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2010 – today
- 2019
[j37]Andreas Mang, Amir Gholami, Christos Davatzikos, George Biros:
CLAIRE: A Distributed-Memory Solver for Constrained Large Deformation Diffeomorphic Image Registration. SIAM J. Scientific Computing 41(5): C548-C584 (2019)- [c43]Amir Gholaminejad, Kurt Keutzer, George Biros:
ANODE: Unconditionally Accurate Memory-Efficient Gradients for Neural ODEs. IJCAI 2019: 730-736 - [c42]Chenhan D. Yu, Severin Reiz, George Biros:
Distributed O(N) Linear Solver for Dense Symmetric Hierarchical Semi-Separable Matrices. MCSoC 2019: 1-8 - [i19]Amir Gholami, Kurt Keutzer, George Biros:
ANODE: Unconditionally Accurate Memory-Efficient Gradients for Neural ODEs. CoRR abs/1902.10298 (2019) - [i18]Tianjun Zhang, Zhewei Yao, Amir Gholami, Kurt Keutzer, Joseph Gonzalez, George Biros, Michael W. Mahoney:
ANODEV2: A Coupled Neural ODE Evolution Framework. CoRR abs/1906.04596 (2019) - [i17]Chao Chen, Severin Reiz, Chenhan D. Yu, Hans-Joachim Bungartz, George Biros:
Fast Evaluation and Approximation of the Gauss-Newton Hessian Matrix for the Multilayer Perceptron. CoRR abs/1910.12184 (2019) - 2018
- [j36]Gökberk Kabacaoglu
, Bryan D. Quaife, George Biros:
Low-resolution simulations of vesicle suspensions in 2D. J. Comput. Physics 357: 43-77 (2018) - [c41]Amir Gholami, Shashank Subramanian, Varun Shenoy, Naveen Himthani, Xiangyu Yue, Sicheng Zhao, Peter H. Jin, George Biros, Kurt Keutzer:
A Novel Domain Adaptation Framework for Medical Image Segmentation. BrainLes@MICCAI (2) 2018: 289-298 - [c40]Chenhan D. Yu, Severin Reiz, George Biros:
Distributed-memory hierarchical compression of dense SPD matrices. SC 2018: 15:1-15:15 - [i16]Andreas Mang, Amir Gholami, Christos Davatzikos, George Biros:
PDE-constrained optimization in medical image analysis. CoRR abs/1803.00058 (2018) - [i15]Andreas Mang, Amir Gholami, Christos Davatzikos, George Biros:
CLAIRE: A distributed-memory solver for constrained large deformation diffeomorphic image registration. CoRR abs/1808.04487 (2018) - [i14]Amir Gholami, Shashank Subramanian, Varun Shenoy, Naveen Himthani, Xiangyu Yue, Sicheng Zhao, Peter H. Jin, George Biros, Kurt Keutzer:
A Novel Domain Adaptation Framework for Medical Image Segmentation. CoRR abs/1810.05732 (2018) - [i13]Spyridon Bakas, Mauricio Reyes, András Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipková, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Ujjwal Baid, Dongjin Kwon, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Alex Varghese, Tran Anh Tuan, Tal Arbel, Aaron Avery, Pranjal B., Subhashis Banerjee, Thomas Batchelder, Kayhan N. Batmanghelich, Enzo Battistella, Martin Bendszus, Eze Benson, José Bernal, George Biros, Mariano Cabezas, Siddhartha Chandra, Yi-Ju Chang, et al.:
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. CoRR abs/1811.02629 (2018) - 2017
- [j35]Andreas Mang, George Biros:
A Semi-Lagrangian Two-Level Preconditioned Newton-Krylov Solver for Constrained Diffeomorphic Image Registration. SIAM J. Scientific Computing 39(6) (2017) - [c39]Chenhan D. Yu, William B. March, George Biros:
An N log N Parallel Fast Direct Solver for Kernel Matrices. IPDPS 2017: 886-896 - [c38]Amir Gholami, Andreas Mang, Klaudius Scheufele, Christos Davatzikos, Miriam Mehl, George Biros:
A framework for scalable biophysics-based image analysis. SC 2017: 19:1-19:13 - [c37]Chenhan D. Yu, James Levitt, Severin Reiz, George Biros:
Geometry-oblivious FMM for compressing dense SPD matrices. SC 2017: 53:1-53:14 - [i12]Chenhan D. Yu, William B. March, George Biros:
An N log N Parallel Fast Direct Solver for Kernel Matrices. CoRR abs/1701.02324 (2017) - [i11]Chenhan D. Yu, James Levitt, Severin Reiz, George Biros:
Geometry-Oblivious FMM for Compressing Dense SPD Matrices. CoRR abs/1707.00164 (2017) - 2016
- [j34]Bryan D. Quaife, George Biros:
Adaptive time stepping for vesicle suspensions. J. Comput. Physics 306: 478-499 (2016) - [j33]Andreas Mang, George Biros:
Constrained H1-Regularization Schemes for Diffeomorphic Image Registration. SIAM J. Imaging Sciences 9(3): 1154-1194 (2016) - [j32]Amir Gholami, Dhairya Malhotra, Hari Sundar, George Biros:
FFT, FMM, or Multigrid? A comparative Study of State-Of-the-Art Poisson Solvers for Uniform and Nonuniform Grids in the Unit Cube. SIAM J. Scientific Computing 38(3) (2016) - [j31]William B. March, Bo Xiao, Chenhan D. Yu, George Biros:
ASKIT: An Efficient, Parallel Library for High-Dimensional Kernel Summations. SIAM J. Scientific Computing 38(5) (2016) - [j30]Bo Xiao, George Biros:
Parallel Algorithms for Nearest Neighbor Search Problems in High Dimensions. SIAM J. Scientific Computing 38(5) (2016) - [j29]Dhairya Malhotra, George Biros:
Algorithm 967: A Distributed-Memory Fast Multipole Method for Volume Potentials. ACM Trans. Math. Softw. 43(2): 17:1-17:27 (2016) - [c36]Jiajun Wang, Ahmed Khawaja, George Biros, Andreas Gerstlauer, Lizy K. John:
Optimizing GPGPU Kernel Summation for Performance and Energy Efficiency. ICPP Workshops 2016: 123-132 - [c35]Chenhan D. Yu, William B. March, Bo Xiao, George Biros:
INV-ASKIT: A Parallel Fast Direct Solver for Kernel Matrices. IPDPS 2016: 161-171 - [c34]Arash Bakhtiari, Dhairya Malhotra, Amir Raoofy, Miriam Mehl, Hans-Joachim Bungartz, George Biros:
A parallel arbitrary-order accurate AMR algorithm for the scalar advection-diffusion equation. SC 2016: 514-525 - [c33]Andreas Mang, Amir Gholami, George Biros:
Distributed-memory large deformation diffeomorphic 3D image registration. SC 2016: 842-853 - [i10]Chenhan D. Yu, William B. March, Bo Xiao, George Biros:
Inv-ASKIT: A Parallel Fast Diret Solver for Kernel Matrices. CoRR abs/1602.01376 (2016) - [i9]Andreas Mang, George Biros:
A Semi-Lagrangian two-level preconditioned Newton-Krylov solver for constrained diffeomorphic image registration. CoRR abs/1604.02153 (2016) - [i8]Andreas Mang, Amir Gholami, George Biros:
Distributed-memory large deformation diffeomorphic 3D image registration. CoRR abs/1608.03630 (2016) - [i7]Ulrich Rüde, Karen Willcox, Lois Curfman McInnes, Hans De Sterck, George Biros, Hans-Joachim Bungartz, James Corones, Evin Cramer, James Crowley, Omar Ghattas, Max D. Gunzburger, Michael Hanke, Robert J. Harrison, Michael A. Heroux, Jan Hesthaven, Peter K. Jimack, Chris Johnson, Kirk E. Jordan, David E. Keyes, Rolf H. Krause, Vipin Kumar, Stefan Mayer, Juan Meza, Knut Martin Mørken, J. Tinsley Oden, Linda R. Petzold, Padma Raghavan, Suzanne M. Shontz, Anne E. Trefethen, Peter R. Turner, Vladimir V. Voevodin, Barbara I. Wohlmuth, Carol S. Woodward:
Research and Education in Computational Science and Engineering. CoRR abs/1610.02608 (2016) - 2015
- [j28]Abtin Rahimian, Shravan K. Veerapaneni, Denis Zorin, George Biros:
Boundary integral method for the flow of vesicles with viscosity contrast in three dimensions. J. Comput. Physics 298: 766-786 (2015) - [j27]Bryan D. Quaife, George Biros:
On preconditioners for the Laplace double-layer in 2D. Numerical Lin. Alg. with Applic. 22(1): 101-122 (2015) - [j26]Hari Sundar, Georg Stadler, George Biros:
Comparison of multigrid algorithms for high-order continuous finite element discretizations. Numerical Lin. Alg. with Applic. 22(4): 664-680 (2015) - [j25]Andreas Mang, George Biros:
An Inexact Newton-Krylov Algorithm for Constrained Diffeomorphic Image Registration. SIAM J. Imaging Sciences 8(2): 1030-1069 (2015) - [j24]William B. March, Bo Xiao, George Biros:
ASKIT: Approximate Skeletonization Kernel-Independent Treecode in High Dimensions. SIAM J. Scientific Computing 37(2) (2015) - [c32]William B. March, Bo Xiao, Chenhan D. Yu, George Biros:
An Algebraic Parallel Treecode in Arbitrary Dimensions. IPDPS 2015: 571-580 - [c31]William B. March, Bo Xiao, Sameer Tharakan, Chenhan D. Yu, George Biros:
Robust Treecode Approximation for Kernel Machines. KDD 2015: 775-784 - [c30]Chenhan D. Yu, Jianyu Huang, Woody Austin, Bo Xiao, George Biros:
Performance optimization for the k-nearest neighbors kernel on x86 architectures. SC 2015: 7:1-7:12 - [c29]William B. March, Bo Xiao, Sameer Tharakan, Chenhan D. Yu, George Biros:
A kernel-independent FMM in general dimensions. SC 2015: 24:1-24:12 - [i6]Andreas Mang, George Biros:
Controlling the deformation map in diffeomorphic image registration. CoRR abs/1503.00757 (2015) - [i5]Amir Gholami, Judith Hill, Dhairya Malhotra, George Biros:
AccFFT: A library for distributed-memory FFT on CPU and GPU architectures. CoRR abs/1506.07933 (2015) - 2014
- [j23]Bryan D. Quaife, George Biros:
High-volume fraction simulations of two-dimensional vesicle suspensions. J. Comput. Physics 274: 245-267 (2014) - [c28]Ahmed Khawaja, Jiajun Wang, Andreas Gerstlauer, Lizy K. John, Dhairya Malhotra, George Biros:
Performance analysis of HPC applications with irregular tree data structures. ICPADS 2014: 418-425 - [c27]Dhairya Malhotra, Amir Gholami, George Biros:
A Volume Integral Equation Stokes Solver for Problems with Variable Coefficients. SC 2014: 92-102 - [i4]Andreas Mang, George Biros:
An inexact Newton-Krylov algorithm for constrained diffeomorphic image registration. CoRR abs/1408.6299 (2014) - [i3]Amir Gholami, Dhairya Malhotra, Hari Sundar, George Biros:
FFT, FMM, or MULTIGRID? A comparative study of state-of-the-art poisson solvers. CoRR abs/1408.6497 (2014) - [i2]William B. March, George Biros:
Far-Field Compression for Fast Kernel Summation Methods in High Dimensions. CoRR abs/1409.2802 (2014) - [i1]William B. March, Bo Xiao, George Biros:
ASKIT: Approximate Skeletonization Kernel-Independent Treecode in High Dimensions. CoRR abs/1410.0260 (2014) - 2013
- [j22]Wei Zhu, Sung Ha Kang, George Biros:
A geodesic-active-contour-based variational model for short-axis cardiac MR image segmentation. Int. J. Comput. Math. 90(1): 124-139 (2013) - [c26]Hari Sundar, Dhairya Malhotra, George Biros:
HykSort: a new variant of hypercube quicksort on distributed memory architectures. ICS 2013: 293-302 - 2012
- [j21]Ilya Lashuk, Aparna Chandramowlishwaran, Harper Langston, Tuan-Anh Nguyen, Rahul S. Sampath, Aashay Shringarpure, Richard W. Vuduc, Lexing Ying, Denis Zorin, George Biros:
A massively parallel adaptive fast multipole method on heterogeneous architectures. Commun. ACM 55(5): 101-109 (2012) - [j20]Stéphanie Chaillat, George Biros:
FaIMS: A fast algorithm for the inverse medium problem with multiple frequencies and multiple sources for the scalar Helmholtz equation. J. Comput. Physics 231(12): 4403-4421 (2012) - [j19]Ali Gooya, Kilian M. Pohl, Michel Bilello, Luigi Cirillo, George Biros, Elias R. Melhem, Christos Davatzikos:
GLISTR: Glioma Image Segmentation and Registration. IEEE Trans. Med. Imaging 31(10): 1941-1954 (2012) - [c25]Hari Sundar, George Biros, Carsten Burstedde, Johann Rudi, Omar Ghattas, Georg Stadler:
Parallel geometric-algebraic multigrid on unstructured forests of octrees. SC 2012: 43 - [c24]Douglas L. Allaire, George Biros, J. Chambers, Omar Ghattas, D. Kordonowy, Karen Willcox:
Dynamic Data Driven Methods for Self-aware Aerospace Vehicles. ICCS 2012: 1206-1210 - 2011
- [j18]Shravan K. Veerapaneni, Abtin Rahimian, George Biros, Denis Zorin:
A fast algorithm for simulating vesicle flows in three dimensions. J. Comput. Physics 230(14): 5610-5634 (2011) - [j17]Ali Gooya, George Biros, Christos Davatzikos:
Deformable Registration of Glioma Images Using EM Algorithm and Diffusion Reaction Modeling. IEEE Trans. Med. Imaging 30(2): 375-390 (2011) - [c23]E. Gerardo Mendizabal-Ruiz, George Biros, Ioannis A. Kakadiaris:
Towards Extra-Luminal Blood Detection from Intravascular Ultrasound Radio Frequency Data. MICCAI (1) 2011: 396-403 - [c22]Ali Gooya, Kilian M. Pohl, Michel Bilello, George Biros, Christos Davatzikos:
Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model. MICCAI (2) 2011: 532-540 - [c21]Logan Moon, Daniel Long, Shreyas Joshi, Vyomkesh Tripathi, Bo Xiao, George Biros:
Poster: parallel algorithms for clustering and nearest neighbor search problems in high dimensions. SC Companion 2011: 57-58 - 2010
- [j16]Abtin Rahimian, Shravan K. Veerapaneni, George Biros:
Dynamic simulation of locally inextensible vesicles suspended in an arbitrary two-dimensional domain, a boundary integral method. J. Comput. Physics 229(18): 6466-6484 (2010) - [j15]Santi S. Adavani, George Biros:
Fast Algorithms for Source Identification Problems with Elliptic PDE Constraints. SIAM J. Imaging Sciences 3(4): 791-808 (2010) - [j14]Rahul S. Sampath, George Biros:
A Parallel Geometric Multigrid Method for Finite Elements on Octree Meshes. SIAM J. Scientific Computing 32(3): 1361-1392 (2010) - [c20]Ali Gooya, George Biros, Christos Davatzikos:
An EM algorithm for brain tumor image registration: A tumor growth modeling based approach. CVPR Workshops 2010: 39-46 - [c19]Aparna Chandramowlishwaran, Samuel Williams, Leonid Oliker, Ilya Lashuk, George Biros, Richard W. Vuduc:
Optimizing and tuning the fast multipole method for state-of-the-art multicore architectures. IPDPS 2010: 1-12 - [c18]Abtin Rahimian, Ilya Lashuk, Shravan K. Veerapaneni, Aparna Chandramowlishwaran, Dhairya Malhotra, Logan Moon, Rahul S. Sampath, Aashay Shringarpure, Jeffrey S. Vetter, Richard W. Vuduc, Denis Zorin, George Biros:
Petascale Direct Numerical Simulation of Blood Flow on 200K Cores and Heterogeneous Architectures. SC 2010: 1-11
2000 – 2009
- 2009
- [j13]Shravan K. Veerapaneni, Denis Gueyffier, Denis Zorin, George Biros:
A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D. J. Comput. Physics 228(7): 2334-2353 (2009) - [j12]Shravan K. Veerapaneni, Denis Gueyffier, George Biros, Denis Zorin:
A numerical method for simulating the dynamics of 3D axisymmetric vesicles suspended in viscous flows. J. Comput. Physics 228(19): 7233-7249 (2009) - [j11]Evangelia I. Zacharaki, Cosmina Hogea, Dinggang Shen, George Biros, Christos Davatzikos:
Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth. NeuroImage 46(3): 762-774 (2009) - [j10]Evangelia I. Zacharaki, Cosmina Hogea, Dinggang Shen, George Biros, Christos Davatzikos:
Corrigendum to "Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth" [NeuroImage 46 (2009) 762-774]. NeuroImage 47(2): 779 (2009) - [c17]Hari Sundar, Christos Davatzikos, George Biros:
Biomechanically-Constrained 4D Estimation of Myocardial Motion. MICCAI (1) 2009: 257-265 - [c16]E. Gerardo Mendizabal-Ruiz, George Biros, Ioannis A. Kakadiaris:
An Inverse Scattering Algorithm for the Segmentation of the Luminal Border on Intravascular Ultrasound Data. MICCAI (1) 2009: 885-892 - [c15]Ilya Lashuk, Aparna Chandramowlishwaran, Harper Langston, Tuan-Anh Nguyen, Rahul S. Sampath, Aashay Shringarpure, Richard W. Vuduc, Lexing Ying, Denis Zorin, George Biros:
A massively parallel adaptive fast-multipole method on heterogeneous architectures. SC 2009 - 2008
- [j9]Shravan K. Veerapaneni, George Biros:
The Chebyshev fast Gauss and nonuniform fast Fourier transforms and their application to the evaluation of distributed heat potentials. J. Comput. Physics 227(16): 7768-7790 (2008) - [j8]Hari Sundar, Rahul S. Sampath, George Biros:
Bottom-Up Construction and 2: 1 Balance Refinement of Linear Octrees in Parallel. SIAM J. Scientific Computing 30(5): 2675-2708 (2008) - [j7]Cosmina Hogea, Christos Davatzikos, George Biros:
Brain--Tumor Interaction Biophysical Models for Medical Image Registration. SIAM J. Scientific Computing 30(6): 3050-3072 (2008) - [j6]Santi S. Adavani, George Biros:
Multigrid Algorithms for Inverse Problems with Linear Parabolic PDE Constraints. SIAM J. Scientific Computing 31(1): 369-397 (2008) - [j5]Evangelia I. Zacharaki, Cosmina Hogea, George Biros, Christos Davatzikos:
A Comparative Study of Biomechanical Simulators in Deformable Registration of Brain Tumor Images. IEEE Trans. Biomed. Engineering 55(3): 1233-1236 (2008) - [c14]Evangelia I. Zacharaki, Cosmina S. Hogea, Dinggang Shen, George Biros, Christos Davatzikos:
Parallel optimization of tumor model parameters for fast registration of brain tumor images. Medical Imaging: Image Processing 2008: 69140K - [c13]Rahul S. Sampath, Santi S. Adavani, Hari Sundar, Ilya Lashuk, George Biros:
Dendro: parallel algorithms for multigrid and AMR methods on 2: 1 balanced octrees. SC 2008: 18 - 2007
- [j4]Shravan K. Veerapaneni, George Biros:
A High-Order Solver for the Heat Equation in 1D domains with Moving Boundaries. SIAM J. Scientific Computing 29(6): 2581-2606 (2007) - [c12]Cosmina Hogea, Christos Davatzikos, George Biros:
Modeling Glioma Growth and Mass Effect in 3D MR Images of the Brain. MICCAI (1) 2007: 642-650 - [c11]Hari Sundar, Dinggang Shen, George Biros, Chenyang Xu, Christos Davatzikos:
Robust Computation of Mutual Information Using Spatially Adaptive Meshes. MICCAI (1) 2007: 950-958 - [c10]Hari Sundar, Rahul S. Sampath, Santi S. Adavani, Christos Davatzikos, George Biros:
Low-constant parallel algorithms for finite element simulations using linear octrees. SC 2007: 25 - 2006
- [j3]Lexing Ying, George Biros, Denis Zorin:
A high-order 3D boundary integral equation solver for elliptic PDEs in smooth domains. J. Comput. Physics 219(1): 247-275 (2006) - [c9]Volkan Akcelik, George Biros, Andrei Draganescu, Omar Ghattas, Judith Hill, Bart G. van Bloemen Waanders:
Inversion of Airborne Contaminants in a Regional Model. International Conference on Computational Science (3) 2006: 481-488 - [c8]Hari Sundar, Dinggang Shen, George Biros, Harold Litt, Christos Davatzikos:
Estimating myocardial fiber orientations by template warping. ISBI 2006: 73-76 - [c7]Christos Davatzikos, Feby Abraham, George Biros, Ragini Verma:
Correspondence detection in diffusion tensor images. ISBI 2006: 646-649 - [p1]Volkan Akçelik, George Biros, Omar Ghattas, Judith Hill, David E. Keyes, Bart G. van Bloemen Waanders:
Parallel Algorithms for PDE-Constrained Optimization. Parallel Processing for Scientific Computing 2006: 291-322 - 2005
- [j2]George Biros, Omar Ghattas:
Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part I: The Krylov-Schur Solver. SIAM J. Scientific Computing 27(2): 687-713 (2005) - [j1]George Biros, Omar Ghattas:
Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part II: The Lagrange-Newton Solver and Its Application to Optimal Control of Steady Viscous Flows. SIAM J. Scientific Computing 27(2): 714-739 (2005) - [c6]Volkan Akcelik, George Biros, Andrei Draganescu, Judith Hill, Omar Ghattas, Bart G. van Bloemen Waanders:
Dynamic Data-Driven Inversion For Terascale Simulations: Real-Time Identification Of Airborne Contaminants. SC 2005: 43 - 2004
- [c5]Volkan Akcelik, Jacobo Bielak, George Biros, Ioannis Epanomeritakis, Omar Ghattas, Loukas F. Kallivokas, Eui Joong Kim:
A Framework for Online Inversion-Based 3D Site Characterization. International Conference on Computational Science 2004: 717-724 - 2003
- [c4]Lexing Ying, George Biros, Denis Zorin, Harper Langston:
A New Parallel Kernel-Independent Fast Multipole Method. SC 2003: 14 - [c3]Volkan Akcelik, Jacobo Bielak, George Biros, Ioannis Epanomeritakis, Antonio Fernandez, Omar Ghattas, Eui Joong Kim, Julio C. López, David R. O'Hallaron, Tiankai Tu, John Urbanic:
High Resolution Forward And Inverse Earthquake Modeling on Terascale Computers. SC 2003: 52 - 2002
- [c2]Volkan Akcelik, George Biros, Omar Ghattas:
Parallel multiscale Gauss-Newton-Krylov methods for inverse wave propagation. SC 2002: 67:1-67:15
1990 – 1999
- 1999
- [c1]George Biros, Omar Ghattas:
Parallel Netwon-Krylov Methods for PDE-Constrained Optimization. SC 1999: 28
Coauthor Index
Amir Gholami
aka: Amir Gholaminejad
aka: Amir Gholaminejad
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