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ORCIDJos Kleinjans
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- affiliation: Maastricht University, The Netherlands
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Journal Articles
- 2021
[j12]Rajinder Gupta
, Yannick Schrooders, Marcha Verheijen, Adrian Roth, Jos Kleinjans, Florian Caiment:
FuSe: a tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts. Bioinform. 37(3): 375-381 (2021)- 2019
- [j11]T. J. M. Kuijpers, J. E. J. Wolters, Jos C. S. Kleinjans, Danyel G. J. Jennen:
DynOVis: a web tool to study dynamic perturbations for capturing dose-over-time effects in biological networks. BMC Bioinform. 20(1): 417:1-417:10 (2019) - 2016
- [j10]Rachel Cavill, Danyel Jennen, Jos Kleinjans, Jacob J. Briedé:
Transcriptomic and metabolomic data integration. Briefings Bioinform. 17(5): 891-901 (2016) - [j9]Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig:
ToxDB: pathway-level interpretation of drug-treatment data. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j8]Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans:
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31(9): 1505-1507 (2015) - [j7]Diana M. Hendrickx, Danyel G. J. Jennen, Jacob J. Briedé, Rachel Cavill, Theo M. de Kok, Jos C. S. Kleinjans:
Pattern recognition methods to relate time profiles of gene expression with phenotypic data: a comparative study. Bioinform. 31(13): 2115-2122 (2015) - [j6]Maarten Coonen, Daniel Theunissen, Jos Kleinjans, Danyel Jennen:
MagiCMicroRna: a web implementation of AgiMicroRna using shiny. Source Code Biol. Medicine 10: 4 (2015) - 2011
- [j5]Danyel Jennen, Ainhoa Ruiz-Aracama, Christina Magkoufopoulou, Ad Peijnenburg, Arjen Lommen, Joost van Delft, Jos Kleinjans:
Integrating transcriptomics and metabonomics to unravel modes-of-action of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells. BMC Syst. Biol. 5: 139 (2011) - 2010
- [j4]Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors:
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining. J. Cheminformatics 2: 3 (2010) - [j3]Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors:
Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining (Correction). J. Cheminformatics 2: 4 (2010) - 2009
- [j2]Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. van Mulligen, Jos Kleinjans, Jan A. Kors:
A dictionary to identify small molecules and drugs in free text. Bioinform. 25(22): 2983-2991 (2009) - 2008
- [j1]Stefano Moretti, Danitsja van Leeuwen, Hans Gmuender, Stefano Bonassi, Joost van Delft, Jos Kleinjans, Fioravante Patrone, Domenico Franco Merlo:
Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution. BMC Bioinform. 9 (2008)
Conference and Workshop Papers
- 2022
- [c1]Nhan Nguyen, Matthias Lienhard, Ralf Herwig, Jos Kleinjans, Danyel Jennen:
A bioinformatics workflow to detect genes with DNA methylation alterations: a case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin. ICBBB 2022: 63-69
Coauthor Index
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