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ORCIDBibTeX records: Metin Nafi Gürcan
@article{DBLP:journals/corr/abs-2401-08738,
author = {Mostafa Rezapour and
Muhammad Khalid Khan Niazi and
Hao Lu and
Aarthi Narayanan and
Metin Nafi G{\"{u}}rcan},
title = {Machine Learning-Based Analysis of Ebola Virus' Impact on Gene Expression
in Nonhuman Primates},
journal = {CoRR},
volume = {abs/2401.08738},
year = {2024}
}
@article{DBLP:journals/cbm/SuRSGN23,
author = {Ziyu Su and
Mostafa Rezapour and
Usama Sajjad and
Metin Nafi G{\"{u}}rcan and
Muhammad Khalid Khan Niazi},
title = {Attention2Minority: {A} salient instance inference-based multiple
instance learning for classifying small lesions in whole slide images},
journal = {Comput. Biol. Medicine},
volume = {167},
pages = {107607},
year = {2023}
}
@inproceedings{DBLP:conf/micad/SuKTGSN23,
author = {Ziyu Su and
Sandhya Kumar and
Thomas E. Tavolara and
Metin N. Gurcan and
Scott Segal and
M. Khalid Khan Niazi},
title = {Predicting obstructive sleep apnea severity from craniofacial images
using ensemble machine learning models},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {12465},
publisher = {{SPIE}},
year = {2023}
}
@article{DBLP:journals/corr/abs-2301-07700,
author = {Ziyu Su and
Mostafa Rezapour and
Usama Sajjad and
Metin Nafi G{\"{u}}rcan and
Muhammad Khalid Khan Niazi},
title = {Attention2Minority: {A} salient instance inference-based multiple
instance learning for classifying small lesions in whole slide images},
journal = {CoRR},
volume = {abs/2301.07700},
year = {2023}
}
@article{DBLP:journals/corr/abs-2309-09412,
author = {Ziyu Su and
Mostafa Rezapour and
Usama Sajjad and
Shuo Niu and
Metin Nafi G{\"{u}}rcan and
Muhammad Khalid Khan Niazi},
title = {Cross-attention-based saliency inference for predicting cancer metastasis
on whole slide images},
journal = {CoRR},
volume = {abs/2309.09412},
year = {2023}
}
@article{DBLP:journals/corr/abs-2309-15990,
author = {Mostafa Rezapour and
Rachel B. Seymour and
Stephen H. Sims and
Madhav A. Karunakar and
Nahir Habet and
Metin Nafi G{\"{u}}rcan},
title = {Machine Learning Based Analytics for the Significance of Gait Analysis
in Monitoring and Managing Lower Extremity Injuries},
journal = {CoRR},
volume = {abs/2309.15990},
year = {2023}
}
@article{DBLP:journals/mia/SuTCLGN22,
author = {Ziyu Su and
Thomas E. Tavolara and
Gabriel Carreno{-}Galeano and
Sang Jin Lee and
Metin N. Gurcan and
M. Khalid Khan Niazi},
title = {Attention2majority: Weak multiple instance learning for regenerative
kidney grading on whole slide images},
journal = {Medical Image Anal.},
volume = {79},
pages = {102462},
year = {2022}
}
@article{DBLP:journals/nca/BinolNEMG22,
author = {Hamidullah Binol and
M. Khalid Khan Niazi and
Charles Elmaraghy and
Aaron C. Moberly and
Metin N. Gurcan},
title = {OtoXNet - automated identification of eardrum diseases from otoscope
videos: a deep learning study for video-representing images},
journal = {Neural Comput. Appl.},
volume = {34},
number = {14},
pages = {12197--12210},
year = {2022}
}
@article{DBLP:journals/patterns/LyuNMTBCCDGLLMP22,
author = {Qing Lyu and
Sanjeev V. Namjoshi and
Emory McTyre and
Umit Topaloglu and
Richard Barcus and
Michael D. Chan and
Christina K. Cramer and
Waldemar Debinski and
Metin N. Gurcan and
Glenn J. Lesser and
Hui{-}Kuan Lin and
Reginald F. Munden and
Boris C. Pasche and
Kiran Kumar Solingapuram Sai and
Roy E. Strowd and
Stephen B. Tatter and
Kounosuke Watabe and
Wei Zhang and
Ge Wang and
Christopher T. Whitlow},
title = {A transformer-based deep-learning approach for classifying brain metastases
into primary organ sites using clinical whole-brain {MRI} images},
journal = {Patterns},
volume = {3},
number = {11},
pages = {100613},
year = {2022}
}
@article{DBLP:journals/cbm/TavolaraGSN21,
author = {Thomas E. Tavolara and
Metin N. Gurcan and
Scott Segal and
M. Khalid Khan Niazi},
title = {Identification of difficult to intubate patients from frontal face
images using an ensemble of deep learning models},
journal = {Comput. Biol. Medicine},
volume = {136},
pages = {104737},
year = {2021}
}
@inproceedings{DBLP:conf/micad/TavolaraJGMN21,
author = {Thomas E. Tavolara and
Adam M. Jorgensen and
Metin N. Gurcan and
Sean V. Murphy and
M. Khalid Khan Niazi},
title = {Panoptic segmentation of wounds in a pig model},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {11597},
publisher = {{SPIE}},
year = {2021}
}
@inproceedings{DBLP:conf/midp/CamalanNDSG21,
author = {Seda Camalan and
M. Khalid Khan Niazi and
Mahesh Devarasetty and
Shay Soker and
Metin N. Gurcan},
title = {Bladder cancer organoid image analysis: textured-based grading},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021}
}
@inproceedings{DBLP:conf/midp/TavolaraCGLN21,
author = {Thomas E. Tavolara and
Gabriel Carreno{-}Galeano and
Metin N. Gurcan and
Sang Jin Lee and
M. Khalid Khan Niazi},
title = {Grading and localization of histological features for bioengineered
kidney constructs},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021}
}
@inproceedings{DBLP:conf/midp/TavolaraNBG21,
author = {Thomas E. Tavolara and
M. Khalid Khan Niazi and
Gillian Beamer and
Metin N. Gurcan},
title = {Identifying lung imaging biomarkers of {BCG} vaccination after infection
with Mycobacterium tuberculosis},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021}
}
@article{DBLP:journals/corr/abs-2110-03588,
author = {Qing Lyu and
Sanjeev V. Namjoshi and
Emory McTyre and
Umit Topaloglu and
Richard Barcus and
Michael D. Chan and
Christina K. Cramer and
Waldemar Debinski and
Metin N. Gurcan and
Glenn J. Lesser and
Hui{-}Kuan Lin and
Reginald F. Munden and
Boris C. Pasche and
Kiran Kumar Solingapuram Sai and
Roy E. Strowd and
Stephen B. Tatter and
Kounosuke Watabe and
Wei Zhang and
Ge Wang and
Christopher T. Whitlow},
title = {A transformer-based deep learning approach for classifying brain metastases
into primary organ sites using clinical whole brain {MRI} images},
journal = {CoRR},
volume = {abs/2110.03588},
year = {2021}
}
@article{DBLP:journals/jms/FauziCKHFG20,
author = {Mohammad Faizal Ahmad Fauzi and
Wei Chen and
Debbie Knight and
Heather Hampel and
Wendy L. Frankel and
Metin N. Gurcan},
title = {Tumor Budding Detection System in Whole Slide Pathology Images},
journal = {J. Medical Syst.},
volume = {44},
number = {2},
pages = {38},
year = {2020}
}
@inproceedings{DBLP:conf/micad/BinolMNESETTYG20,
author = {Hamidullah Binol and
Aaron C. Moberly and
M. Khalid Khan Niazi and
Garth Essig and
Jay Shah and
Charles Elmaraghy and
Theodoros Teknos and
Nazhat Taj{-}Schaal and
Lianbo Yu and
Metin N. Gurcan},
title = {Decision fusion on image analysis and tympanometry to detect eardrum
abnormalities},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {11314},
publisher = {{SPIE}},
year = {2020}
}
@inproceedings{DBLP:conf/micad/BinolNPSKG20,
author = {Hamidullah Binol and
M. Khalid Khan Niazi and
Alisha Plotner and
Jennifer Sopkovich and
Benjamin Kaffenberger and
Metin N. Gurcan},
title = {A multidimensional scaling and sample clustering to obtain a representative
subset of training data for transfer learning-based rosacea lesion
identification},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {11314},
publisher = {{SPIE}},
year = {2020}
}
@inproceedings{DBLP:conf/midp/TavolaraNBG20,
author = {Thomas E. Tavolara and
Muhammad Khalid Khan Niazi and
Gillian Beamer and
Metin N. Gurcan},
title = {Segmentation of mycobacterium tuberculosis bacilli clusters from acid-fast
stained lung biopsies: a deep learning approach},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11320},
pages = {113200E},
publisher = {{SPIE}},
year = {2020}
}
@inproceedings{DBLP:conf/midp/NiaziYLPG20,
author = {Muhammad Khalid Khan Niazi and
Enes Yazgan and
Cheryl Lee and
Anil Parwani and
Metin N. Gurcan},
title = {Identifying bladder layers from {H} and {E} images using U-Net image
segmentation},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11320},
pages = {1132006},
publisher = {{SPIE}},
year = {2020}
}
@inproceedings{DBLP:conf/midp/NiaziMBHPG20,
author = {Muhammad Khalid Khan Niazi and
Katherine Moore and
Kenneth S. Berenhaut and
Douglas J. Hartman and
Liron Pantanowitz and
Metin N. Gurcan},
title = {Hotspot detection in pancreatic neuroendocrine images using local
depth},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {11320},
pages = {1132008},
publisher = {{SPIE}},
year = {2020}
}
@inproceedings{DBLP:conf/tencon/BanaeeyanFCKHFG20,
author = {Rasoul Banaeeyan and
Mohammad Faizal Ahmad Fauzi and
Wei Chen and
Debbie Knight and
Heather Hampel and
Wendy L. Frankel and
Metin N. Gurcan},
title = {Tumor Budding Detection in H{\&}E-Stained Images Using Deep Semantic
Learning},
booktitle = {{TENCON}},
pages = {52--56},
publisher = {{IEEE}},
year = {2020}
}
@article{DBLP:journals/artmed/NiaziL0AMTGB19,
author = {M. Khalid Khan Niazi and
Yuzhang Lin and
Feng Liu and
Amit Ashok and
Michael W. Marcellin and
Gary Tozbikian and
Metin Nafi G{\"{u}}rcan and
Ali Bilgin},
title = {Pathological image compression for big data image analysis: Application
to hotspot detection in breast cancer},
journal = {Artif. Intell. Medicine},
volume = {95},
pages = {82--87},
year = {2019}
}
@inproceedings{DBLP:conf/amia/KohnTGWD19,
author = {Martin S. Kohn and
Umit Topaloglu and
Metin N. Gurcan and
Brian Wells and
Ajay Dharod},
title = {Developing Biomedical Informatics Capability to Support Learning Health
System: Challenges and Potential Solutions},
booktitle = {{AMIA}},
publisher = {{AMIA}},
year = {2019}
}
@inproceedings{DBLP:conf/midp/NiaziTSTHAPG19,
author = {Muhammad Khalid Khan Niazi and
Thomas E. Tavolara and
{\c{C}}aglar Senaras and
Gary Tozbikian and
Douglas J. Hartman and
Vidya Arole and
Liron Pantanowitz and
Metin N. Gurcan},
title = {Generalization of tumor identification algorithms},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10956},
pages = {109560Z},
publisher = {{SPIE}},
year = {2019}
}
@inproceedings{DBLP:conf/midp/SenarasNACSSLHL19,
author = {{\c{C}}aglar Senaras and
M. Khalid Khan Niazi and
Vidya Arole and
Weijie Chen and
Berkman Sahiner and
Arwa Shana'ah and
Abner Louissaint and
Robert Paul Hasserjian and
Gerard Lozanski and
Metin Nafi G{\"{u}}rcan},
title = {Segmentation of follicles from CD8-stained slides of follicular lymphoma
using deep learning},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10956},
pages = {109560R},
publisher = {{SPIE}},
year = {2019}
}
@inproceedings{DBLP:conf/midp/Gurcan19,
author = {Metin N. Gurcan},
title = {Pixels to diagnosis: image analysis for digital pathology (Conference
Presentation)},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10956},
pages = {1095603},
publisher = {{SPIE}},
year = {2019}
}
@inproceedings{DBLP:conf/midp/TavolaraNCFG19,
author = {Thomas E. Tavolara and
Muhammad Khalid Khan Niazi and
Wei Chen and
Wendy L. Frankel and
Metin N. Gurcan},
title = {Colorectal tumor identification by transferring knowledge from pan-cytokeratin
to H{\&}E},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10956},
pages = {1095614},
publisher = {{SPIE}},
year = {2019}
}
@article{DBLP:journals/corr/abs-1909-07581,
author = {Saima Rathore and
Muhammad Aksam Iftikhar and
Metin N. Gurcan and
Zissimos Mourelatos},
title = {Radiopathomics: Integration of radiographic and histologic characteristics
for prognostication in glioblastoma},
journal = {CoRR},
volume = {abs/1909.07581},
year = {2019}
}
@article{DBLP:journals/cmbbeiv/KatapadiCTG18,
author = {Aashish B. Katapadi and
M. Emre Celebi and
Shannon C. Trotter and
Metin N. Gurcan},
title = {Evolving strategies for the development and evaluation of a computerised
melanoma image analysis system},
journal = {Comput. methods Biomech. Biomed. Eng. Imaging Vis.},
volume = {6},
number = {4},
pages = {465--472},
year = {2018}
}
@inproceedings{DBLP:conf/micad/SenarasMTEETYG18,
author = {{\c{C}}aglar Senaras and
Aaron C. Moberly and
Theodoros Teknos and
Garth Essig and
Charles Elmaraghy and
Nazhat Taj{-}Schaal and
Lianbo Yu and
Metin N. Gurcan},
title = {Detection of eardrum abnormalities using ensemble deep learning approaches},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {10575},
pages = {105751A},
publisher = {{SPIE}},
year = {2018}
}
@inproceedings{DBLP:conf/midp/NiaziTAPLG18,
author = {M. Khalid Khan Niazi and
Thomas E. Tavolara and
Vidya Arole and
Anil V. Parwani and
Cheryl Lee and
Metin N. Gurcan},
title = {Automated {T1} bladder risk stratification based on depth of lamina
propria invasion from {H} and {E} tissue biopsies: a deep learning
approach},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {105810H},
publisher = {{SPIE}},
year = {2018}
}
@inproceedings{DBLP:conf/midp/SenarasSTLG18,
author = {{\c{C}}aglar Senaras and
Berkman Sahiner and
Gary Tozbikian and
Gerard Lozanski and
Metin N. Gurcan},
title = {Creating synthetic digital slides using conditional generative adversarial
networks: application to Ki67 staining},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {1058103},
publisher = {{SPIE}},
year = {2018}
}
@inproceedings{DBLP:conf/midp/SenarasPCSSLHLG18,
author = {{\c{C}}aglar Senaras and
Michael Pennell and
Weijie Chen and
Berkman Sahiner and
Arwa Shana'ah and
Abner Louissaint and
Robert Paul Hasserjian and
Gerard Lozanski and
Metin Nafi G{\"{u}}rcan},
title = {Tumor microenvironment for follicular lymphoma: structural analysis
for outcome prediction},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {1058106},
publisher = {{SPIE}},
year = {2018}
}
@inproceedings{DBLP:conf/midp/NiaziBG18,
author = {M. Khalid Khan Niazi and
Gillian Beamer and
Metin N. Gurcan},
title = {An application of transfer learning to neutrophil cluster detection
for tuberculosis: efficient implementation with nonmetric multidimensional
scaling and sampling},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {1058108},
publisher = {{SPIE}},
year = {2018}
}
@proceedings{DBLP:conf/midp/2018,
editor = {John E. Tomaszewski and
Metin N. Gurcan},
title = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States,
10-15 February 2018},
series = {{SPIE} Proceedings},
volume = {10581},
publisher = {{SPIE}},
year = {2018}
}
@article{DBLP:journals/jbi/GurcanTODRS17,
author = {Metin N. Gurcan and
John Tomaszewski and
James A. Overton and
Scott Doyle and
Alan Ruttenberg and
Barry Smith},
title = {Developing the Quantitative Histopathology Image Ontology {(QHIO):}
{A} case study using the hot spot detection problem},
journal = {J. Biomed. Informatics},
volume = {66},
pages = {129--135},
year = {2017}
}
@article{DBLP:journals/titb/NiaziYZCCKLG17,
author = {M. Khalid Khan Niazi and
Keluo Yao and
Debra L. Zynger and
Steven K. Clinton and
James Chen and
Mehmet Koyut{\"{u}}rk and
Thomas LaFramboise and
Metin N. Gurcan},
title = {Visually Meaningful Histopathological Features for Automatic Grading
of Prostate Cancer},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {21},
number = {4},
pages = {1027--1038},
year = {2017}
}
@inproceedings{DBLP:conf/micad/SenarasMTEETYG17,
author = {{\c{C}}aglar Senaras and
Aaron C. Moberly and
Theodoros Teknos and
Garth Essig and
Charles Elmaraghy and
Nazhat Taj{-}Schaal and
Lianbo Yu and
Metin N. Gurcan},
title = {Autoscope: automated otoscopy image analysis to diagnose ear pathology
and use of clinically motivated eardrum features},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {10134},
pages = {101341X},
publisher = {{SPIE}},
year = {2017}
}
@inproceedings{DBLP:conf/midp/NiaziBG17,
author = {M. Khalid Khan Niazi and
Gillian Beamer and
Metin N. Gurcan},
title = {A computational framework to detect normal and tuberculosis infected
lung from {H} and E-stained whole slide images},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10140},
pages = {101400J},
publisher = {{SPIE}},
year = {2017}
}
@inproceedings{DBLP:conf/midp/SenarasPCSSLHLG17,
author = {{\c{C}}aglar Senaras and
Michael Pennell and
Weijie Chen and
Berkman Sahiner and
Arwa Shana'ah and
Abner Louissaint and
Robert Paul Hasserjian and
Gerard Lozanski and
Metin Nafi G{\"{u}}rcan},
title = {FOXP3-stained image analysis for follicular lymphoma: optimal adaptive
thresholding with maximal nucleus coverage},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {10140},
pages = {101400E},
publisher = {{SPIE}},
year = {2017}
}
@proceedings{DBLP:conf/midp/2017,
editor = {Metin N. Gurcan and
John E. Tomaszewski},
title = {Medical Imaging 2017: Digital Pathology, Orlando, Florida, United
States, 11-16 February 2017},
series = {{SPIE} Proceedings},
volume = {10140},
publisher = {{SPIE}},
year = {2017}
}
@article{DBLP:journals/cbm/GoceriSLJG16,
author = {Evgin G{\"{o}}{\c{c}}eri and
Zarine K. Shah and
Rick R. Layman and
Xia Jiang and
Metin N. Gurcan},
title = {Quantification of liver fat: {A} comprehensive review},
journal = {Comput. Biol. Medicine},
volume = {71},
pages = {174--189},
year = {2016}
}
@inproceedings{DBLP:conf/micad/AbasKBG16,
author = {Fazly Salleh Abas and
Benjamin Kaffenberger and
Joseph Bikowski and
Metin N. Gurcan},
title = {Acne image analysis: lesion localization and classification},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {9785},
pages = {97850B},
publisher = {{SPIE}},
year = {2016}
}
@inproceedings{DBLP:conf/midp/NiaziHPG16,
author = {M. Khalid Khan Niazi and
Douglas J. Hartman and
Liron Pantanowitz and
Metin N. Gurcan},
title = {Hotspot detection in pancreatic neuroendocrine tumors: density approximation
by {\(\alpha\)}-shape maps},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {97910B},
publisher = {{SPIE}},
year = {2016}
}
@inproceedings{DBLP:conf/midp/NiaziPG16,
author = {M. Khalid Khan Niazi and
Anil V. Parwani and
Metin N. Gurcan},
title = {Computer-assisted bladder cancer grading: {\(\alpha\)}-shapes for
color space decomposition},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {979107},
publisher = {{SPIE}},
year = {2016}
}
@inproceedings{DBLP:conf/midp/AbasGGOG16,
author = {Fazly Salleh Abas and
Hamza Numan Gokozan and
Behiye Goksel and
Jose Javier Otero and
Metin N. Gurcan},
title = {Intraoperative neuropathology of glioma recurrence: cell detection
and classification},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {979109},
publisher = {{SPIE}},
year = {2016}
}
@proceedings{DBLP:conf/midp/2016,
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Medical Imaging 2016: Digital Pathology, San Diego, California, United
States, 27 February - 3 March 2016},
series = {{SPIE} Proceedings},
volume = {9791},
publisher = {{SPIE}},
year = {2016}
}
@article{DBLP:journals/cbm/FauziKCGSG15,
author = {Mohammad Faizal Ahmad Fauzi and
Ibrahim Khansa and
Karen Catignani and
Gayle Gordillo and
Chandan K. Sen and
Metin N. Gurcan},
title = {Computerized segmentation and measurement of chronic wound images},
journal = {Comput. Biol. Medicine},
volume = {60},
pages = {74--85},
year = {2015}
}
@article{DBLP:journals/cmig/BelhommeTPOGB15,
author = {Philippe Belhomme and
Simon Toralba and
Beno{\^{\i}}t Plancoulaine and
Myriam Oger and
Metin N. Gurcan and
Catherine Bor{-}Angelier},
title = {Heterogeneity assessment of histological tissue sections in whole
slide images},
journal = {Comput. Medical Imaging Graph.},
volume = {42},
pages = {51--55},
year = {2015}
}
@article{DBLP:journals/midm/FauziPSCSHGKLJK15,
author = {Mohammad Faizal Ahmad Fauzi and
Michael Pennell and
Berkman Sahiner and
Weijie Chen and
Arwa Shana'ah and
Jessica Hemminger and
Alejandro Gru and
Habibe Kurt and
Michael Losos and
Amy Joehlin{-}Price and
Christina Kavran and
Stephen M. Smith and
Nicholas Nowacki and
Sharmeen Mansor and
Gerard Lozanski and
Metin N. Gurcan},
title = {Classification of follicular lymphoma: the effect of computer aid
on pathologists grading},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {15},
pages = {115},
year = {2015}
}
@inproceedings{DBLP:conf/his2/FauziGPOG15,
author = {Mohammad Faizal Ahmad Fauzi and
Hamza N. Gokozan and
Christopher R. Pierson and
Jose Javier Otero and
Metin Nafi G{\"{u}}rcan},
title = {Prognostic Reporting of p53 Expression by Image Analysis in Glioblastoma
Patients: Detection and Classification},
booktitle = {{HIS}},
series = {Lecture Notes in Computer Science},
volume = {9085},
pages = {165--173},
publisher = {Springer},
year = {2015}
}
@inproceedings{DBLP:conf/midp/AkakinGOG15,
author = {Hatice {\c{C}}inar Akakin and
Hamza N. Gokozan and
Jose Javier Otero and
Metin N. Gurcan},
title = {An adaptive algorithm for detection of multiple-type, positively stained
nuclei in {IHC} images with minimal prior information: application
to {OLIG2} staining gliomas},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9420},
pages = {942007},
publisher = {{SPIE}},
year = {2015}
}
@inproceedings{DBLP:conf/midp/NiaziWPG15,
author = {M. Khalid Khan Niazi and
Daniel A. Weiser and
Bruce R. Pawel and
Metin N. Gurcan},
title = {Characterizing primary refractory neuroblastoma: prediction of outcome
by microscopic image analysis},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9420},
pages = {942008},
publisher = {{SPIE}},
year = {2015}
}
@proceedings{DBLP:conf/midp/2015,
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United
States, 21-26 February 2015},
series = {{SPIE} Proceedings},
volume = {9420},
publisher = {{SPIE}},
year = {2015}
}
@article{DBLP:journals/cbm/GoceriGD14,
author = {Evgin G{\"{o}}{\c{c}}eri and
Metin Nafi G{\"{u}}rcan and
Oguz Dicle},
title = {Fully automated liver segmentation from {SPIR} image series},
journal = {Comput. Biol. Medicine},
volume = {53},
pages = {265--278},
year = {2014}
}
@article{DBLP:journals/concurrency/BokhariCG14,
author = {Shahid H. Bokhari and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Metin Nafi G{\"{u}}rcan},
title = {Massively multithreaded maxflow for image segmentation on the Cray
{XMT-2}},
journal = {Concurr. Comput. Pract. Exp.},
volume = {26},
number = {18},
pages = {2836--2855},
year = {2014}
}
@inproceedings{DBLP:conf/micad/FauziKCGSG14,
author = {Mohammad Faizal Ahmad Fauzi and
Ibrahim Khansa and
Karen Catignani and
Gayle Gordillo and
Chandan K. Sen and
Metin N. Gurcan},
title = {Segmentation and automated measurement of chronic wound images: probability
map approach},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {9035},
pages = {903507},
publisher = {{SPIE}},
year = {2014}
}
@inproceedings{DBLP:conf/midp/FauziGEPOG14,
author = {Mohammad Faizal Ahmad Fauzi and
Hamza Numan Gokozan and
Brad Elder and
Vinay K. Puduvalli and
Jose Javier Otero and
Metin N. Gurcan},
title = {Classification of glioblastoma and metastasis for neuropathology intraoperative
diagnosis: a multi-resolution textural approach to model the background},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9041},
pages = {90410F},
publisher = {{SPIE}},
year = {2014}
}
@inproceedings{DBLP:conf/midp/NiaziHKLG14,
author = {M. Khalid Khan Niazi and
Jessica Hemminger and
Habibe Kurt and
Gerard Lozanski and
Metin N. Gurcan},
title = {Grading vascularity from histopathological images based on traveling
salesman distance and vessel size},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9041},
pages = {90410C},
publisher = {{SPIE}},
year = {2014}
}
@inproceedings{DBLP:conf/midp/NiaziDG14,
author = {M. Khalid Khan Niazi and
Erinn Downs{-}Kelly and
Metin N. Gurcan},
title = {Hot spot detection for breast cancer in Ki-67 stained slides: image
dependent filtering approach},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9041},
pages = {904106},
publisher = {{SPIE}},
year = {2014}
}
@proceedings{DBLP:conf/midp/2014,
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Medical Imaging 2014: Digital Pathology, San Diego, California, United
States, 15-20 February 2014},
series = {{SPIE} Proceedings},
volume = {9041},
publisher = {{SPIE}},
year = {2014}
}
@article{DBLP:journals/jdi/MumcuogluLCG13,
author = {{\"{U}}. Erkan Mumcuoglu and
Frederick R. Long and
Robert G. Castile and
Metin N. Gurcan},
title = {Image Analysis for Cystic Fibrosis: Computer-Assisted Airway Wall
and Vessel Measurements from Low-Dose, Limited Scan Lung {CT} Images},
journal = {J. Digit. Imaging},
volume = {26},
number = {1},
pages = {82--96},
year = {2013}
}
@inproceedings{DBLP:conf/midp/NiaziPEHJKKMPRZ13,
author = {M. Khalid Khan Niazi and
Michael Pennell and
Camille Elkins and
Jessica Hemminger and
Ming Jin and
Sean Kirby and
Habibe Kurt and
Barrie Miller and
Elizabeth Plocharczyk and
Rachel Roth and
Rebecca Ziegler and
Arwa Shana'ah and
Fred Racke and
Gerard Lozanski and
Metin N. Gurcan},
title = {Entropy based quantification of Ki-67 positive cell images and its
evaluation by a reader study},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {8676},
pages = {86760I},
publisher = {{SPIE}},
year = {2013}
}
@inproceedings{DBLP:conf/midp/AcarLG13,
author = {Evrim Acar and
Gerard Lozanski and
Metin N. Gurcan},
title = {Tensor-based computation and modeling in multi-resolution digital
pathology imaging: application to follicular lymphoma grading},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {8676},
pages = {867603},
publisher = {{SPIE}},
year = {2013}
}
@inproceedings{DBLP:conf/midp/NiaziSG13,
author = {M. Khalid Khan Niazi and
Anjali A. Satoskar and
Metin N. Gurcan},
title = {An automated method for counting cytotoxic T-cells from {CD8} stained
images of renal biopsies},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {8676},
pages = {867606},
publisher = {{SPIE}},
year = {2013}
}
@proceedings{DBLP:conf/midp/2013,
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Medical Imaging 2013: Digital Pathology, Lake Buena Vista (Orlando
Area), Florida, United States, 9-14 February 2013},
series = {{SPIE} Proceedings},
volume = {8676},
publisher = {{SPIE}},
year = {2013}
}
@article{DBLP:journals/cmig/OgerBG12,
author = {Myriam Oger and
Philippe Belhomme and
Metin N. Gurcan},
title = {A general framework for the segmentation of follicular lymphoma virtual
slides},
journal = {Comput. Medical Imaging Graph.},
volume = {36},
number = {6},
pages = {442--451},
year = {2012}
}
@article{DBLP:journals/jamia/PayneJBBLJG12,
author = {Philip R. O. Payne and
Rebecca D. Jackson and
Thomas M. Best and
Tara Borlawsky and
Albert M. Lai and
Stephen L. James and
Metin N. Gurcan},
title = {Applying knowledge-anchored hypothesis discovery methods to advance
clinical and translational research: the OAMiner project},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {6},
pages = {1110--1114},
year = {2012}
}
@article{DBLP:journals/jocs/SamsiKG12,
author = {Siddharth Samsi and
Ashok K. Krishnamurthy and
Metin N. Gurcan},
title = {An efficient computational framework for the analysis of whole slide
images: Application to follicular lymphoma immunohistochemistry},
journal = {J. Comput. Sci.},
volume = {3},
number = {5},
pages = {269--279},
year = {2012}
}
@article{DBLP:journals/titb/AkakinG12,
author = {Hatice {\c{C}}inar Akakin and
Metin N. Gurcan},
title = {Content-Based Microscopic Image Retrieval System for Multi-Image Queries},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {16},
number = {4},
pages = {758--769},
year = {2012}
}
@inproceedings{DBLP:conf/micad/AkakinKEHMMPRWZ12,
author = {Hatice {\c{C}}inar Akakin and
Hui Kong and
Camille Elkins and
Jessica Hemminger and
Barrie Miller and
Jin Ming and
Elizabeth Plocharczyk and
Rachel Roth and
Mitchell Weinberg and
Rebecca Ziegler and
Gerard Lozanski and
Metin N. Gurcan},
title = {Automated detection of cells from immunohistochemically-stained tissues:
application to Ki-67 nuclei staining},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {8315},
pages = {831503},
publisher = {{SPIE}},
year = {2012}
}
@inproceedings{DBLP:conf/micad/OztanKGY12,
author = {Basak Oztan and
Hui Kong and
Metin Nafi G{\"{u}}rcan and
B{\"{u}}lent Yener},
title = {Follicular lymphoma grading using cell-graphs and multi-scale feature
analysis},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {8315},
pages = {831516},
publisher = {{SPIE}},
year = {2012}
}
@inproceedings{DBLP:conf/siu/CinarAG12,
author = {Yagmur Gizem Cinar and
Hatice {\c{C}}inar Akakin and
Metin Nafi G{\"{u}}rcan},
title = {Content-based image retrieval of centroblast cells and noncentroblast
cells in Follicular lymphoma},
booktitle = {{SIU}},
pages = {1--4},
publisher = {{IEEE}},
year = {2012}
}
@article{DBLP:journals/cmig/LezorayGCO11,
author = {Olivier Lezoray and
Metin N. Gurcan and
Ali Can and
Jean{-}Christophe Olivo{-}Marin},
title = {Special issue on whole slide microscopic image processing},
journal = {Comput. Medical Imaging Graph.},
volume = {35},
number = {7-8},
pages = {493--495},
year = {2011}
}
@article{DBLP:journals/cmig/Belkacem-BoussaidSLG11,
author = {Kamel Belkacem{-}Boussaid and
Siddharth Samsi and
Gerard Lozanski and
Metin N. Gurcan},
title = {Automatic detection of follicular regions in H{\&}E images using
iterative shape index},
journal = {Comput. Medical Imaging Graph.},
volume = {35},
number = {7-8},
pages = {592--602},
year = {2011}
}
@article{DBLP:journals/cmig/SertelDCG11,
author = {Olcay Sertel and
Belma Dogdas and
Chi Sung Chiu and
Metin N. Gurcan},
title = {Microscopic image analysis for quantitative characterization of muscle
fiber type composition},
journal = {Comput. Medical Imaging Graph.},
volume = {35},
number = {7-8},
pages = {616--628},
year = {2011}
}
@article{DBLP:journals/jdi/PrescottBSHJG11,
author = {Jeffrey W. Prescott and
Thomas M. Best and
Mark S. Swanson and
Furqan Haq and
Rebecca D. Jackson and
Metin N. Gurcan},
title = {Anatomically Anchored Template-Based Level Set Segmentation: Application
to Quadriceps Muscles in {MR} Images from the Osteoarthritis Initiative},
journal = {J. Digit. Imaging},
volume = {24},
number = {1},
pages = {28--43},
year = {2011}
}
@article{DBLP:journals/mia/AbabnehPG11,
author = {Sufyan Y. Ababneh and
Jeffrey W. Prescott and
Metin N. Gurcan},
title = {Automatic graph-cut based segmentation of bones from knee magnetic
resonance images for osteoarthritis research},
journal = {Medical Image Anal.},
volume = {15},
number = {4},
pages = {438--448},
year = {2011}
}
@article{DBLP:journals/tbe/DundarBBRJSG11,
author = {Murat Dundar and
Sunil Badve and
G{\"{o}}khan Bilgin and
Vikas C. Raykar and
Rohit K. Jain and
Olcay Sertel and
Metin N. Gurcan},
title = {Computerized Classification of Intraductal Breast Lesions Using Histopathological
Images},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {58},
number = {7},
pages = {1977--1984},
year = {2011}
}
@article{DBLP:journals/tmi/KongGB11,
author = {Hui Kong and
Metin N. Gurcan and
Kamel Belkacem{-}Boussaid},
title = {Partitioning Histopathological Images: An Integrated Framework for
Supervised Color-Texture Segmentation and Cell Splitting},
journal = {{IEEE} Trans. Medical Imaging},
volume = {30},
number = {9},
pages = {1661--1677},
year = {2011}
}
@inproceedings{DBLP:conf/isbi/KongGB11,
author = {Hui Kong and
Metin N. Gurcan and
Kamel Belkacem{-}Boussaid},
title = {Splitting touching-cell clusters on histopathological images},
booktitle = {{ISBI}},
pages = {208--211},
publisher = {{IEEE}},
year = {2011}
}
@inproceedings{DBLP:conf/miip/KongBG11,
author = {Hui Kong and
Kamel Belkacem{-}Boussaid and
Metin N. Gurcan},
title = {Cell nuclei segmentation for histopathological image analysis},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {7962},
pages = {79622R},
publisher = {{SPIE}},
year = {2011}
}
@article{DBLP:journals/jdi/PrescottZWMYSG10,
author = {Jeffrey W. Prescott and
Dongqing Zhang and
Jian Z. Wang and
Nina A. Mayr and
William T. C. Yuh and
Joel H. Saltz and
Metin N. Gurcan},
title = {Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer
Treatment Outcome Prediction: Preliminary Evaluation},
journal = {J. Digit. Imaging},
volume = {23},
number = {3},
pages = {342--357},
year = {2010}
}
@article{DBLP:journals/tbe/SamsiLSKG10,
author = {Siddharth Samsi and
Gerard Lozanski and
Arwa Shanaah and
Ashok K. Krishnamurthy and
Metin N. Gurcan},
title = {Detection of Follicles From IHC-Stained Slides of Follicular Lymphoma
Using Iterative Watershed},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {57},
number = {10},
pages = {2609--2612},
year = {2010}
}
@article{DBLP:journals/tbe/SertelLSG10,
author = {Olcay Sertel and
Gerard Lozanski and
Arwa Shana'ah and
Metin N. Gurcan},
title = {Computer-Aided Detection of Centroblasts for Follicular Lymphoma Grading
Using Adaptive Likelihood-Based Cell Segmentation},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {57},
number = {10},
pages = {2613--2616},
year = {2010}
}
@inproceedings{DBLP:conf/icip/SuhreKCG10,
author = {Alexander Suhre and
Kivan{\c{c}} K{\"{o}}se and
A. Enis {\c{C}}etin and
Metin N. Gurcan},
title = {Content-adaptive color transform for image compression},
booktitle = {{ICIP}},
pages = {189--192},
publisher = {{IEEE}},
year = {2010}
}
@inproceedings{DBLP:conf/icpr/GurcanMR10,
author = {Metin N. Gurcan and
Anant Madabhushi and
Nasir M. Rajpoot},
title = {Pattern Recognition in Histopathological Images: An {ICPR} 2010 Contest},
booktitle = {{ICPR} Contests},
series = {Lecture Notes in Computer Science},
volume = {6388},
pages = {226--234},
publisher = {Springer},
year = {2010}
}
@inproceedings{DBLP:conf/icpr/SertelCLSG10,
author = {Olcay Sertel and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Gerard Lozanski and
Arwa Shanaah and
Metin N. Gurcan},
title = {An Image Analysis Approach for Detecting Malignant Cells in Digitized
H{\&}E-stained Histology Images of Follicular Lymphoma},
booktitle = {{ICPR}},
pages = {273--276},
publisher = {{IEEE} Computer Society},
year = {2010}
}
@inproceedings{DBLP:conf/icpr/DundarBRJSG10,
author = {Murat Dundar and
Sunil Badve and
Vikas C. Raykar and
Rohit K. Jain and
Olcay Sertel and
Metin N. Gurcan},
title = {A Multiple Instance Learning Approach toward Optimal Classification
of Pathology Slides},
booktitle = {{ICPR}},
pages = {2732--2735},
publisher = {{IEEE} Computer Society},
year = {2010}
}
@inproceedings{DBLP:conf/isbi/Belkacem-BoussaidPLSG10,
author = {Kamel Belkacem{-}Boussaid and
Michael Pennell and
Gerard Lozanski and
Arwa Shana'ah and
Metin N. Gurcan},
title = {Effect of pathologist agreement on evaluating a computer-aided assisted
system: recognizing centroblast cells in follicular lymphoma cases},
booktitle = {{ISBI}},
pages = {1411--1414},
publisher = {{IEEE}},
year = {2010}
}
@inproceedings{DBLP:conf/isbi/SertelDCG10,
author = {Olcay Sertel and
Belma Dogdas and
Chi Sung Chiu and
Metin N. Gurcan},
title = {Muscle histology image analysis for sarcopenia: registration of successive
sections with distinct ATPase activity},
booktitle = {{ISBI}},
pages = {1423--1426},
publisher = {{IEEE}},
year = {2010}
}
@inproceedings{DBLP:conf/micad/Belkacem-Boussaid10,
author = {Kamel Belkacem{-}Boussaid and
Jeffrey W. Prescott and
Gerard Lozanski and
Metin N. Gurcan},
title = {Segmentation of follicular regions on H{\&}E slides using a matching
filter and active contour model},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {7624},
pages = {762436},
publisher = {{SPIE}},
year = {2010}
}
@inproceedings{DBLP:conf/miip/PrescottBHJG10,
author = {Jeffrey W. Prescott and
Thomas M. Best and
Furqan Haq and
Rebecca D. Jackson and
Metin Nafi G{\"{u}}rcan},
title = {An analysis of methods for the selection of atlases for use in medical
image segmentation},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {7623},
pages = {76231T},
publisher = {{SPIE}},
year = {2010}
}
@article{DBLP:journals/cmpb/CooperSKLHG09,
author = {Lee A. D. Cooper and
Olcay Sertel and
Jun Kong and
Gerard Lozanski and
Kun Huang and
Metin N. Gurcan},
title = {Feature-based registration of histopathology images with different
stains: An application for computerized follicular lymphoma prognosis},
journal = {Comput. Methods Programs Biomed.},
volume = {96},
number = {3},
pages = {182--192},
year = {2009}
}
@article{DBLP:journals/ijdmb/RuizSUCSG09,
author = {Antonio Ruiz and
Olcay Sertel and
Manuel Ujaldon and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Stroma classification for neuroblastoma on graphics processors},
journal = {Int. J. Data Min. Bioinform.},
volume = {3},
number = {3},
pages = {280--298},
year = {2009}
}
@article{DBLP:journals/jdi/SharmaPCGKS09,
author = {Ashish Sharma and
Tony Pan and
Berkant Barla Cambazoglu and
Metin N. Gurcan and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {VirtualPACS - {A} Federating Gateway to Access Remote Image Data Resources
over the Grid},
journal = {J. Digit. Imaging},
volume = {22},
number = {1},
pages = {1--10},
year = {2009}
}
@article{DBLP:journals/jdi/ErdalCPSKG09,
author = {Selnur Erdal and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Philip R. O. Payne and
Joel H. Saltz and
Jyoti Kamal and
Metin N. Gurcan},
title = {A Knowledge-Anchored Integrative Image Search and Retrieval System},
journal = {J. Digit. Imaging},
volume = {22},
number = {2},
pages = {166--182},
year = {2009}
}
@article{DBLP:journals/pr/KongSSBSG09,
author = {Jun Kong and
Olcay Sertel and
Hiroyuki Shimada and
Kim L. Boyer and
Joel H. Saltz and
Metin N. Gurcan},
title = {Computer-aided evaluation of neuroblastoma on whole-slide histology
images: Classifying grade of neuroblastic differentiation},
journal = {Pattern Recognit.},
volume = {42},
number = {6},
pages = {1080--1092},
year = {2009}
}
@article{DBLP:journals/pr/SertelKSCSG09,
author = {Olcay Sertel and
Jun Kong and
Hiroyuki Shimada and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Computer-aided prognosis of neuroblastoma on whole-slide images: Classification
of stromal development},
journal = {Pattern Recognit.},
volume = {42},
number = {6},
pages = {1093--1103},
year = {2009}
}
@article{DBLP:journals/vlsisp/SertelKCLSG09,
author = {Olcay Sertel and
Jun Kong and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Gerard Lozanski and
Joel H. Saltz and
Metin N. Gurcan},
title = {Histopathological Image Analysis Using Model-Based Intermediate Representations
and Color Texture: Follicular Lymphoma Grading},
journal = {J. Signal Process. Syst.},
volume = {55},
number = {1-3},
pages = {169--183},
year = {2009}
}
@inproceedings{DBLP:conf/cluster/TeodoroOSGMCF09,
author = {George Teodoro and
Rafael Sachetto Oliveira and
Olcay Sertel and
Metin N. Gurcan and
Wagner Meira Jr. and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Renato Ferreira},
title = {Coordinating the use of {GPU} and {CPU} for improving performance
of compute intensive applications},
booktitle = {{CLUSTER}},
pages = {1--10},
publisher = {{IEEE} Computer Society},
year = {2009}
}
@inproceedings{DBLP:conf/iscis/PrescottSPGHBJ09,
author = {Jeffrey W. Prescott and
Mark S. Swanson and
Kimerly A. Powell and
Metin N. Gurcan and
Furqan Haq and
Thomas M. Best and
Rebecca D. Jackson},
title = {Template-based level set segmentation using anatomical information},
booktitle = {{ISCIS}},
pages = {24--29},
publisher = {{IEEE}},
year = {2009}
}
@article{DBLP:journals/computer/KumarNKKGS08,
author = {Vijay S. Kumar and
Sivaramakrishnan Narayanan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Metin N. Gurcan and
Joel H. Saltz},
title = {Analysis and Semantic Querying in Large Biomedical Image Datasets},
journal = {Computer},
volume = {41},
number = {4},
pages = {52--59},
year = {2008}
}
@article{DBLP:journals/computer/SaltzKHLOESPGPFPCCLOMFMBSS08,
author = {Joel H. Saltz and
Tahsin M. Kur{\c{c}} and
Shannon Hastings and
Stephen Langella and
Scott Oster and
David Ervin and
Ashish Sharma and
Tony Pan and
Metin N. Gurcan and
Justin Permar and
Renato Ferreira and
Philip R. O. Payne and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Enrico Caserta and
Gustavo Leone and
Michael C. Ostrowski and
Ravi K. Madduri and
Ian T. Foster and
Subhasree Madhavan and
Kenneth H. Buetow and
Krishnakant Shanbhag and
Eliot L. Siegel},
title = {e-Science, caGrid, and Translational Biomedical Research},
journal = {Computer},
volume = {41},
number = {11},
pages = {58--66},
year = {2008}
}
@inproceedings{DBLP:conf/hpc/CatalyurekHSURSG08,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Timothy D. R. Hartley and
Olcay Sertel and
Manuel Ujaldon and
Antonio Ruiz and
Joel H. Saltz and
Metin N. Gurcan},
title = {Processing of Large-Scale Biomedical Images on a Cluster of Multicore
CPUs and GPUs},
booktitle = {High Performance Computing Workshop},
series = {Advances in Parallel Computing},
volume = {18},
pages = {341--364},
publisher = {{IOS} Press},
year = {2008}
}
@inproceedings{DBLP:conf/icassp/SertelKLSCSG08,
author = {Olcay Sertel and
Jun Kong and
Gerard Lozanski and
Arwa Shanaah and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Texture classification using nonlinear color quantization: Application
to histopathological image analysis},
booktitle = {{ICASSP}},
pages = {597--600},
publisher = {{IEEE}},
year = {2008}
}
@inproceedings{DBLP:conf/isbi/RuizKUBSG08,
author = {Antonio Ruiz and
Jun Kong and
Manuel Ujaldon and
Kim L. Boyer and
Joel H. Saltz and
Metin N. Gurcan},
title = {Pathological image segmentation for neuroblastoma using the {GPU}},
booktitle = {{ISBI}},
pages = {296--299},
publisher = {{IEEE}},
year = {2008}
}
@inproceedings{DBLP:conf/micad/SertelKSCSG08,
author = {Olcay Sertel and
Jun Kong and
Hiroyuki Shimada and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Computer-aided prognosis of neuroblastoma: classification of stromal
development on whole-slide images},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {6915},
pages = {69150P},
publisher = {{SPIE}},
year = {2008}
}
@inproceedings{DBLP:conf/micad/KongSSBSG08,
author = {Jun Kong and
Olcay Sertel and
Hiroyuki Shimada and
Kim L. Boyer and
Joel H. Saltz and
Metin N. Gurcan},
title = {A multi-resolution image analysis system for computer-assisted grading
of neuroblastoma differentiation},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {6915},
pages = {69151T},
publisher = {{SPIE}},
year = {2008}
}
@inproceedings{DBLP:conf/micad/PrescottZWMYSG08,
author = {Jeffrey W. Prescott and
Dongqing Zhang and
Jian Z. Wang and
Nina A. Mayr and
William T. C. Yuh and
Joel H. Saltz and
Metin N. Gurcan},
title = {Cancer treatment outcome prediction by assessing temporal change:
application to cervical cancer},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {6915},
pages = {69152X},
publisher = {{SPIE}},
year = {2008}
}
@inproceedings{DBLP:conf/micad/SertelKLCSG08,
author = {Olcay Sertel and
Jun Kong and
Gerard Lozanski and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Computerized microscopic image analysis of follicular lymphoma},
booktitle = {Medical Imaging: Computer-Aided Diagnosis},
series = {{SPIE} Proceedings},
volume = {6915},
pages = {691535},
publisher = {{SPIE}},
year = {2008}
}
@inproceedings{DBLP:conf/miccai/QureshiSRWG08,
author = {Hammad Qureshi and
Olcay Sertel and
Nasir M. Rajpoot and
Roland Wilson and
Metin N. Gurcan},
title = {Adaptive Discriminant Wavelet Packet Transform and Local Binary Patterns
for Meningioma Subtype Classification},
booktitle = {{MICCAI} {(2)}},
series = {Lecture Notes in Computer Science},
volume = {5242},
pages = {196--204},
publisher = {Springer},
year = {2008}
}
@article{DBLP:journals/jdi/GurcanPSKOLHSSS07,
author = {Metin N. Gurcan and
Tony Pan and
Ashish Sharma and
Tahsin M. Kur{\c{c}} and
Scott Oster and
Stephen Langella and
Shannon Hastings and
Khan M. Siddiqui and
Eliot L. Siegel and
Joel H. Saltz},
title = {GridIMAGE: {A} Novel Use of Grid Computing to Support Interactive
Human and Computer-Assisted Detection Decision Support},
journal = {J. Digit. Imaging},
volume = {20},
number = {2},
pages = {160--171},
year = {2007}
}
@inproceedings{DBLP:conf/amia/GurcanKSCSC07,
author = {Metin N. Gurcan and
Jun Kong and
Olcay Sertel and
Berkant Barla Cambazoglu and
Joel H. Saltz and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Computerized Pathological Image Analysis For Neuroblastoma Prognosis},
booktitle = {{AMIA}},
publisher = {{AMIA}},
year = {2007}
}
@inproceedings{DBLP:conf/bibm/RuizSUCSG07,
author = {Antonio Ruiz and
Olcay Sertel and
Manuel Ujaldon and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Metin N. Gurcan},
title = {Pathological Image Analysis Using the {GPU:} Stroma Classification
for Neuroblastoma},
booktitle = {{BIBM}},
pages = {78--88},
publisher = {{IEEE} Computer Society},
year = {2007}
}
@inproceedings{DBLP:conf/clade/CambazogluSKSGC07,
author = {Berkant Barla Cambazoglu and
Olcay Sertel and
Jun Kong and
Joel H. Saltz and
Metin N. Gurcan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Efficient processing of pathological images using the grid: computer-aided
prognosis of neuroblastoma},
booktitle = {CLADE@HPDC},
pages = {35--41},
publisher = {{ACM}},
year = {2007}
}
@inproceedings{DBLP:conf/cluster/KumarKKCGS07,
author = {Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Jun Kong and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Metin N. Gurcan and
Joel H. Saltz},
title = {Performance vs. accuracy trade-offs for large-scale image analysis
applications},
booktitle = {{CLUSTER}},
pages = {100--109},
publisher = {{IEEE} Computer Society},
year = {2007}
}
@inproceedings{DBLP:conf/icip/KongSSBSG07,
author = {Jun Kong and
Olcay Sertel and
Hiroyuki Shimada and
Kim L. Boyer and
Joel H. Saltz and
Metin N. Gurcan},
title = {Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution
and Multi-Classifier Approach},
booktitle = {{ICIP} {(5)}},
pages = {525--528},
publisher = {{IEEE}},
year = {2007}
}
@inproceedings{DBLP:conf/isbi/KongSBSG07,
author = {Jun Kong and
Hiroyuki Shimada and
Kim L. Boyer and
Joel H. Saltz and
Metin N. Gurcan},
title = {Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation},
booktitle = {{ISBI}},
pages = {61--64},
publisher = {{IEEE}},
year = {2007}
}
@inproceedings{DBLP:conf/embc/GurcanPSS06,
author = {Metin N. Gurcan and
Tony Pan and
Hiroyuki Shimada and
Joel H. Saltz},
title = {Image Analysis for Neuroblastoma Classification: Segmentation of Cell
Nuclei},
booktitle = {{EMBC}},
pages = {4844--4847},
publisher = {{IEEE}},
year = {2006}
}
@inproceedings{DBLP:conf/hpc/CatalyurekNSKCPSHLOKGS06,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Sivaramakrishnan Narayanan and
Olcay Sertel and
Jun Kong and
Berkant Barla Cambazoglu and
Tony Pan and
Ashish Sharma and
Shannon Hastings and
Stephen Langella and
Scott Oster and
Tahsin M. Kur{\c{c}} and
Metin Nafi G{\"{u}}rcan and
Joel H. Saltz},
title = {Service-Based Access to and Processing of Large Scientific Datasets},
booktitle = {High Performance Computing Workshop},
series = {Advances in Parallel Computing},
volume = {16},
pages = {345--362},
publisher = {{IOS} Press},
year = {2006}
}
@inproceedings{DBLP:conf/miip/GurcanEOWHR06,
author = {Metin N. Gurcan and
Randy Ernst and
Aytekin Oto and
Steve Worrell and
Jeffrey W. Hoffmeister and
Steve Rogers},
title = {Measurement of colonic polyp size from virtual colonoscopy studies:
comparison of manual and automated methods},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {6144},
pages = {61445B},
publisher = {{SPIE}},
year = {2006}
}
@inproceedings{DBLP:conf/cars/GurcanHRDABH03,
author = {Metin N. Gurcan and
Russell C. Hardie and
Steven K. Rogers and
D. E. Dozer and
Brent H. Allen and
R. V. Burns and
Jeffrey W. Hoffmeister},
title = {Automated global matching of temporal thoracic helical {CT} studies:
feasibility study},
booktitle = {{CARS}},
series = {International Congress Series},
volume = {1256},
pages = {1031--1036},
publisher = {Elsevier},
year = {2003}
}
@inproceedings{DBLP:conf/miip/GurcanCSHPH02,
author = {Metin Nafi G{\"{u}}rcan and
Heang{-}Ping Chan and
Berkman Sahiner and
Lubomir M. Hadjiiski and
Nicholas Petrick and
Mark A. Helvie},
title = {Optimal neural network architecture selection: effects on computer-aided
detection of mammographic microcalcifications},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {4684},
publisher = {{SPIE}},
year = {2002}
}
@inproceedings{DBLP:conf/miip/HadjiiskiCSPHRG02,
author = {Lubomir M. Hadjiiski and
Heang{-}Ping Chan and
Berkman Sahiner and
Nicholas Petrick and
Mark A. Helvie and
Marilyn A. Roubidoux and
Metin Nafi G{\"{u}}rcan},
title = {Computer-aided characterization of malignant and benign microcalcification
clusters based on the analysis of temporal change of mammographic
features},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {4684},
publisher = {{SPIE}},
year = {2002}
}
@inproceedings{DBLP:conf/miip/SahinerGCHPH02,
author = {Berkman Sahiner and
Metin Nafi G{\"{u}}rcan and
Heang{-}Ping Chan and
Lubomir M. Hadjiiski and
Nicholas Petrick and
Mark A. Helvie},
title = {Use of joint two-view information for computerized lesion detection
on mammograms: improvement of microcalcification detection accuracy},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {4684},
publisher = {{SPIE}},
year = {2002}
}
@article{DBLP:journals/tmi/SahinerPCHPHG01,
author = {Berkman Sahiner and
Nicholas Petrick and
Heang{-}Ping Chan and
Lubomir M. Hadjiiski and
Chintana Paramagul and
Mark A. Helvie and
Metin N. Gurcan},
title = {Computer-Aided Characterization of Mammographic Masses: Accuracy of
Mass Segmentation and Its Effect on Characterization},
journal = {{IEEE} Trans. Medical Imaging},
volume = {20},
number = {12},
pages = {1275--1284},
year = {2001}
}
@inproceedings{DBLP:conf/miip/GurcanPSCCKH01,
author = {Metin Nafi G{\"{u}}rcan and
Nicholas Petrick and
Berkman Sahiner and
Heang{-}Ping Chan and
Philip N. Cascade and
Ella A. Kazerooni and
Lubomir M. Hadjiiski},
title = {Computerized lung nodule detection on thoracic {CT} images: combined
rule-based and statistical classifier for false-positive reduction},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {4322},
publisher = {{SPIE}},
year = {2001}
}
@inproceedings{DBLP:conf/miip/HadjiiskiSCPHG01,
author = {Lubomir M. Hadjiiski and
Berkman Sahiner and
Heang{-}Ping Chan and
Nicholas Petrick and
Mark A. Helvie and
Metin Nafi G{\"{u}}rcan},
title = {Analysis of temporal change of mammographic features for computer-aided
characterization of malignant and benign masses},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {4322},
publisher = {{SPIE}},
year = {2001}
}
@inproceedings{DBLP:conf/icip/GurcanYC99,
author = {M. Nafi G{\"{u}}rcan and
Yasemin Yardimci and
A. Enis {\c{C}}etin},
title = {Influence Function Based Gaussianity Tests for Detection of Microcalcifications
in Mammogram Images},
booktitle = {{ICIP} {(3)}},
pages = {407--411},
publisher = {{IEEE}},
year = {1999}
}
@inproceedings{DBLP:conf/nsip/GurcanYC99,
author = {Metin N. Gurcan and
Yasemin Yardimci and
A. Enis {\c{C}}etin},
title = {Microcalcification segmentation and mammogram image enhancement using
nonlinear filtering},
booktitle = {{NSIP}},
pages = {588--592},
publisher = {Bogazi{\c{c}}i University Printhouse},
year = {1999}
}
@proceedings{DBLP:conf/nsip/1999,
editor = {A. Enis {\c{C}}etin and
Lale Akarun and
Aysin Ert{\"{u}}z{\"{u}}n and
Metin N. Gurcan and
Yasemin Yardimci},
title = {Proceedings of the {IEEE-EURASIP} Workshop on Nonlinear Signal and
Image Processing (NSIP'99), Antalya, Turkey, June 20-23, 1999},
publisher = {Bogazi{\c{c}}i University Printhouse},
year = {1999}
}
@article{DBLP:journals/sigpro/GurcanGC98,
author = {M. Nafi G{\"{u}}rcan and
{\"{O}}mer Nezih Gerek and
A. Enis {\c{C}}etin},
title = {Nonlinear subband decomposition structures in {GF-(N)} arithmetic},
journal = {Signal Process.},
volume = {64},
number = {2},
pages = {209--213},
year = {1998}
}
@inproceedings{DBLP:conf/mammo/GurcanYC98,
author = {M. Nafi G{\"{u}}rcan and
Yasemin Yardimci and
A. Enis {\c{C}}etin},
title = {Microcalcifications Detection Using Adaptive Filtering and Gaussianity
Tests},
booktitle = {Digital Mammography / {IWDM}},
series = {Computational Imaging and Vision},
volume = {13},
pages = {157--164},
publisher = {Springer},
year = {1998}
}
@article{DBLP:journals/spl/GurcanYCA97,
author = {M. Nafi G{\"{u}}rcan and
Yasemin Yardimci and
A. Enis {\c{C}}etin and
Rashid Ansari},
title = {Detection of microcalcifications in mammograms using higher order
statistics},
journal = {{IEEE} Signal Process. Lett.},
volume = {4},
number = {8},
pages = {213--216},
year = {1997}
}
@inproceedings{DBLP:conf/icassp/GurcanYCA97,
author = {Metin Nafi G{\"{u}}rcan and
Yasemin Yardimci and
A. Enis {\c{C}}etin and
Rashid Ansari},
title = {Automated detection and enhancement of microcalcifications in mammograms
using nonlinear subband decomposition},
booktitle = {{ICASSP}},
pages = {3069--3072},
publisher = {{IEEE} Computer Society},
year = {1997}
}
@inproceedings{DBLP:conf/icip/GurcanGC96,
author = {Metin Nafi G{\"{u}}rcan and
{\"{O}}mer Nezih Gerek and
A. Enis {\c{C}}etin},
title = {A morphological subband decomposition structure using {GF(N)} arithmetic},
booktitle = {{ICIP} {(1)}},
pages = {253--256},
publisher = {{IEEE} Computer Society},
year = {1996}
}
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