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ORCIDXiaochen Bo
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Publications
- 2024
[j55]Bijia Chen, Chao Ren, Zhangyi Ouyang, Jingxuan Xu, Kang Xu, Yaru Li, Hejiang Guo, Xuemei Bai, Mengge Tian, Xiang Xu, Yuyang Wang, Hao Li
, Xiaochen Bo, Hebing Chen:
Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair. Briefings Bioinform. 25(4) (2024)- [j54]Ruiqing Wang, Chao Ren, Tian Gao, Hao Li, Xiaochen Bo, Dahai Zhu, Dan Zhang, Hebing Chen, Yong Zhang:
SEPDB: a database of secreted proteins. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j43]Junting Wang, Huan Tao, Hao Li, Xiaochen Bo, Hebing Chen:
3D genomic organization in cancers. Quant. Biol. 11(2): 109-121 (2023) - 2022
- [j34]Hao Li, Yu Sun, Hao Hong, Xin Huang, Huan Tao, Qiya Huang, Longteng Wang, Kang Xu, Jingbo Gan, Hebing Chen, Xiaochen Bo:
Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networks. Nat. Mach. Intell. 4(4): 389-400 (2022) - [i2]Xu Wang, Huan Zhao, Weiwei Tu, Hao Li, Yu Sun, Xiaochen Bo:
Graph Neural Networks for Double-Strand DNA Breaks Prediction. CoRR abs/2201.01855 (2022) - 2021
- [j33]Shuai Jiang, Hao Li, Hao Hong, Guifang Du, Xin Huang, Yu Sun, Junting Wang, Huan Tao, Kang Xu, Cheng Li, Yang Chen, Hebing Chen, Xiaochen Bo:
Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains. Briefings Bioinform. 22(3) (2021) - 2020
- [j28]Hebing Chen, Zhuo Zhang, Shuai Jiang, Ruijiang Li, Wanying Li, Chenghui Zhao, Hao Hong, Xin Huang, Hao Li, Xiaochen Bo:
New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform. Briefings Bioinform. 21(4): 1397-1410 (2020) - [j25]Hao Hong, Shuai Jiang, Hao Li, Guifang Du, Yu Sun, Huan Tao, Cheng Quan, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Cheng Li, Hebing Chen, Xiaochen Bo:
DeepHiC: A generative adversarial network for enhancing Hi-C data resolution. PLoS Comput. Biol. 16(2) (2020) - 2019
- [j24]Zhuo Zhang, Hao Li, Shuai Jiang, Ruijiang Li, Wanying Li, Hebing Chen, Xiaochen Bo:
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data. Briefings Bioinform. 20(4): 1524-1541 (2019) - [j22]Xin Huang, Xudong Gao, Wanying Li, Shuai Jiang, Ruijiang Li, Hao Hong, Chenghui Zhao, Pingkun Zhou, Hebing Chen, Xiaochen Bo, Hao Li:
Stable H3K4me3 is associated with transcription initiation during early embryo development. Bioinform. 35(20): 3931-3936 (2019) - 2017
- [j19]Hebing Chen, Shuai Jiang, Zhuo Zhang, Hao Li, Yiming Lu, Xiaochen Bo:
Exploring spatially adjacent TFBS-clustered regions with Hi-C data. Bioinform. 33(17): 2611-2614 (2017) - 2016
- [j16]Feng Liu, Chao Ren, Hao Li, Pingkun Zhou, Xiaochen Bo, Wenjie Shu:
De novo identification of replication-timing domains in the human genome by deep learning. Bioinform. 32(5): 641-649 (2016)
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