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ORCIDArlindo L. Oliveira
- > Home > Persons > Arlindo L. Oliveira
Publications
- 2018
[j35]Miguel Monteiro
, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira:
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1953-1959 (2018)- 2014
- [j33]Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - 2011
- [j28]Francisco Fernandes, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira, Ana T. Freitas:
Efficient alignment of pyrosequencing reads for re-sequencing applications. BMC Bioinform. 12: 163 (2011) - [j27]Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
Quantitative Modeling of the Saccharomyces cerevisiae Flr1 regulatory Network Using an S-System Formalism. J. Bioinform. Comput. Biol. 9(5): 613-630 (2011) - [j25]Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas:
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39(Database-Issue): 136-140 (2011) - [c66]Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism. HISB 2011: 69-75 - 2010
- [c64]Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira:
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops 2010: 19-26 - 2008
- [j17]Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira:
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinform. 9 (2008) - [j15]Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36(Database-Issue): 132-136 (2008) - [c50]Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA 2008: 220-231 - 2006
- [j13]Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas:
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22(24): 2996-3002 (2006) - [j12]Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34(Database-Issue): 446-451 (2006) - [j11]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 3(2): 126-140 (2006) - 2005
- [c33]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC 2005: 273-282 - 2004
- [c25]Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot:
A parallel algorithm for the extraction of structured motifs. SAC 2004: 147-153 - [c24]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
Efficient Extraction of Structured Motifs Using Box-Links. SPIRE 2004: 267-268 - 2003
- [c23]Ana T. Freitas, Arlindo L. Oliveira:
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation. DATE 2003: 10764-10769 - 2001
- [c16]Ana T. Freitas, Arlindo L. Oliveira:
Circuit partitioning techniques for power estimation using the full set of input correlations. ICECS 2001: 903-907
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