klein and
                  Lucas Joos and
                  Johannes Zagermann and
                  Michael de Ridder and
                  Jinman Kim and
                  Jean Yee Hwa Yang and
                  Ulrike Pfeil and
                  Harald Reiterer and
                  Falk Schreiber},
  title        = {Challenges for Brain Data Analysis in {VR} Environments},
  booktitle    = {{IEEE} Pacific Visualization Symposium, PacificVis 2019, Bangkok,
                  Thailand, April 23-26, 2019},
  pages        = {42--46},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/PacificVis.2019.00013},
  doi          = {10.1109/PACIFICVIS.2019.00013},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/apvis/Jaeger0JZRKYPRS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1807-01422,
  author       = {Sarah Elizabeth Romanes and
                  John Thomas Ormerod and
                  Jean Yee Hwa Yang},
  title        = {Diagonal Discriminant Analysis with Feature Selection for High Dimensional
                  Data},
  journal      = {CoRR},
  volume       = {abs/1807.01422},
  year         = {2018},
  url          = {http://arxiv.org/abs/1807.01422},
  eprinttype    = {arXiv},
  eprint       = {1807.01422},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1807-01422.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/YangOKYYH17,
  author       = {Pengyi Yang and
                  Andrew J. Oldfield and
                  Taiyun Kim and
                  Andrian Yang and
                  Jean Yee Hwa Yang and
                  Joshua Wing Kei Ho},
  title        = {Integrative analysis identifies co-dependent gene expression regulation
                  of {BRG1} and {CHD7} at distal regulatory sites in embryonic stem
                  cells},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {13},
  pages        = {1916--1920},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx092},
  doi          = {10.1093/BIOINFORMATICS/BTX092},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangOKYYH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ijcai/YangLY17,
  author       = {Pengyi Yang and
                  Wei Liu and
                  Jean Yee Hwa Yang},
  editor       = {Carles Sierra},
  title        = {Positive unlabeled learning via wrapper-based adaptive sampling},
  booktitle    = {Proceedings of the Twenty-Sixth International Joint Conference on
                  Artificial Intelligence, {IJCAI} 2017, Melbourne, Australia, August
                  19-25, 2017},
  pages        = {3273--3279},
  publisher    = {ijcai.org},
  year         = {2017},
  url          = {https://doi.org/10.24963/ijcai.2017/457},
  doi          = {10.24963/IJCAI.2017/457},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/YangLY17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/YangHJYJ16,
  author       = {Pengyi Yang and
                  Sean J. Humphrey and
                  David E. James and
                  Yee Hwa Yang and
                  Raja Jothi},
  title        = {Positive-unlabeled ensemble learning for kinase substrate prediction
                  from dynamic phosphoproteomics data},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {2},
  pages        = {252--259},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv550},
  doi          = {10.1093/BIOINFORMATICS/BTV550},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangHJYJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcsb/GhazanfarBOLY16,
  author       = {Shila Ghazanfar and
                  Adam J. Bisogni and
                  John T. Ormerod and
                  David M. Lin and
                  Jean Yee Hwa Yang},
  title        = {Integrated single cell data analysis reveals cell specific networks
                  and novel coactivation markers},
  journal      = {{BMC} Syst. Biol.},
  volume       = {10},
  number       = {{S-5}},
  pages        = {11--24},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12918-016-0370-4},
  doi          = {10.1186/S12918-016-0370-4},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/GhazanfarBOLY16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/GhazanfarY16,
  author       = {Shila Ghazanfar and
                  Jean Yee Hwa Yang},
  title        = {Characterizing mutation-expression network relationships in multiple
                  cancers},
  journal      = {Comput. Biol. Chem.},
  volume       = {63},
  pages        = {73--82},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.compbiolchem.2016.02.009},
  doi          = {10.1016/J.COMPBIOLCHEM.2016.02.009},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/GhazanfarY16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/StrbenacMOY15,
  author       = {Dario Strbenac and
                  Graham J. Mann and
                  John T. Ormerod and
                  Jean Yee Hwa Yang},
  title        = {ClassifyR: an {R} package for performance assessment of classification
                  with applications to transcriptomics},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {11},
  pages        = {1851--1853},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv066},
  doi          = {10.1093/BIOINFORMATICS/BTV066},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/StrbenacMOY15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/PatrickBMLY15,
  author       = {Ellis Patrick and
                  Michael J. Buckley and
                  Samuel M{\"{u}}ller and
                  David M. Lin and
                  Jean Yee Hwa Yang},
  title        = {Inferring data-specific micro-RNA function through the joint ranking
                  of micro-RNA and pathways from matched micro-RNA and gene expression
                  data},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {17},
  pages        = {2822--2828},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv220},
  doi          = {10.1093/BIOINFORMATICS/BTV220},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PatrickBMLY15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/YangZJHYJ15,
  author       = {Pengyi Yang and
                  Xiaofeng Zheng and
                  Vivek Jayaswal and
                  Guang Hu and
                  Jean Yee Hwa Yang and
                  Raja Jothi},
  title        = {Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series
                  Phosphoproteomics Data},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {8},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004403},
  doi          = {10.1371/JOURNAL.PCBI.1004403},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/YangZJHYJ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/YangPTFBGPJY14,
  author       = {Pengyi Yang and
                  Ellis Patrick and
                  Shi{-}Xiong Tan and
                  Daniel J. Fazakerley and
                  James G. Burchfield and
                  Christopher Gribben and
                  Matthew J. Prior and
                  David E. James and
                  Yee Hwa Yang},
  title        = {Direction pathway analysis of large-scale proteomics data reveals
                  novel features of the insulin action pathway},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {6},
  pages        = {808--814},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt616},
  doi          = {10.1093/BIOINFORMATICS/BTT616},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangPTFBGPJY14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcsb/BarterSMY14,
  author       = {Rebecca L. Barter and
                  Sarah{-}Jane Schramm and
                  Graham J. Mann and
                  Yee Hwa Yang},
  title        = {Network-based biomarkers enhance classical approaches to prognostic
                  gene expression signatures},
  journal      = {{BMC} Syst. Biol.},
  volume       = {8},
  number       = {{S-4}},
  pages        = {S5},
  year         = {2014},
  url          = {https://doi.org/10.1186/1752-0509-8-S4-S5},
  doi          = {10.1186/1752-0509-8-S4-S5},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/BarterSMY14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/PatrickBY13,
  author       = {Ellis Patrick and
                  Michael J. Buckley and
                  Yee Hwa Yang},
  title        = {Estimation of data-specific constitutive exons with RNA-Seq data},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {31},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-31},
  doi          = {10.1186/1471-2105-14-31},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PatrickBY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcgenomics/PatrickBLY13,
  author       = {Ellis Patrick and
                  Michael J. Buckley and
                  David M. Lin and
                  Yee Hwa Yang},
  title        = {Improved moderation for gene-wise variance estimation in RNA-Seq via
                  the exploitation of external information},
  journal      = {{BMC} Genom.},
  volume       = {14},
  number       = {{S-1}},
  pages        = {S9},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2164-14-S1-S9},
  doi          = {10.1186/1471-2164-14-S1-S9},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcgenomics/PatrickBLY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bibm/WangYRZW13,
  author       = {Penghao Wang and
                  Jean Yee Hwa Yang and
                  Mark Raftery and
                  Ling Zhong and
                  Susan R. Wilson},
  editor       = {Guo{-}Zheng Li and
                  Sunghoon Kim and
                  Michael Hughes and
                  Geoffrey J. McLachlan and
                  Hongye Sun and
                  Xiaohua Hu and
                  Habtom W. Ressom and
                  Baoyan Liu and
                  Michael N. Liebman},
  title        = {Latin square dataset for evaluating the accuracy of mass spectrometry-based
                  protein identification and quantification},
  booktitle    = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
                  Shanghai, China, December 18-21, 2013},
  pages        = {65--67},
  publisher    = {{IEEE} Computer Society},
  year         = {2013},
  url          = {https://doi.org/10.1109/BIBM.2013.6732765},
  doi          = {10.1109/BIBM.2013.6732765},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibm/WangYRZW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/WangYY12,
  author       = {Penghao Wang and
                  Pengyi Yang and
                  Jean Yee Hwa Yang},
  title        = {{OCAP:} an open comprehensive analysis pipeline for iTRAQ},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {10},
  pages        = {1404--1405},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts150},
  doi          = {10.1093/BIOINFORMATICS/BTS150},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangYY12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/YangMWZZY12,
  author       = {Pengyi Yang and
                  Jie Ma and
                  Penghao Wang and
                  Yunping Zhu and
                  Bing Bing Zhou and
                  Jean Yee Hwa Yang},
  title        = {Improving X!Tandem on Peptide Identification from Mass Spectrometry
                  by Self-Boosted Percolator},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {9},
  number       = {5},
  pages        = {1273--1280},
  year         = {2012},
  url          = {https://doi.org/10.1109/TCBB.2012.86},
  doi          = {10.1109/TCBB.2012.86},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/YangMWZZY12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/YangHYZ11,
  author       = {Pengyi Yang and
                  Joshua Wing Kei Ho and
                  Jean Yee Hwa Yang and
                  Bing Bing Zhou},
  title        = {Gene-gene interaction filtering with ensemble of filters},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  number       = {{S-1}},
  pages        = {S10},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-S1-S10},
  doi          = {10.1186/1471-2105-12-S1-S10},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/YangHYZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/PetersBLYM11,
  author       = {Tim Peters and
                  David W. Bulger and
                  To{-}ha Loi and
                  Jean Yee Hwa Yang and
                  David Ma},
  title        = {Two-Step Cross-Entropy Feature Selection for Microarrays - Power Through
                  Complementarity},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {8},
  number       = {4},
  pages        = {1148--1151},
  year         = {2011},
  url          = {https://doi.org/10.1109/TCBB.2011.30},
  doi          = {10.1109/TCBB.2011.30},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/PetersBLYM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/WangYAY10,
  author       = {Penghao Wang and
                  Pengyi Yang and
                  Jonathan Arthur and
                  Jean Yee Hwa Yang},
  title        = {A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry
                  data},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {18},
  pages        = {2242--2249},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq403},
  doi          = {10.1093/BIOINFORMATICS/BTQ403},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangYAY10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/CampainY10,
  author       = {Anna Campain and
                  Yee Hwa Yang},
  title        = {Comparison study of microarray meta-analysis methods},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {408},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-408},
  doi          = {10.1186/1471-2105-11-408},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CampainY10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/XiaoSYY07,
  author       = {Yuanyuan Xiao and
                  Mark R. Segal and
                  Yee Hwa Yang and
                  Ru{-}Fang Yeh},
  title        = {A multi-array multi-SNP genotyping algorithm for Affymetrix {SNP}
                  microarrays},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {12},
  pages        = {1459--1467},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm131},
  doi          = {10.1093/BIOINFORMATICS/BTM131},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XiaoSYY07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/YangXS05,
  author       = {Yee Hwa Yang and
                  Yuanyuan Xiao and
                  Mark R. Segal},
  title        = {Identifying differentially expressed genes from microarray experiments
                  via statistic synthesis},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {7},
  pages        = {1084--1093},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti108},
  doi          = {10.1093/BIOINFORMATICS/BTI108},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangXS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/XiaoYBSHS05,
  author       = {Yuanyuan Xiao and
                  Yee Hwa Yang and
                  Todd A. Burckin and
                  Lily Shiue and
                  Grant A. Hartzog and
                  Mark R. Segal},
  title        = {Analysis of a Splice Array Experiment Elucidates Roles of Chromatin
                  Elongation Factor Spt4-5 in Splicing},
  journal      = {PLoS Comput. Biol.},
  volume       = {1},
  number       = {4},
  year         = {2005},
  url          = {https://doi.org/10.1371/journal.pcbi.0010039},
  doi          = {10.1371/JOURNAL.PCBI.0010039},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/XiaoYBSHS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/YangBS01,
  author       = {Yee Hwa Yang and
                  Michael J. Buckley and
                  Terence P. Speed},
  title        = {Analysis of {CDNA} Microarray Images},
  journal      = {Briefings Bioinform.},
  volume       = {2},
  number       = {4},
  pages        = {341--349},
  year         = {2001},
  url          = {https://doi.org/10.1093/bib/2.4.341},
  doi          = {10.1093/BIB/2.4.341},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YangBS01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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