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ORCIDBibTeX records: Chunfang Zheng
@article{DBLP:journals/jbcb/XuZZZLJS21,
author = {Qiaoji Xu and
Xiaomeng Zhang and
Yue Zhang and
Chunfang Zheng and
James H. Leebens{-}Mack and
Lingling Jin and
David Sankoff},
title = {The monoploid chromosome complement of reconstructed ancestral genomes
in a phylogeny},
journal = {J. Bioinform. Comput. Biol.},
volume = {19},
number = {6},
pages = {2140008:1--2140008:17},
year = {2021},
url = {https://doi.org/10.1142/S0219720021400084},
doi = {10.1142/S0219720021400084},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/XuZZZLJS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuJZZZLS21,
author = {Qiaoji Xu and
Lingling Jin and
Yue Zhang and
Xiaomeng Zhang and
Chunfang Zheng and
James H. Leebens{-}Mack and
David Sankoff},
title = {Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized
Adjacencies and Chromosomal Gene Co-Occurrences},
journal = {J. Comput. Biol.},
volume = {28},
number = {11},
pages = {1156--1179},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.0340},
doi = {10.1089/CMB.2021.0340},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuJZZZLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZIKS21,
author = {Yue Zhang and
Chunfang Zheng and
Sindeed Islam and
Yong{-}Min Kim and
David Sankoff},
title = {Branching Out to Speciation in a Model of Fractionation: The Malvaceae},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1875--1884},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2955649},
doi = {10.1109/TCBB.2019.2955649},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZIKS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/YuZS20,
author = {Zhe Yu and
Chunfang Zheng and
David Sankoff},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Gaps and Runs in Syntenic Alignments},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {49--60},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_5},
doi = {10.1007/978-3-030-42266-0\_5},
timestamp = {Tue, 21 Jul 2020 12:07:35 +0200},
biburl = {https://dblp.org/rec/conf/alcob/YuZS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/XuJZLS20,
author = {Qiaoji Xu and
Lingling Jin and
Chunfang Zheng and
James H. Leebens{-}Mack and
David Sankoff},
editor = {Sumit Kumar Jha and
Ion I. Mandoiu and
Sanguthevar Rajasekaran and
Pavel Skums and
Alex Zelikovsky},
title = {{RACCROCHE:} Ancestral Flowering Plant Chromosomes and Gene Orders
Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences},
booktitle = {Computational Advances in Bio and Medical Sciences - 10th International
Conference, {ICCABS} 2020, Virtual Event, December 10-12, 2020, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12686},
pages = {97--115},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-79290-9\_9},
doi = {10.1007/978-3-030-79290-9\_9},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/XuJZLS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ZhangZS19,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {A branching process for homology distribution-based inference of polyploidy,
speciation and loss},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {18:1--18:13},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0153-8},
doi = {10.1186/S13015-019-0153-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/ZhangZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZS19,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {Distinguishing successive ancient polyploidy levels based on genome-internal
syntenic alignment},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {20},
pages = {635},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3202-x},
doi = {10.1186/S12859-019-3202-X},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SankoffZZMLT19,
author = {David Sankoff and
Chunfang Zheng and
Yue Zhang and
Joao Meidanis and
Eric Lyons and
Haibao Tang},
title = {Models for Similarity Distributions of Syntenic Homologs and Applications
to Phylogenomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {3},
pages = {727--737},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2849377},
doi = {10.1109/TCBB.2018.2849377},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SankoffZZMLT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ZhengJTS18,
author = {Chunfang Zheng and
Yuji Jeong and
Madisyn Gabrielle Turcotte and
David Sankoff},
title = {Resolution effects in reconstructing ancestral genomes},
journal = {{BMC} Genom.},
volume = {19},
number = {{S2}},
year = {2018},
url = {https://doi.org/10.1186/s12864-018-4462-y},
doi = {10.1186/S12864-018-4462-Y},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ZhengJTS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZS18,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {Evolutionary Model for the Statistical Divergence of Paralogous and
Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {5},
pages = {1579--1584},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2712695},
doi = {10.1109/TCBB.2017.2712695},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangZS18,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
editor = {Mathieu Blanchette and
A{\"{\i}}da Ouangraoua},
title = {Speciation and Rate Variation in a Birth-and-Death Account of {WGD}
and Fractionation; the Case of Solanaceae},
booktitle = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11183},
pages = {146--160},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00834-5\_8},
doi = {10.1007/978-3-030-00834-5\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ZhengS16,
author = {Chunfang Zheng and
David Sankoff},
title = {Locating rearrangement events in a phylogeny based on highly fragmented
assemblies},
journal = {{BMC} Genom.},
volume = {17},
number = {{S-1}},
pages = {1},
year = {2016},
url = {https://doi.org/10.1186/s12864-015-2294-6},
doi = {10.1186/S12864-015-2294-6},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ZhengS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SankoffZLT16,
author = {David Sankoff and
Chunfang Zheng and
Eric Lyons and
Haibao Tang},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {The Trees in the Peaks},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {3--14},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_1},
doi = {10.1007/978-3-319-38827-4\_1},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/SankoffZLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SankoffZWN15,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang and
Carlos Fernando Buen Abad Najar},
title = {Structural vs. functional mechanisms of duplicate gene loss following
whole genome doubling},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S17}},
pages = {S9},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s17-s9},
doi = {10.1186/1471-2105-16-S17-S9},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SankoffZWN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SilvaDZS15,
author = {Poly H. da Silva and
Simone Dantas and
Chunfang Zheng and
David Sankoff},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Graph-Theoretic Modelling of the Domain Chaining Problem},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {296--307},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_22},
doi = {10.1007/978-3-662-48221-6\_22},
timestamp = {Thu, 14 Oct 2021 10:34:16 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SilvaDZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ZhengS14,
author = {Chunfang Zheng and
David Sankoff},
title = {Practical halving; the Nelumbo nucifera evidence on early eudicot
evolution},
journal = {Comput. Biol. Chem.},
volume = {50},
pages = {75--81},
year = {2014},
url = {https://doi.org/10.1016/j.compbiolchem.2014.01.010},
doi = {10.1016/J.COMPBIOLCHEM.2014.01.010},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/ZhengS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/SankoffWZN14,
author = {David Sankoff and
Baoyong Wang and
Chunfang Zheng and
Carlos Fernando Buen Abad Najar},
title = {Structural vs. functional mechanisms of duplicate gene loss following
whole genome doubling},
booktitle = {{IEEE} 4th International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2014, Miami, FL, USA, June 2-4, 2014},
pages = {1--2},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICCABS.2014.6863915},
doi = {10.1109/ICCABS.2014.6863915},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/SankoffWZN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenNZBLTCAS13,
author = {Eric C. H. Chen and
Carlos Fernando Buen Abad Najar and
Chunfang Zheng and
Alex Brandts and
Eric Lyons and
Haibao Tang and
Lorenzo Carretero{-}Paulet and
Victor A. Albert and
David Sankoff},
title = {The dynamics of functional classes of plant genes in rediploidized
ancient polyploids},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S19},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S19},
doi = {10.1186/1471-2105-14-S15-S19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNZBLTCAS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS13,
author = {Chunfang Zheng and
David Sankoff},
title = {Practical aliquoting of flowering plant genomes},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S8},
doi = {10.1186/1471-2105-14-S15-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/SankoffZ13,
author = {David Sankoff and
Chunfang Zheng},
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Fractionation, Rearrangement, Consolidation, Reconstruction},
booktitle = {Models and Algorithms for Genome Evolution},
pages = {247--260},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9\_11},
doi = {10.1007/978-1-4471-5298-9\_11},
timestamp = {Tue, 16 May 2017 14:01:34 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/SankoffZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SankoffZ12,
author = {David Sankoff and
Chunfang Zheng},
title = {Fractionation, rearrangement and subgenome dominance},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {402--408},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts392},
doi = {10.1093/BIOINFORMATICS/BTS392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SankoffZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS12,
author = {Chunfang Zheng and
David Sankoff},
title = {Gene order in rosid phylogeny, inferred from pairwise syntenies among
extant genomes},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-10}},
pages = {S9},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S10-S9},
doi = {10.1186/1471-2105-13-S10-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JahnZKS12,
author = {Katharina Jahn and
Chunfang Zheng and
Jakub Kov{\'{a}}c and
David Sankoff},
title = {A consolidation algorithm for genomes fractionated after higher order
polyploidization},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S8},
doi = {10.1186/1471-2105-13-S19-S8},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JahnZKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/SankoffZW12,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang},
title = {A model for biased fractionation after whole genome duplication},
journal = {{BMC} Genom.},
volume = {13},
number = {{S-1}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2164-13-S1-S8},
doi = {10.1186/1471-2164-13-S1-S8},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/SankoffZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangZSZ12,
author = {Haitao Jiang and
Chunfang Zheng and
David Sankoff and
Binhai Zhu},
title = {Scaffold Filling under the Breakpoint and Related Distances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1220--1229},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.57},
doi = {10.1109/TCBB.2012.57},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangZSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ZhengALS12,
author = {Chunfang Zheng and
Victor A. Albert and
Eric Lyons and
David Sankoff},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Ancient angiosperm hexaploidy meets ancestral eudicot gene order},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182649},
doi = {10.1109/ICCABS.2012.6182649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/ZhengALS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZW12,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang},
editor = {Benny Chor},
title = {A Model for Biased Fractionation after Whole Genome Duplication},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {244},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_26},
doi = {10.1007/978-3-642-29627-7\_26},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS11,
author = {Chunfang Zheng and
David Sankoff},
title = {On the {PATHGROUPS} approach to rapid small phylogeny},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S4},
doi = {10.1186/1471-2105-12-S1-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZS11,
author = {Baoyong Wang and
Chunfang Zheng and
David Sankoff},
title = {Fractionation statistics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S5},
doi = {10.1186/1471-2105-12-S9-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/ZhengS11,
author = {Chunfang Zheng and
David Sankoff},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among
Extant Genomes},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {99--110},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_13},
doi = {10.1007/978-3-642-21260-4\_13},
timestamp = {Fri, 21 Aug 2020 17:12:20 +0200},
biburl = {https://dblp.org/rec/conf/isbra/ZhengS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhengSLS11,
author = {Chunfang Zheng and
Krister M. Swenson and
Eric Lyons and
David Sankoff},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {364--375},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_30},
doi = {10.1007/978-3-642-23038-7\_30},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhengSLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Zheng10,
author = {Chunfang Zheng},
title = {Pathgroups, a dynamic data structure for genome reconstruction problems},
journal = {Bioinform.},
volume = {26},
number = {13},
pages = {1587--1594},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq255},
doi = {10.1093/BIOINFORMATICS/BTQ255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Zheng10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunozZZARS10,
author = {Adriana Mu{\~{n}}oz and
Chunfang Zheng and
Qian Zhu and
Victor A. Albert and
Steve Rounsley and
David Sankoff},
title = {Scaffold filling, contig fusion and comparative gene order inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {304},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-304},
doi = {10.1186/1471-2105-11-304},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MunozZZARS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icee/Zheng10a,
author = {Chunfang Zheng},
title = {Analysis of Applicability of Strategic Trade Policy to China's Electronics
and Information Industry: {A} Perspective from Market Power},
booktitle = {The International Conference on E-Business and E-Government, {ICEE}
2010, 7-9 May 2010, Guangzhou, China, Proceedings},
pages = {3695--3698},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICEE.2010.928},
doi = {10.1109/ICEE.2010.928},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icee/Zheng10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JiangZSZ10,
author = {Haitao Jiang and
Chunfang Zheng and
David Sankoff and
Binhai Zhu},
editor = {Eric Tannier},
title = {Scaffold Filling under the Breakpoint Distance},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {83--92},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_8},
doi = {10.1007/978-3-642-16181-0\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JiangZSZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TannierZS09,
author = {Eric Tannier and
Chunfang Zheng and
David Sankoff},
title = {Multichromosomal median and halving problems under different genomic
distances},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-120},
doi = {10.1186/1471-2105-10-120},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TannierZS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZhengWLPAS09,
author = {Chunfang Zheng and
P. Kerr Wall and
James H. Leebens{-}Mack and
Claude de Pamphilis and
Victor A. Albert and
David Sankoff},
title = {Gene Loss under Neighborhood Selection Following Whole genome Duplication
and the Reconstruction of the Ancestral Populus genome},
journal = {J. Bioinform. Comput. Biol.},
volume = {7},
number = {3},
pages = {499--520},
year = {2009},
url = {https://doi.org/10.1142/S0219720009004199},
doi = {10.1142/S0219720009004199},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ZhengWLPAS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffZWPLA09,
author = {David Sankoff and
Chunfang Zheng and
P. Kerr Wall and
Claude de Pamphilis and
James H. Leebens{-}Mack and
Victor A. Albert},
title = {Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm
Phylogeny},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1353--1367},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0103},
doi = {10.1089/CMB.2009.0103},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffZWPLA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/SankoffZMYAWCZ09,
author = {David Sankoff and
Chunfang Zheng and
Adriana Mu{\~{n}}oz and
Zhenyu Yang and
Zaky Adam and
Robert Warren and
Vicky Choi and
Qian Zhu},
title = {Issues in the Reconstruction of Gene Order Evolution},
journal = {J. Comput. Sci. Technol.},
volume = {25},
number = {1},
pages = {10--25},
year = {2009},
url = {https://doi.org/10.1007/s11390-010-9301-9},
doi = {10.1007/S11390-010-9301-9},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcst/SankoffZMYAWCZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhengZS08,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
title = {Descendants of Whole Genome Duplication within Gene Order Phylogeny},
journal = {J. Comput. Biol.},
volume = {15},
number = {8},
pages = {947--964},
year = {2008},
url = {https://doi.org/10.1089/cmb.2008.0118},
doi = {10.1089/CMB.2008.0118},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhengZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZhengZAS08,
author = {Chunfang Zheng and
Qian Zhu and
Zaky Adam and
David Sankoff},
title = {Guided genome halving: hardness, heuristics and the history of the
Hemiascomycetes},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {96--104},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn146},
doi = {10.1093/BIOINFORMATICS/BTN146},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/ZhengZAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZWdLA08,
author = {David Sankoff and
Chunfang Zheng and
P. Kerr Wall and
Claude W. dePamphilis and
James H. Leebens{-}Mack and
Victor A. Albert},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm
Phylogeny},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {252--264},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_19},
doi = {10.1007/978-3-540-87989-3\_19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZWdLA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TannierZS08,
author = {Eric Tannier and
Chunfang Zheng and
David Sankoff},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Multichromosomal Genome Median and Halving Problems},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {1--13},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_1},
doi = {10.1007/978-3-540-87361-7\_1},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TannierZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuZS07,
author = {Wei Xu and
Chunfang Zheng and
David Sankoff},
title = {Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {423--435},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A004},
doi = {10.1089/CMB.2007.A004},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengZS07,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
title = {Removing Noise and Ambiguities from Comparative Maps in Rearrangement
Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {515--522},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.1075},
doi = {10.1109/TCBB.2007.1075},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SankoffZZ07,
author = {David Sankoff and
Chunfang Zheng and
Qian Zhu},
title = {Polyploids, genome halving and phylogeny},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {433--439},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm169},
doi = {10.1093/BIOINFORMATICS/BTM169},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/SankoffZZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengZS07,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
editor = {Glenn Tesler and
Dannie Durand},
title = {Parts of the Problem of Polyploids in Rearrangement Phylogeny},
booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG}
2007, San Diego, CA, USA, September 16-18, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4751},
pages = {162--176},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74960-8\_13},
doi = {10.1007/978-3-540-74960-8\_13},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhengZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChoiZZS07,
author = {Vicky Choi and
Chunfang Zheng and
Qian Zhu and
David Sankoff},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Algorithms for the Extraction of Synteny Blocks from Comparative Maps},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {277--288},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_26},
doi = {10.1007/978-3-540-74126-8\_26},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ChoiZZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/ZhengS06,
author = {Chunfang Zheng and
David Sankoff},
title = {Genome rearrangements with partially ordered chromosomes},
journal = {J. Comb. Optim.},
volume = {11},
number = {2},
pages = {133--144},
year = {2006},
url = {https://doi.org/10.1007/s10878-006-7120-2},
doi = {10.1007/S10878-006-7120-2},
timestamp = {Thu, 18 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jco/ZhengS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/ZhengS06,
author = {Chunfang Zheng and
David Sankoff},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Rearrangement of Noisy Genomes},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {791--798},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_106},
doi = {10.1007/11758525\_106},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/ZhengS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuZS06,
author = {Andrew Wei Xu and
Chunfang Zheng and
David Sankoff},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {51--62},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_5},
doi = {10.1007/11864127\_5},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuZS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/ZhengS05,
author = {Chunfang Zheng and
David Sankoff},
editor = {Lusheng Wang},
title = {Genome Rearrangements with Partially Ordered Chromosomes},
booktitle = {Computing and Combinatorics, 11th Annual International Conference,
{COCOON} 2005, Kunming, China, August 16-29, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3595},
pages = {52--62},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11533719\_8},
doi = {10.1007/11533719\_8},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/ZhengS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZhengLS05,
author = {Chunfang Zheng and
Aleksander Lenert and
David Sankoff},
title = {Reversal distance for partially ordered genomes},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {502--508},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1037},
doi = {10.1093/BIOINFORMATICS/BTI1037},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ZhengLS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZL05,
author = {David Sankoff and
Chunfang Zheng and
Aleksander Lenert},
editor = {Aoife McLysaght and
Daniel H. Huson},
title = {Reversals of Fortune},
booktitle = {Comparative Genomics, {RECOMB} 2005 International Workshop, {RCG}
2005, Dublin, Ireland, September 18-20, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3678},
pages = {131--141},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11554714\_12},
doi = {10.1007/11554714\_12},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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