Google
Google Scholar
MS Academic
CiteSeerX
CORE
Semantic ScholarNuno A. Fonseca
Person information
- affiliation: University of Porto, Portugal
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2010 – today
- 2019
[j16]Awais Athar
, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A. Fonseca, Robert Petryszak, Irene Papatheodorou, Ugis Sarkans, Alvis Brazma:
ArrayExpress update - from bulk to single-cell expression data. Nucleic Acids Research 47(Database-Issue): D711-D715 (2019)- 2018
- [j15]Marcela K. Tello-Ruiz, Sushma Naithani, Joshua C. Stein, Parul Gupta, Michael Campbell, Andrew Olson, Sharon Wei, Justin Preece, Matthew J. Geniza, Yinping Jiao, Young Koung Lee, Bo Wang, Joseph Mulvaney, Kapeel Chougule, Justin Elser, Noor Al-Bader, Sunita Kumari, James Thomason, Vivek Kumar, Daniel M. Bolser, Guy Naamati, Electra Tapanari, Nuno A. Fonseca, Laura Huerta, Haider Iqbal, Maria Keays, Alfonso Muñoz-Pomer Fuentes, Y. Amy Tang, Antonio Fabregat, Peter D'Eustachio, Joel Weiser, Lincoln D. Stein, Robert Petryszak, Irene Papatheodorou, Paul J. Kersey, Patti Lockhart, Crispin Taylor, Pankaj Jaiswal, Doreen Ware:
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Research 46(Database-Issue): D1181-D1189 (2018) - [j14]Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak:
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Research 46(Database-Issue): D246-D251 (2018) - 2017
- [j13]Robert Petryszak, Nuno A. Fonseca, Anja Füllgrabe, Laura Huerta, Maria Keays, Y. Amy Tang, Alvis Brazma:
The RNASeq-er API - a gateway to systematically updated analysis of public RNA-seq data. Bioinformatics 33(14): 2218-2220 (2017) - [c26]Bruno Cavadas, Joana Ferreira, Rui Camacho, Nuno A. Fonseca, Luísa Pereira:
QmihR: Pipeline for Quantification of Microbiome in Human RNA-seq. PACBB 2017: 173-179 - 2016
- [j12]Robert Petryszak, Maria Keays, Y. Amy Tang, Nuno A. Fonseca, Elisabet Barrera, Tony Burdett, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Simon Jupp, Satu Koskinen, Oliver Mannion, Laura Huerta, Karine Megy, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings, Hendrik Weisser, James Wright, Pankaj Jaiswal, Wolfgang Huber, Jyoti Choudhary, Helen E. Parkinson, Alvis Brazma:
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Research 44(Database-Issue): 746-752 (2016) - [j11]Marcela K. Tello-Ruiz, Joshua C. Stein, Sharon Wei, Justin Preece, Andrew Olson, Sushma Naithani, Vindhya Amarasinghe, Palitha Dharmawardhana, Yinping Jiao, Joseph Mulvaney, Sunita Kumari, Kapeel Chougule, Justin Elser, Bo Wang, James Thomason, Daniel M. Bolser, Arnaud Kerhornou, Brandon Walts, Nuno A. Fonseca, Laura Huerta, Maria Keays, Y. Amy Tang, Helen E. Parkinson, Antonio Fabregat, Sheldon J. McKay, Joel Weiser, Peter D'Eustachio, Lincoln Stein, Robert Petryszak, Paul J. Kersey, Pankaj Jaiswal, Doreen Ware:
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Research 44(Database-Issue): 1133-1140 (2016) - [p1]Rui Camacho, Jorge G. Barbosa, Altino M. Sampaio, João Ladeiras, Nuno A. Fonseca, Vítor Santos Costa:
Parallel Algorithms for Multirelational Data Mining: Application to Life Science Problems. Resource Management for Big Data Platforms 2016: 339-363 - 2015
- [j10]Pedro Ferreira, Nuno A. Fonseca, Inês de Castro Dutra, Ryan W. Woods, Elizabeth S. Burnside:
Predicting malignancy from mammography findings and image-guided core biopsies. IJDMB 11(3): 257-276 (2015) - 2014
- [j9]Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A. Fonseca, Mar Gonzalez-Porta, Emma Hastings, Wolfgang Huber, Simon Jupp, Maria Keays, Nataliya Kryvych, Julie A. McMurry, John C. Marioni, James Malone, Karine Megy, Gabriella Rustici, Y. Amy Tang, Jan Taubert, Eleanor Williams, Oliver Mannion, Helen E. Parkinson, Alvis Brazma:
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Research 42(Database-Issue): 926-932 (2014) - 2013
- [j8]Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca:
Improving the performance of Transposable Elements detection tools. J. Integrative Bioinformatics 10(3) (2013) - [c25]Rui Camacho, Ruy Ramos, Nuno A. Fonseca:
AND Parallelism for ILP: The APIS System. ILP 2013: 93-106 - [c24]Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca:
Boosting the Detection of Transposable Elements Using Machine Learning. PACBB 2013: 85-91 - 2012
- [j7]Nuno A. Fonseca, Johan Rung, Alvis Brazma, John C. Marioni:
Tools for mapping high-throughput sequencing data. Bioinformatics 28(24): 3169-3177 (2012) - [j6]Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães:
Predicting the secondary structure of proteins using machine learning algorithms. IJDMB 6(6): 571-584 (2012) - [j5]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira:
ADOPS - Automatic Detection Of Positively Selected Sites. J. Integrative Bioinformatics 9(3) (2012) - [c23]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira:
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. PACBB 2012: 225-229 - 2011
- [j4]Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos Adriano Gonçalves, Carlos J. V. Simões, Rui M. M. Brito:
A Relational Learning Approach to Structure-Activity Relationships in Drug Design Toxicity Studies. J. Integrative Bioinformatics 8(3) (2011) - [c22]Pedro Ferreira, Nuno A. Fonseca, Inês de Castro Dutra, Ryan W. Woods, Elizabeth S. Burnside:
Predicting Malignancy from Mammography Findings and Surgical Biopsies. BIBM 2011: 339-344 - [c21]Pedro Ferreira, Inês de Castro Dutra, Nuno A. Fonseca, Ryan W. Woods, Elizabeth S. Burnside:
Studying the Relevance of Breast Imaging Features. HEALTHINF 2011: 337-342 - [c20]Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho:
Conceptual Clustering of Multi-Relational Data. ILP 2011: 145-159 - [c19]Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito:
Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design. PACBB 2011: 355-363 - 2010
- [c18]Nuno A. Fonseca, Max Pereira, Vítor Santos Costa, Rui Camacho:
Interactive Discriminative Mining of Chemical Fragments. ILP 2010: 59-66 - [c17]Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães:
Predicting the Start of Protein alpha-Helices Using Machine Learning Algorithms. IWPACBB 2010: 33-41
2000 – 2009
- 2009
- [j3]Nuno A. Fonseca, Ashwin Srinivasan, Fernando M. A. Silva, Rui Camacho:
Parallel ILP for distributed-memory architectures. Machine Learning 74(3): 257-279 (2009) - [j2]Nuno A. Fonseca, Vítor Santos Costa, Ricardo Rocha, Rui Camacho, Fernando M. A. Silva:
Improving the efficiency of inductive logic programming systems. Softw., Pract. Exper. 39(2): 189-219 (2009) - [c16]Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira:
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach. IWANN (2) 2009: 1001-1004 - [c15]Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca:
Visually Guiding and Controlling the Search While Mining Chemical Structures. IWANN (2) 2009: 1043-1046 - [c14]Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito:
Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases. BSB 2009: 121-132 - 2008
- [j1]Nuno A. Fonseca, Rui Camacho, Ricardo Rocha, Vítor Santos Costa:
Compile the Hypothesis Space: Do it Once, Use it Often. Fundam. Inform. 89(1): 45-67 (2008) - [c13]Vítor Santos Costa, Nuno A. Fonseca, Rui Camacho:
LogCHEM: Interactive Discriminative Mining of Chemical Structure. BIBM 2008: 421-426 - [c12]Pedro Pereira Rodrigues, Fernando M. A. Silva, Nuno A. Fonseca:
BIORED - A Genetic Algorithm for Pattern Detection in Biosequences. IWPACBB 2008: 156-165 - [c11]Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho:
k-RNN: k-relational nearest neighbour algorithm. SAC 2008: 944-948 - 2007
- [c10]Rui Camacho, Nuno A. Fonseca, Ricardo Rocha, Vítor Santos Costa:
ILP : - Just Trie It. ILP 2007: 78-87 - 2006
- [c9]Michel Ferreira, Nuno A. Fonseca, Ricardo Rocha, Tiago Soares:
Efficient and Scalable Induction of Logic Programs Using a Deductive Database System. ILP 2006: 184-198 - [c8]Nuno A. Fonseca, Fernando M. A. Silva, Rui Camacho:
April - An Inductive Logic Programming System. JELIA 2006: 481-484 - 2005
- [c7]Nuno A. Fonseca, Fernando M. A. Silva, Vítor Santos Costa, Rui Camacho:
A pipelined data-parallel algorithm for ILP. CLUSTER 2005: 1-10 - [c6]Ricardo Rocha, Nuno A. Fonseca, Vítor Santos Costa:
On Applying Tabling to Inductive Logic Programming. ECML 2005: 707-714 - [c5]Nuno A. Fonseca, Fernando M. A. Silva, Rui Camacho:
Strategies to Parallelize ILP Systems. ILP 2005: 136-153 - 2004
- [c4]Nuno A. Fonseca, Vítor Santos Costa, Fernando M. A. Silva, Rui Camacho:
On Avoiding Redundancy in Inductive Logic Programming. ILP 2004: 132-146 - 2003
- [c3]Nuno A. Fonseca, Vítor Santos Costa, Fernando M. A. Silva, Rui Camacho:
Experimental Evaluation of a Caching Technique for ILP. EPIA 2003: 151-155 - [c2]Nuno A. Fonseca, Ricardo Rocha, Rui Camacho, Fernando M. A. Silva:
Efficient Data Structures for Inductive Logic Programming. ILP 2003: 130-145
1990 – 1999
- 1998
- [c1]Nuno A. Fonseca, Vítor Santos Costa, Inês de Castro Dutra:
VisAll: A Universal Tool to Visualise Parallel Execution of Logic Programs. IJCSLP 1998: 100-114
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
load content from web.archive.org
Privacy notice: By enabling the option above, your browser will contact the API of web.archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org and opencitations.net to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy.
Citation data
Add a list of citing articles from to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy.
Tweets on dblp homepage
Show tweets from 
on the dblp homepage.
Privacy notice: By enabling the option above, your browser will contact twitter.com and twimg.com to load tweets curated by our Twitter accout. At the same time, Twitter will persitently store several cookies with your web browser. While we did signal Twitter to not track our users by setting the "dnt" flag, we do not have any control over how Twitter uses your data. So please proceed with care and consider checking the Twitter privacy policy.
last updated on 2019-12-06 20:06 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
the dblp computer science bibliography is funded by:
