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Simon Kocbek

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2010 – today

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2017
[c11]
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Simon Kocbek, Tudor Groza:
Extracting Disease-Phenotype Relations from Text with Disease-Phenotype Concept Recognisers and Association Rule Mining. CBMS 2017: 358-363
2016
[j3]
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Simon Kocbek, Lawrence Cavedon, David Martínez, Christopher Bain, Chris Mac Manus, Gholamreza Haffari, Ingrid Zukerman, Karin Verspoor:
Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources. Journal of Biomedical Informatics 64: 158-167 (2016)
[c10]
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Simon Kocbek, Tudor Groza:
Building a dictionary of lexical variants for phenotype descriptors. BioNLP@ACL 2016: 186-190
2014
[j2]
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  - journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14
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Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin:
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomedical Semantics 5: 5 (2014)
[c9]
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Simon Kocbek, Karin Verspoor, Wray L. Buntine:
Exploring Temporal Patterns in Emergency Department Triage Notes with Topic Models. ALTA 2014: 113-117
2013
[c8]
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  - conf/icbo/KocbekKPW13
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Simon Kocbek, Jin-Dong Kim, Jean-Luc Perret, Patricia L. Whetzel:
Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse. ICBO 2013: 34-39
2012
[c7]
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  - conf/swat4ls/KocbekPK12
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Simon Kocbek, Jean-Luc Perret, Jin-Dong Kim:
Visual Presentation of Mappings Between Biomedical Ontologies. SWAT4LS 2012
2011
[j1]
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Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
AGRA: analysis of gene ranking algorithms. Bioinformatics 27(8): 1185-1186 (2011)
[c6]
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Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. ICCABS 2011: 249
[c5]
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Gregor Stiglic, Simon Kocbek, Igor Pernek, Peter Kokol:
Tuning Decision Tree Models by Imposing Visual Constraints. MLDM Posters 2011: 38-48
2010
[c4]
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  - conf/cbms/KocbekSPK10
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Simon Kocbek, Gregor Stiglic, Igor Pernek, Peter Kokol:
Stability of different feature selection methods for selecting protein sequence descriptors in protein solubility classification problem. CBMS 2010: 50-55

2000 – 2009

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2009
[c3]
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Gregor Stiglic, Simon Kocbek, Peter Kokol:
Unsupervised variance based preprocessing of microarray data. CBMS 2009: 1-4
2008
[c2]
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  - conf/cbms/VerlicSKK08
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Mateja Verlic, Gregor Stiglic, Simon Kocbek, Peter Kokol:
Sentiment in Science - A Case Study of CBMS Contributions in Years 2003 to 2007. CBMS 2008: 138-143
2007
[c1]
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Simon Kocbek, Primoz Kosec, Peter Kokol, Mitja Lenic, Matjaz Debevc:
Discovering new knowledge with advanced data mining tool. ICALT 2007: 408-410

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