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BibTeX records: Ruochi Zhang
@article{DBLP:journals/corr/abs-2401-11360, author = {Ruochi Zhang and Haoran Wu and Chang Liu and Huaping Li and Yuqian Wu and Kewei Li and Yifan Wang and Yifan Deng and Jiahui Chen and Fengfeng Zhou and Xin Gao}, title = {PepHarmony: {A} Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding}, journal = {CoRR}, volume = {abs/2401.11360}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2401.11360}, doi = {10.48550/ARXIV.2401.11360}, eprinttype = {arXiv}, eprint = {2401.11360}, timestamp = {Tue, 09 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2401-11360.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DuanWZLZLZHZZ23, author = {Meiyu Duan and Yueying Wang and Dong Zhao and Hongmei Liu and Gongyou Zhang and Kewei Li and Haotian Zhang and Lan Huang and Ruochi Zhang and Fengfeng Zhou}, title = {Orchestrating information across tissues via a novel multitask {GAT} framework to improve quantitative gene regulation relation modeling for survival analysis}, journal = {Briefings Bioinform.}, volume = {24}, number = {4}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad238}, doi = {10.1093/BIB/BBAD238}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/DuanWZLZLZHZZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/WangZZGZZMYHLFHZ23, author = {Yan Wang and Ruochi Zhang and Shengde Zhang and Liming Guo and Qiong Zhou and Bowen Zhao and Xiaotong Mo and Qian Yang and Yajuan Huang and Kewei Li and Yusi Fan and Lan Huang and Fengfeng Zhou}, title = {{OCMR:} {A} comprehensive framework for optical chemical molecular recognition}, journal = {Comput. Biol. Medicine}, volume = {163}, pages = {107187}, year = {2023}, url = {https://doi.org/10.1016/j.compbiomed.2023.107187}, doi = {10.1016/J.COMPBIOMED.2023.107187}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/WangZZGZZMYHLFHZ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-04419, author = {Ruochi Zhang and Haoran Wu and Yuting Xiu and Kewei Li and Ningning Chen and Yu Wang and Yan Wang and Xin Gao and Fengfeng Zhou}, title = {PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids}, journal = {CoRR}, volume = {abs/2311.04419}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.04419}, doi = {10.48550/ARXIV.2311.04419}, eprinttype = {arXiv}, eprint = {2311.04419}, timestamp = {Thu, 16 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-04419.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/ZhangZM22, author = {Ruochi Zhang and Tianming Zhou and Jian Ma}, editor = {Itsik Pe'er}, title = {Ultrafast and Interpretable Single-Cell 3D Genome Analysis with Fast-Higashi}, booktitle = {Research in Computational Molecular Biology - 26th Annual International Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13278}, pages = {300--301}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-04749-7\_19}, doi = {10.1007/978-3-031-04749-7\_19}, timestamp = {Wed, 18 May 2022 18:07:47 +0200}, biburl = {https://dblp.org/rec/conf/recomb/ZhangZM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/DengCZLWZ21, author = {Daiguo Deng and Xiaowei Chen and Ruochi Zhang and Zengrong Lei and Xiaojian Wang and Fengfeng Zhou}, title = {XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties}, journal = {J. Chem. Inf. Model.}, volume = {61}, number = {6}, pages = {2697--2705}, year = {2021}, url = {https://doi.org/10.1021/acs.jcim.0c01489}, doi = {10.1021/ACS.JCIM.0C01489}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/DengCZLWZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/DengCZLWZ21a, author = {Daiguo Deng and Xiaowei Chen and Ruochi Zhang and Zengrong Lei and Xiaojian Wang and Fengfeng Zhou}, title = {Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties"}, journal = {J. Chem. Inf. Model.}, volume = {61}, number = {9}, pages = {4820--4822}, year = {2021}, url = {https://doi.org/10.1021/acs.jcim.1c00966}, doi = {10.1021/ACS.JCIM.1C00966}, timestamp = {Wed, 03 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/DengCZLWZ21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcns/ZhangV20, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {False Data Injection and Detection in {LQG} Systems: {A} Game Theoretic Approach}, journal = {{IEEE} Trans. Control. Netw. Syst.}, volume = {7}, number = {1}, pages = {338--348}, year = {2020}, url = {https://doi.org/10.1109/TCNS.2019.2910459}, doi = {10.1109/TCNS.2019.2910459}, timestamp = {Thu, 09 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcns/ZhangV20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tsp/ZhangV20, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Optimal Local Differentially Private Quantization}, journal = {{IEEE} Trans. Signal Process.}, volume = {68}, pages = {6509--6520}, year = {2020}, url = {https://doi.org/10.1109/TSP.2020.3033483}, doi = {10.1109/TSP.2020.3033483}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tsp/ZhangV20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclr/ZhangZ020, author = {Ruochi Zhang and Yuesong Zou and Jian Ma}, title = {Hyper-SAGNN: a self-attention based graph neural network for hypergraphs}, booktitle = {8th International Conference on Learning Representations, {ICLR} 2020, Addis Ababa, Ethiopia, April 26-30, 2020}, publisher = {OpenReview.net}, year = {2020}, url = {https://openreview.net/forum?id=ryeHuJBtPH}, timestamp = {Thu, 07 May 2020 17:11:47 +0200}, biburl = {https://dblp.org/rec/conf/iclr/ZhangZ020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/Zhang020, author = {Ruochi Zhang and Jian Ma}, editor = {Russell Schwartz}, title = {Probing Multi-way Chromatin Interaction with Hypergraph Representation Learning}, booktitle = {Research in Computational Molecular Biology - 24th Annual International Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12074}, pages = {276--277}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-45257-5\_37}, doi = {10.1007/978-3-030-45257-5\_37}, timestamp = {Tue, 21 Apr 2020 12:14:30 +0200}, biburl = {https://dblp.org/rec/conf/recomb/Zhang020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1911-02613, author = {Ruochi Zhang and Yuesong Zou and Jian Ma}, title = {Hyper-SAGNN: a self-attention based graph neural network for hypergraphs}, journal = {CoRR}, volume = {abs/1911.02613}, year = {2019}, url = {http://arxiv.org/abs/1911.02613}, eprinttype = {arXiv}, eprint = {1911.02613}, timestamp = {Sat, 23 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1911-02613.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangWYZM18, author = {Ruochi Zhang and Yuchuan Wang and Yang Yang and Yang Zhang and Jian Ma}, title = {Predicting CTCF-mediated chromatin loops using {CTCF-MP}}, journal = {Bioinform.}, volume = {34}, number = {13}, pages = {i133--i141}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty248}, doi = {10.1093/BIOINFORMATICS/BTY248}, timestamp = {Sat, 25 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWYZM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZZWZFZ18, author = {Ruochi Zhang and Ruixue Zhao and Xinyang Zhao and Di Wu and Weiwei Zheng and Xin Feng and Fengfeng Zhou}, title = {pyHIVE, a health-related image visualization and engineering system using Python}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {452:1--452:6}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2477-7}, doi = {10.1186/S12859-018-2477-7}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZZWZFZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/ZhaoZTFLLZWLZYW18, author = {Ruixue Zhao and Ruochi Zhang and Tongyu Tang and Xin Feng and Jialiang Li and Yue Liu and Renxiang Zhu and Guangze Wang and Kangning Li and Wenyang Zhou and Yunfei Yang and Yuzhao Wang and Yuanjie Ba and Jiaojiao Zhang and Yang Liu and Fengfeng Zhou}, title = {TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis}, journal = {Comput. Biol. Medicine}, volume = {99}, pages = {182--190}, year = {2018}, url = {https://doi.org/10.1016/j.compbiomed.2018.06.006}, doi = {10.1016/J.COMPBIOMED.2018.06.006}, timestamp = {Mon, 22 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/ZhaoZTFLLZWLZYW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/allerton/ZhangV18, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Optimal Multi-Source Inference Privacy - {A} Generalized Lloyd-Max Algorithm}, booktitle = {56th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2018, Monticello, IL, USA, October 2-5, 2018}, pages = {219--226}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/ALLERTON.2018.8635890}, doi = {10.1109/ALLERTON.2018.8635890}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/allerton/ZhangV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/apsipa/ZhangV18, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Optimal Distribution Mapping for Inference Privacy}, booktitle = {Asia-Pacific Signal and Information Processing Association Annual Summit and Conference, {APSIPA} {ASC} 2018, Honolulu, HI, USA, November 12-15, 2018}, pages = {1179--1187}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.23919/APSIPA.2018.8659632}, doi = {10.23919/APSIPA.2018.8659632}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/apsipa/ZhangV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icassp/ZhangV18, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Mutual-Information-Private Online Gradient Descent Algorithm}, booktitle = {2018 {IEEE} International Conference on Acoustics, Speech and Signal Processing, {ICASSP} 2018, Calgary, AB, Canada, April 15-20, 2018}, pages = {2077--2081}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/ICASSP.2018.8461756}, doi = {10.1109/ICASSP.2018.8461756}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icassp/ZhangV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangZSM17, author = {Yang Yang and Ruochi Zhang and Shashank Singh and Jian Ma}, title = {Exploiting sequence-based features for predicting enhancer-promoter interactions}, journal = {Bioinform.}, volume = {33}, number = {14}, pages = {i252--i260}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx257}, doi = {10.1093/BIOINFORMATICS/BTX257}, timestamp = {Tue, 17 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangZSM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/GeMZWWZ17, author = {Ruiquan Ge and Guoqin Mai and Ruochi Zhang and Xundong Wu and Qing Wu and Fengfeng Zhou}, title = {MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs)}, journal = {J. Integr. Bioinform.}, volume = {14}, number = {3}, year = {2017}, url = {https://doi.org/10.1515/jib-2017-0029}, doi = {10.1515/JIB-2017-0029}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/GeMZWWZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tifs/ZhangV17, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Stealthy Control Signal Attacks in Linear Quadratic Gaussian Control Systems: Detectability Reward Tradeoff}, journal = {{IEEE} Trans. Inf. Forensics Secur.}, volume = {12}, number = {7}, pages = {1555--1570}, year = {2017}, url = {https://doi.org/10.1109/TIFS.2017.2668220}, doi = {10.1109/TIFS.2017.2668220}, timestamp = {Thu, 06 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tifs/ZhangV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cns/ZhangV17, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {A game theoretic approach to analyze false data injection and detection in {LQG} system}, booktitle = {2017 {IEEE} Conference on Communications and Network Security, {CNS} 2017, Las Vegas, NV, USA, October 9-11, 2017}, pages = {427--431}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/CNS.2017.8228704}, doi = {10.1109/CNS.2017.8228704}, timestamp = {Wed, 16 Oct 2019 14:14:55 +0200}, biburl = {https://dblp.org/rec/conf/cns/ZhangV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amcc/ZhangV16, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Stealthy control signal attacks in vector {LQG} systems}, booktitle = {2016 American Control Conference, {ACC} 2016, Boston, MA, USA, July 6-8, 2016}, pages = {1179--1184}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/ACC.2016.7525077}, doi = {10.1109/ACC.2016.7525077}, timestamp = {Wed, 16 Oct 2019 14:14:51 +0200}, biburl = {https://dblp.org/rec/conf/amcc/ZhangV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/globalsip/ZhangV15, author = {Ruochi Zhang and Parv Venkitasubramaniam}, title = {Stealthy control signal attacks in scalar {LQG} systems}, booktitle = {2015 {IEEE} Global Conference on Signal and Information Processing, GlobalSIP 2015, Orlando, FL, USA, December 14-16, 2015}, pages = {240--244}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/GlobalSIP.2015.7418193}, doi = {10.1109/GLOBALSIP.2015.7418193}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/globalsip/ZhangV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ipm/SongGZXWYH11, author = {Ruihua Song and Qingwei Guo and Ruochi Zhang and Guomao Xin and Ji{-}Rong Wen and Yong Yu and Hsiao{-}Wuen Hon}, title = {Select-the-Best-Ones: {A} new way to judge relative relevance}, journal = {Inf. Process. Manag.}, volume = {47}, number = {1}, pages = {37--52}, year = {2011}, url = {https://doi.org/10.1016/j.ipm.2010.02.005}, doi = {10.1016/J.IPM.2010.02.005}, timestamp = {Fri, 21 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ipm/SongGZXWYH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mdm/ZhengWZXM08, author = {Yu Zheng and Longhao Wang and Ruochi Zhang and Xing Xie and Wei{-}Ying Ma}, editor = {Xiaofeng Meng and Hui Lei and St{\'{e}}phane Grumbach and Hong Va Leong}, title = {GeoLife: Managing and Understanding Your Past Life over Maps}, booktitle = {9th International Conference on Mobile Data Management {(MDM} 2008), Beijing, China, April 27-30, 2008}, pages = {211--212}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/MDM.2008.20}, doi = {10.1109/MDM.2008.20}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/mdm/ZhengWZXM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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