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ORCIDTravis Gagie
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- affiliation: Dalhousie University, Halifax, NS, Canada
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2020 – today
- 2025
[i127]Nathaniel K. Brown, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie:
KeBaB: k-mer based breaking for finding super-maximal exact matches. CoRR abs/2502.20338 (2025)- 2024
- [j70]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Pfp-fm: an accelerated FM-index. Algorithms Mol. Biol. 19(1): 15 (2024) - [j69]Nieves R. Brisaboa
, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro:
Two-Dimensional Block Trees. Comput. J. 67(1): 391-406 (2024) - [j68]Brona Brejová, Travis Gagie, Eva Herencsárová, Tomás Vinar:
Maximum-scoring path sets on pangenome graphs of constant treewidth. Frontiers Bioinform. 4 (2024) - [c111]Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Yuri Pirola:
Solving the Minimal Positional Substring Cover Problem in Sublinear Space. CPM 2024: 12:1-12:16 - [c110]Adrián Goga, Lore Depuydt, Nathaniel K. Brown, Jan Fostier, Travis Gagie, Gonzalo Navarro:
Faster Maximal Exact Matches with Lazy LCP Evaluation. DCC 2024: 123-132 - [c109]Aaron Hong, Christina Boucher, Travis Gagie, Yansong Li, Norbert Zeh:
Another virtue of wavelet forests. DCC 2024: 559 - [c108]Travis Gagie:
How to Find Long Maximal Exact Matches and Ignore Short Ones. DLT 2024: 131-140 - [c107]Travis Gagie, Adrián Goga, Artur Jez, Gonzalo Navarro:
Space-Efficient Conversions from SLPs. LATIN (1) 2024: 146-161 - [c106]Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén:
Wheeler Maps. LATIN (1) 2024: 178-192 - [c105]Aaron Hong, Christina Boucher, Travis Gagie, Yansong Li, Norbert Zeh:
Another Virtue of Wavelet Forests. SPIRE 2024: 184-191 - [c104]Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier:
b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index. WABI 2024: 10:1-10:18 - [c103]Dominika Draesslerová, Omar Y. Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini, Gonzalo Navarro:
Taxonomic Classification with Maximal Exact Matches in KATKA Kernels and Minimizer Digests. SEA 2024: 10:1-10:13 - [i126]Dominika Draesslerová, Omar Y. Ahmed, Travis Gagie, Jan Holub, Ben Langmead, Giovanni Manzini, Gonzalo Navarro:
Taxonomic classification with maximal exact matches in KATKA kernels and minimizer digests. CoRR abs/2402.06935 (2024) - [i125]Travis Gagie:
How to Find Long Maximal Exact Matches and Ignore Short Ones. CoRR abs/2403.02008 (2024) - [i124]Peter Peresíni, Nathaniel K. Brown, Travis Gagie, Ben Langmead:
MIOV: Reordering MOVI for even better locality. CoRR abs/2407.18956 (2024) - [i123]Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Marinella Sciortino:
Movelet Trees. CoRR abs/2408.04537 (2024) - [i122]Dustin Cobas, Travis Gagie, Gonzalo Navarro:
Fast and Small Subsampled R-indexes. CoRR abs/2409.14654 (2024) - [i121]Travis Gagie:
Tag arrays. CoRR abs/2411.15291 (2024) - 2023
- [j67]Davide Cozzi, Massimiliano Rossi, Simone Rubinacci, Travis Gagie, Dominik Köppl, Christina Boucher, Paola Bonizzoni:
μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data. Bioinform. 39(9) (2023) - [j66]Travis Gagie, Mozhgan Saeidi, Allan Sapucaia:
Ruler Wrapping. Int. J. Comput. Geom. Appl. 33(1&2): 3-12 (2023) - [j65]Guillermo de Bernardo, Travis Gagie, Susana Ladra, Gonzalo Navarro, Diego Seco:
Faster compressed quadtrees. J. Comput. Syst. Sci. 131: 86-104 (2023) - [c102]Xing Lyu, Travis Gagie, Meng He, Yakov Nekrich, Norbert Zeh:
Sum-of-Local-Effects Data Structures for Separable Graphs. COCOON (1) 2023: 195-206 - [c101]Igor Tatarnikov, Ardavan Shahrabi Farahani, Sana Kashgouli, Travis Gagie:
MONI Can Find k-MEMs. CPM 2023: 26:1-26:14 - [c100]Marco Oliva, Travis Gagie, Christina Boucher:
Recursive Prefix-Free Parsing for Building Big BWTs. DCC 2023: 62-70 - [c99]Alessio Conte, Nicola Cotumaccio, Travis Gagie, Giovanni Manzini, Nicola Prezza, Marinella Sciortino:
Computing matching statistics on Wheeler DFAs. DCC 2023: 150-159 - [c98]César Martínez-Guardiola, Nathaniel K. Brown, Fernando Silva-Coira, Dominik Köppl, Travis Gagie, Susana Ladra:
Augmented Thresholds for MONI. DCC 2023: 268-277 - [c97]Travis Gagie:
Flexible Grammar-based Indexes (invited paper). ITAT 2023: 2 - [c96]Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi:
Data Structures for SMEM-Finding in the PBWT. SPIRE 2023: 89-101 - [c95]Nicola Cotumaccio, Travis Gagie, Dominik Köppl, Nicola Prezza:
Space-Time Trade-Offs for the LCP Array of Wheeler DFAs. SPIRE 2023: 143-156 - [c94]Travis Gagie, Meng He, Michael St Denis:
Dynamic Compact Planar Embeddings. SPIRE 2023: 233-245 - [c93]Travis Gagie, Sana Kashgouli, Gonzalo Navarro:
A Simple Grammar-Based Index for Finding Approximately Longest Common Substrings. SPIRE 2023: 246-252 - [c92]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Acceleration of FM-Index Queries Through Prefix-Free Parsing. WABI 2023: 13:1-13:16 - [i120]Alessio Conte, Nicola Cotumaccio, Travis Gagie, Giovanni Manzini, Nicola Prezza, Marinella Sciortino:
Computing matching statistics on Wheeler DFAs. CoRR abs/2301.05338 (2023) - [i119]Xing Lyu, Travis Gagie, Meng He, Yakov Nekrich, Norbert Zeh:
Sum-of-Local-Effects Data Structures for Separable Graphs. CoRR abs/2305.03240 (2023) - [i118]Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie:
Acceleration of FM-index Queries Through Prefix-free Parsing. CoRR abs/2305.05893 (2023) - [i117]Nicola Cotumaccio, Travis Gagie, Dominik Köppl, Nicola Prezza:
Space-time Trade-offs for the LCP Array of Wheeler DFAs. CoRR abs/2306.05684 (2023) - [i116]Christina Boucher, Travis Gagie, Aaron Hong, Yansong Li, Norbert Zeh:
Another virtue of wavelet forests? CoRR abs/2308.07809 (2023) - [i115]Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén:
Wheeler maps. CoRR abs/2308.09836 (2023) - [i114]Adrián Goga, Lore Depuydt, Nathaniel K. Brown, Jan Fostier, Travis Gagie, Gonzalo Navarro:
Faster Maximal Exact Matches with Lazy LCP Evaluation. CoRR abs/2311.04538 (2023) - [i113]Lore Depuydt, Travis Gagie, Ben Langmead, Giovanni Manzini, Nicola Prezza:
Suffixient Sets. CoRR abs/2312.01359 (2023) - 2022
- [j64]Jarno N. Alanko, Ilya B. Slizovskiy, Daniel Lokshtanov, Travis Gagie, Noelle R. Noyes, Christina Boucher:
Syotti: scalable bait design for DNA enrichment. Bioinform. 38(Supplement_1): i177-i184 (2022) - [j63]Travis Gagie:
Preface to Special Issue for DCC 2020. Inf. Comput. 285(Part): 104880 (2022) - [j62]Massimiliano Rossi, Marco Oliva, Ben Langmead, Travis Gagie, Christina Boucher:
MONI: A Pangenomic Index for Finding Maximal Exact Matches. J. Comput. Biol. 29(2): 169-187 (2022) - [j61]Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher:
Finding Maximal Exact Matches Using the r-Index. J. Comput. Biol. 29(2): 188-194 (2022) - [j60]Paolo Ferragina, Giovanni Manzini, Travis Gagie, Dominik Köppl, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. Proc. VLDB Endow. 15(10): 2175-2187 (2022) - [j59]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 193 (2022) - [j58]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Correction to: Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 228 (2022) - [j57]Antonio Fariña, Travis Gagie, Szymon Grabowski, Giovanni Manzini, Gonzalo Navarro, Alberto Ordóñez Pereira:
Efficient and compact representations of some non-canonical prefix-free codes. Theor. Comput. Sci. 907: 11-25 (2022) - [c91]Marco Oliva, Davide Cenzato, Massimiliano Rossi, Zsuzsanna Lipták, Travis Gagie, Christina Boucher:
CSTs for Terabyte-Sized Data. DCC 2022: 93-102 - [c90]Nathaniel K. Brown, Travis Gagie, Massimiliano Rossi:
RLBWT Tricks. DCC 2022: 444 - [c89]Travis Gagie:
Simple Worst-Case Optimal Adaptive Prefix-Free Coding. DCC 2022: 453 - [c88]Travis Gagie:
Simple Worst-Case Optimal Adaptive Prefix-Free Coding. ESA 2022: 57:1-57:5 - [c87]Travis Gagie, Sana Kashgouli, Ben Langmead:
KATKA: A KRAKEN-Like Tool with k Given at Query Time. SPIRE 2022: 191-197 - [c86]Travis Gagie:
On Representing the Degree Sequences of Sublogarithmic-Degree Wheeler Graphs. SPIRE 2022: 250-256 - [c85]Nathaniel K. Brown, Travis Gagie, Massimiliano Rossi:
RLBWT Tricks. SEA 2022: 16:1-16:16 - [i112]Travis Gagie:
MONI can find k-MEMs. CoRR abs/2202.05085 (2022) - [i111]Paolo Ferragina, Travis Gagie, Dominik Köppl, Giovanni Manzini, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. CoRR abs/2203.14540 (2022) - [i110]Travis Gagie:
An n Hk-compressed searchable partial-sums data structure for static sequences of sublogarithmic positive integers. CoRR abs/2204.07916 (2022) - [i109]Travis Gagie, Sana Kashgouli:
KATKA: A KRAKEN-like tool with k given at query time. CoRR abs/2206.06053 (2022) - [i108]Travis Gagie, Giovanni Manzini, Marinella Sciortino:
Teaching the Burrows-Wheeler Transform via the Positional Burrows-Wheeler Transform. CoRR abs/2208.09840 (2022) - [i107]Adrián Goga, Andrej Baláz, Alessia Petescia, Travis Gagie:
MARIA: Multiple-alignment r-index with aggregation. CoRR abs/2209.09218 (2022) - [i106]Xing Lyu, Travis Gagie:
Rectangular Ruler Wrapping. CoRR abs/2210.01954 (2022) - [i105]César Martínez-Guardiola, Nathaniel K. Brown, Fernando Silva-Coira, Dominik Köppl, Travis Gagie, Susana Ladra:
Augmented Thresholds for MONI. CoRR abs/2211.07794 (2022) - [i104]Travis Gagie:
Space-efficient RLZ-to-LZ77 conversion. CoRR abs/2211.13254 (2022) - [i103]Nick Fagan, Jorge Hermo González, Travis Gagie:
A fast and simple O(z log n)-space index for finding approximately longest common substrings. CoRR abs/2211.13434 (2022) - [i102]Travis Gagie, Artur Jez, Gonzalo Navarro:
Space-efficient conversions from SLPs. CoRR abs/2212.02327 (2022) - 2021
- [j56]Djamal Belazzougui, Travis Gagie, J. Ian Munro, Gonzalo Navarro, Yakov Nekrich:
Range Majorities and Minorities in Arrays. Algorithmica 83(6): 1707-1733 (2021) - [j55]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
An index for moving objects with constant-time access to their compressed trajectories. Int. J. Geogr. Inf. Sci. 35(7): 1392-1424 (2021) - [j54]Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Block trees. J. Comput. Syst. Sci. 117: 1-22 (2021) - [j53]Patrick Hagge Cording, Travis Gagie, Mathias Bæk Tejs Knudsen, Tomasz Kociumaka:
Maximal unbordered factors of random strings. Theor. Comput. Sci. 852: 78-83 (2021) - [c84]Christina Boucher, Ondrej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, Gonzalo Navarro, Massimiliano Rossi:
PFP Compressed Suffix Trees. ALENEX 2021: 60-72 - [c83]Travis Gagie, Sebastian Wild:
Succinct Euler-Tour Trees. CCCG 2021: 368-376 - [c82]Dustin Cobas, Travis Gagie, Gonzalo Navarro:
A Fast and Small Subsampled R-Index. CPM 2021: 13:1-13:16 - [c81]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. DCC 2021: 193-202 - [c80]Marco Oliva, Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie, Christina Boucher:
Efficiently Merging r-indexes. DCC 2021: 203-212 - [c79]Travis Gagie, Garance Gourdel, Giovanni Manzini:
Compressing and Indexing Aligned Readsets. WABI 2021: 13:1-13:21 - [i101]Travis Gagie:
$r$-indexing Wheeler graphs. CoRR abs/2101.12341 (2021) - [i100]Dustin Cobas, Travis Gagie, Gonzalo Navarro:
A Fast and Small Subsampled R-index. CoRR abs/2103.15329 (2021) - [i99]Travis Gagie:
Compact Euler Tours of Trees with Small Maximum Degree. CoRR abs/2105.04965 (2021) - [i98]Travis Gagie:
Simple Worst-Case Optimal Adaptive Prefix-Free Coding. CoRR abs/2109.02997 (2021) - [i97]Travis Gagie, Mozhgan Saeidi, Allan Sapucaia:
Ruler Wrapping. CoRR abs/2109.14497 (2021) - [i96]Nathaniel K. Brown, Travis Gagie, Massimiliano Rossi:
RLBWT Tricks. CoRR abs/2112.04271 (2021) - 2020
- [j52]Travis Gagie, Meng He, Gonzalo Navarro:
Compressed Dynamic Range Majority and Minority Data Structures. Algorithmica 82(7): 2063-2086 (2020) - [j51]Hideo Bannai, Travis Gagie, Gary Hoppenworth, Simon J. Puglisi, Luís M. S. Russo:
More Time-Space Tradeoffs for Finding a Shortest Unique Substring. Algorithms 13(9): 234 (2020) - [j50]Leo Ferres, José Fuentes-Sepúlveda, Travis Gagie, Meng He, Gonzalo Navarro:
Fast and compact planar embeddings. Comput. Geom. 89: 101630 (2020) - [j49]Travis Gagie, Gonzalo Navarro:
Computation over compressed data. Inf. Comput. 273: 104515 (2020) - [j48]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
Fully Functional Suffix Trees and Optimal Text Searching in BWT-Runs Bounded Space. J. ACM 67(1): 2:1-2:54 (2020) - [j47]Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini:
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. J. Comput. Biol. 27(4): 500-513 (2020) - [j46]Taher Mun, Alan Kuhnle, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini:
Matching Reads to Many Genomes with the r-Index. J. Comput. Biol. 27(4): 514-518 (2020) - [j45]Hideo Bannai, Travis Gagie, Tomohiro I:
Refining the r-index. Theor. Comput. Sci. 812: 96-108 (2020) - [j44]Travis Gagie, Meng He, Gonzalo Navarro, Carlos Ochoa:
Tree path majority data structures. Theor. Comput. Sci. 833: 107-119 (2020) - [c78]Philip Bille, Mikko Berggren Ettienne, Travis Gagie, Inge Li Gørtz, Nicola Prezza:
Decompressing Lempel-Ziv Compressed Text. DCC 2020: 143-152 - [c77]Travis Gagie, Tomohiro I, Giovanni Manzini, Gonzalo Navarro, Hiroshi Sakamoto, Louisa Seelbach Benkner, Yoshimasa Takabatake:
Practical Random Access to SLP-Compressed Texts. SPIRE 2020: 221-231 - [i95]Christina Boucher, Ondrej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, Gonzalo Navarro, Massimiliano Rossi:
PFP Data Structures. CoRR abs/2006.11687 (2020) - [i94]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. CoRR abs/2011.05610 (2020)
2010 – 2019
- 2019
- [j43]Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, Taher Mun:
Prefix-free parsing for building big BWTs. Algorithms Mol. Biol. 14(1): 13:1-13:15 (2019) - [j42]Gianni Decaroli, Travis Gagie, Giovanni Manzini:
A compact index for order-preserving pattern matching. Softw. Pract. Exp. 49(6): 1041-1051 (2019) - [j41]Veli Mäkinen, Alexandru I. Tomescu, Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi:
Sparse Dynamic Programming on DAGs with Small Width. ACM Trans. Algorithms 15(2): 29:1-29:21 (2019) - [j40]Travis Gagie, Meng He, Gonzalo Navarro:
Path queries on functions. Theor. Comput. Sci. 770: 34-50 (2019) - [c76]Diego Díaz-Domínguez, Travis Gagie, Gonzalo Navarro:
Simulating the DNA Overlap Graph in Succinct Space. CPM 2019: 26:1-26:20 - [c75]Jarno N. Alanko, Travis Gagie, Gonzalo Navarro, Louisa Seelbach Benkner:
Tunneling on Wheeler Graphs. DCC 2019: 122-131 - [c74]Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini:
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. RECOMB 2019: 158-173 - [c73]Travis Gagie, Tomohiro I, Giovanni Manzini, Gonzalo Navarro, Hiroshi Sakamoto, Yoshimasa Takabatake:
Rpair: Rescaling RePair with Rsync. SPIRE 2019: 35-44 - [c72]Diego Arroyuelo, Guillermo de Bernardo, Travis Gagie, Gonzalo Navarro:
Faster Dynamic Compressed d-ary Relations. SPIRE 2019: 419-433 - [r4]Travis Gagie, Gonzalo Navarro:
Compressed Indexes for Repetitive Textual Datasets. Encyclopedia of Big Data Technologies 2019 - [i93]Diego Díaz-Domínguez, Travis Gagie, Gonzalo Navarro:
Simulating the DNA String Graph in Succinct Space. CoRR abs/1901.10453 (2019) - [i92]Travis Gagie, Tomohiro I, Giovanni Manzini, Gonzalo Navarro, Hiroshi Sakamoto, Yoshimasa Takabatake:
Rpair: Rescaling RePair with Rsync. CoRR abs/1906.00809 (2019) - [i91]Taher Mun, Alan Kuhnle, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini:
Matching reads to many genomes with the r-index. CoRR abs/1908.01263 (2019) - [i90]Travis Gagie, Tomohiro I, Giovanni Manzini, Gonzalo Navarro, Hiroshi Sakamoto, Louisa Seelbach Benkner, Yoshimasa Takabatake:
Tree-Shape Grammars for Random Access. CoRR abs/1910.07145 (2019) - [i89]Diego Arroyuelo, Guillermo de Bernardo, Travis Gagie, Gonzalo Navarro:
Faster Dynamic Compressed d-ary Relations. CoRR abs/1911.08971 (2019) - [i88]Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Jens Stoye:
25 Years of the Burrows-Wheeler Transform (Dagstuhl Seminar 19241). Dagstuhl Reports 9(6): 55-68 (2019) - 2018
- [j39]Travis Gagie, Gonzalo Navarro:
Guest Editorial: Special Issue on Compact Data Structures. Algorithmica 80(7): 1983-1985 (2018) - [j38]Victoria G. Crawford, Alan Kuhnle, Christina Boucher, Rayan Chikhi, Travis Gagie:
Practical dynamic de Bruijn graphs. Bioinform. 34(24): 4189-4195 (2018) - [j37]Andrea Farruggia, Travis Gagie, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Relative Suffix Trees. Comput. J. 61(5): 773-788 (2018) - [j36]Hideo Bannai, Travis Gagie, Shunsuke Inenaga, Juha Kärkkäinen, Dominik Kempa, Marcin Piatkowski, Shiho Sugimoto:
Diverse Palindromic Factorization is NP-Complete. Int. J. Found. Comput. Sci. 29(2): 143-164 (2018) - [j35]Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi:
Bidirectional Variable-Order de Bruijn Graphs. Int. J. Found. Comput. Sci. 29(8): 1279-1295 (2018) - [j34]Philip Bille, Travis Gagie, Inge Li Gørtz, Nicola Prezza:
A separation between RLSLPs and LZ77. J. Discrete Algorithms 50: 36-39 (2018) - [c71]Hideo Bannai, Travis Gagie, Tomohiro I:
Online LZ77 Parsing and Matching Statistics with RLBWTs. CPM 2018: 7:1-7:12 - [c70]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro:
Two-Dimensional Block Trees. DCC 2018: 227-236 - [c69]Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro:
Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication. DCC 2018: 307-314 - [c68]Travis Gagie, Meng He, Gonzalo Navarro:
Tree Path Majority Data Structures. ISAAC 2018: 68:1-68:12 - [c67]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
On the Approximation Ratio of Lempel-Ziv Parsing. LATIN 2018: 490-503 - [c66]Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru I. Tomescu, Veli Mäkinen:
Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear Chaining Extended. RECOMB 2018: 105-121 - [c65]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
Optimal-Time Text Indexing in BWT-runs Bounded Space. SODA 2018: 1459-1477 - [c64]Christina Boucher, Travis Gagie, Alan Kuhnle, Giovanni Manzini:
Prefix-Free Parsing for Building Big BWTs. WABI 2018: 2:1-2:16 - [e1]Travis Gagie, Alistair Moffat, Gonzalo Navarro, Ernesto Cuadros-Vargas:
String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings. Lecture Notes in Computer Science 11147, Springer 2018, ISBN 978-3-030-00478-1 [contents] - [i87]Hideo Bannai, Travis Gagie, Tomohiro I:
Online LZ77 Parsing and Matching Statistics with RLBWTs. CoRR abs/1802.05906 (2018) - [i86]Philip Bille, Mikko Berggren Ettienne, Travis Gagie, Inge Li Gørtz, Nicola Prezza:
Fast Lempel-Ziv Decompression in Linear Space. CoRR abs/1802.10347 (2018) - [i85]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro:
Two-Dimensional Block Trees. CoRR abs/1803.01362 (2018) - [i84]Travis Gagie, Giovanni Manzini:
Prefix-Free Parsing for Building Big BWTs. CoRR abs/1803.11245 (2018) - [i83]Diego Díaz-Domínguez, Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Gonzalo Navarro, Simon J. Puglisi:
Assembling Omnitigs using Hidden-Order de Bruijn Graphs. CoRR abs/1805.05228 (2018) - [i82]Travis Gagie, Meng He, Gonzalo Navarro:
Tree Path Majority Data Structures. CoRR abs/1806.01804 (2018) - [i81]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
Fully-Functional Suffix Trees and Optimal Text Searching in BWT-runs Bounded Space. CoRR abs/1809.02792 (2018) - [i80]Travis Gagie, Garance Gourdel, Gonzalo Navarro, Jared Simpson:
The Read-Optimized Burrows-Wheeler Transform. CoRR abs/1809.07320 (2018) - [i79]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
Relative compression of trajectories. CoRR abs/1810.05753 (2018) - [i78]Jarno Alanko, Travis Gagie, Gonzalo Navarro, Louisa Seelbach Benkner:
Tunneling on Wheeler Graphs. CoRR abs/1811.02457 (2018) - [i77]Alan Kuhnle, Taher Mun, Christina Boucher, Travis Gagie, Ben Langmead, Giovanni Manzini:
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. CoRR abs/1811.06933 (2018) - 2017
- [j33]Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher:
Succinct colored de Bruijn graphs. Bioinform. 33(20): 3181-3187 (2017) - [j32]Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document retrieval on repetitive string collections. Inf. Retr. J. 20(3): 253-291 (2017) - [j31]Felipe A. Louza, Travis Gagie, Guilherme P. Telles:
Burrows-Wheeler transform and LCP array construction in constant space. J. Discrete Algorithms 42: 14-22 (2017) - [j30]Travis Gagie:
Preface - Compact Data Structures. J. Discrete Algorithms 43: 1 (2017) - [j29]Travis Gagie, Giovanni Manzini, Daniel Valenzuela:
Compressed Spaced Suffix Arrays. Math. Comput. Sci. 11(2): 151-157 (2017) - [j28]Travis Gagie, Christopher Hoobin, Simon J. Puglisi:
Block Graphs in Practice. Math. Comput. Sci. 11(2): 191-196 (2017) - [j27]Amihood Amir, Alberto Apostolico, Travis Gagie, Gad M. Landau:
String cadences. Theor. Comput. Sci. 698: 4-8 (2017) - [j26]Travis Gagie, Giovanni Manzini, Jouni Sirén:
Wheeler graphs: A framework for BWT-based data structures. Theor. Comput. Sci. 698: 67-78 (2017) - [c63]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Flexible Indexing of Repetitive Collections. CiE 2017: 162-174 - [c62]Travis Gagie, Meng He, Gonzalo Navarro:
Path Queries on Functions. CPM 2017: 5:1-5:15 - [c61]Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis A. B. Kowada, Jens Stoye:
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. CPM 2017: 19:1-19:9 - [c60]Gianni Decaroli, Travis Gagie, Giovanni Manzini:
A Compact Index for Order-Preserving Pattern Matching. DCC 2017: 72-81 - [c59]Travis Gagie, Meng He, Gonzalo Navarro:
Compressed Dynamic Range Majority Data Structures. DCC 2017: 260-269 - [c58]Travis Gagie, Giovanni Manzini, Rossano Venturini:
An Encoding for Order-Preserving Matching. ESA 2017: 38:1-38:15 - [c57]Golnaz Badkobeh, Travis Gagie, Shunsuke Inenaga, Tomasz Kociumaka, Dmitry Kosolobov, Simon J. Puglisi:
On Two LZ78-style Grammars: Compression Bounds and Compressed-Space Computation. SPIRE 2017: 51-67 - [c56]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
Efficient Compression and Indexing of Trajectories. SPIRE 2017: 103-115 - [c55]Leo Ferres, José Fuentes-Sepúlveda, Travis Gagie, Meng He, Gonzalo Navarro:
Fast and Compact Planar Embeddings. WADS 2017: 385-396 - [i76]Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis A. B. Kowada, Jens Stoye:
Fast and Simple Jumbled Indexing for Binary RLE Strings. CoRR abs/1702.01280 (2017) - [i75]Leo Ferres, José Fuentes-Sepúlveda, Travis Gagie, Meng He, Gonzalo Navarro:
Parallel Construction of Compact Planar Embeddings. CoRR abs/1705.00415 (2017) - [i74]Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru I. Tomescu, Veli Mäkinen:
Speeding up Dynamic Programming on DAGs through a Fast Approximation of Path Cover. CoRR abs/1705.08754 (2017) - [i73]Golnaz Badkobeh, Travis Gagie, Shunsuke Inenaga, Dmitry Kosolobov, Simon J. Puglisi:
On Two LZ78-style Grammars: Compression Bounds and Compressed-Space Computation. CoRR abs/1705.09538 (2017) - [i72]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
Fast Locating with the RLBWT. CoRR abs/1705.10382 (2017) - [i71]Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro:
Exploiting Computation-Friendly Graph Compression Methods. CoRR abs/1708.07271 (2017) - [i70]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
Efficient Compression and Indexing of Trajectories. CoRR abs/1710.01952 (2017) - [i69]Philip Bille, Travis Gagie, Inge Li Gørtz, Nicola Prezza:
A Separation Between Run-Length SLPs and LZ77. CoRR abs/1711.07270 (2017) - 2016
- [c54]Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi:
Bidirectional Variable-Order de Bruijn Graphs. LATIN 2016: 164-178 - [c53]Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. SPIRE 2016: 1-14 - [c52]Antonio Fariña, Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Alberto Ordóñez Pereira:
Efficient and Compact Representations of Some Non-canonical Prefix-Free Codes. SPIRE 2016: 50-60 - [c51]Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali:
Fully Dynamic de Bruijn Graphs. SPIRE 2016: 145-152 - [c50]Travis Gagie, Simon J. Puglisi, Daniel Valenzuela:
Analyzing Relative Lempel-Ziv Reference Construction. SPIRE 2016: 160-165 - [c49]Golnaz Badkobeh, Travis Gagie, Szymon Grabowski, Yuto Nakashima, Simon J. Puglisi, Shiho Sugimoto:
Longest Common Abelian Factors and Large Alphabets. SPIRE 2016: 254-259 - [r3]Travis Gagie, Giovanni Manzini:
Dictionary-Based Data Compression. Encyclopedia of Algorithms 2016: 538-543 - [r2]Travis Gagie:
Rank and Select Operations on Sequences. Encyclopedia of Algorithms 2016: 1776-1780 - [i68]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Practical combinations of repetition-aware data structures. CoRR abs/1604.06002 (2016) - [i67]Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. CoRR abs/1605.04421 (2016) - [i66]Antonio Fariña, Travis Gagie, Giovanni Manzini, Gonzalo Navarro, Alberto Ordóñez Pereira:
Efficient and Compact Representations of Some Non-Canonical Prefix-Free Codes. CoRR abs/1605.06615 (2016) - [i65]Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Retrieval on Repetitive String Collections. CoRR abs/1605.09362 (2016) - [i64]Djamal Belazzougui, Travis Gagie, J. Ian Munro, Gonzalo Navarro, Yakov Nekrich:
Range Majorities and Minorities in Arrays. CoRR abs/1606.04495 (2016) - [i63]Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali:
Fully Dynamic de Bruijn Graphs. CoRR abs/1607.04909 (2016) - [i62]Leo Ferres, José Fuentes-Sepúlveda, Travis Gagie, Meng He, Gonzalo Navarro:
Fast and Compact Planar Embeddings. CoRR abs/1610.00130 (2016) - [i61]Travis Gagie, Giovanni Manzini:
Toward a Succinct Index for Order-Preserving Pattern Matching. CoRR abs/1610.02865 (2016) - [i60]Amihood Amir, Alberto Apostolico, Travis Gagie, Gad M. Landau:
String Cadences. CoRR abs/1610.03337 (2016) - [i59]Travis Gagie, Meng He, Gonzalo Navarro:
Compressed Dynamic Range Majority Data Structures. CoRR abs/1611.01835 (2016) - [i58]Felipe A. Louza, Travis Gagie, Guilherme P. Telles:
Burrows-Wheeler transform and LCP array construction in constant space. CoRR abs/1611.08198 (2016) - 2015
- [j25]Travis Gagie, Danny Hermelin, Gad M. Landau, Oren Weimann:
Binary Jumbled Pattern Matching on Trees and Tree-Like Structures. Algorithmica 73(3): 571-588 (2015) - [j24]Travis Gagie, Pawel Gawrychowski, Simon J. Puglisi:
Approximate pattern matching in LZ77-compressed texts. J. Discrete Algorithms 32: 64-68 (2015) - [j23]Alexandru I. Tomescu, Travis Gagie, Alexandru Popa, Romeo Rizzi, Anna Kuosmanen, Veli Mäkinen:
Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 12(6): 1345-1354 (2015) - [j22]Travis Gagie, Gonzalo Navarro, Yakov Nekrich, Alberto Ordóñez Pereira:
Efficient and Compact Representations of Prefix Codes. IEEE Trans. Inf. Theory 61(9): 4999-5011 (2015) - [c48]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Composite Repetition-Aware Data Structures. CPM 2015: 26-39 - [c47]Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Queries on LZ-Bounded Encodings. DCC 2015: 83-92 - [c46]Travis Gagie, Javier I. González-Nova, Susana Ladra, Gonzalo Navarro, Diego Seco:
Faster Compressed Quadtrees. DCC 2015: 93-102 - [c45]Travis Gagie, Aleksi Hartikainen, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Counting in Compressed Space. DCC 2015: 103-112 - [c44]Christina Boucher, Alexander Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane:
Variable-Order de Bruijn Graphs. DCC 2015: 383-392 - [c43]Hideo Bannai, Travis Gagie, Shunsuke Inenaga, Juha Kärkkäinen, Dominik Kempa, Marcin Piatkowski, Simon J. Puglisi, Shiho Sugimoto:
Diverse Palindromic Factorization Is NP-complete. DLT 2015: 85-96 - [c42]Johannes Fischer, Travis Gagie, Pawel Gawrychowski, Tomasz Kociumaka:
Approximating LZ77 via Small-Space Multiple-Pattern Matching. ESA 2015: 533-544 - [c41]Christina Boucher, Alexander Bowe, Travis Gagie, Giovanni Manzini, Jouni Sirén:
Relative Select. SPIRE 2015: 149-155 - [i57]Djamal Belazzougui, Fabio Cunial, Travis Gagie, Nicola Prezza, Mathieu Raffinot:
Composite repetition-aware data structures. CoRR abs/1502.05937 (2015) - [i56]Travis Gagie:
Approximating LZ77 in Small Space. CoRR abs/1503.02416 (2015) - [i55]Travis Gagie, Shunsuke Inenaga, Juha Kärkkäinen, Dominik Kempa, Marcin Piatkowski, Simon J. Puglisi, Shiho Sugimoto:
Diverse Palindromic Factorization is NP-Complete. CoRR abs/1503.04045 (2015) - [i54]Johannes Fischer, Travis Gagie, Pawel Gawrychowski, Tomasz Kociumaka:
Approximating LZ77 via Small-Space Multiple-Pattern Matching. CoRR abs/1504.06647 (2015) - [i53]Christina Boucher, Alexander Bowe, Travis Gagie, Giovanni Manzini, Jouni Sirén:
Relative Select. CoRR abs/1506.03262 (2015) - [i52]Travis Gagie, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Relative Compressed Suffix Trees. CoRR abs/1508.02550 (2015) - 2014
- [j21]Jérémy Barbay, Francisco Claude, Travis Gagie, Gonzalo Navarro, Yakov Nekrich:
Efficient Fully-Compressed Sequence Representations. Algorithmica 69(1): 232-268 (2014) - [j20]Arash Farzan, Travis Gagie, Gonzalo Navarro:
Entropy-bounded representation of point grids. Comput. Geom. 47(1): 1-14 (2014) - [j19]Gabriele Fici, Travis Gagie, Juha Kärkkäinen, Dominik Kempa:
A subquadratic algorithm for minimum palindromic factorization. J. Discrete Algorithms 28: 41-48 (2014) - [c40]Stephane Durocher, Robert Fraser, Travis Gagie, Debajyoti Mondal, Matthew Skala, Sharma V. Thankachan:
Indexed Geometric Jumbled Pattern Matching. CPM 2014: 110-119 - [c39]Travis Gagie, Simon J. Puglisi:
Relative Lempel-Ziv with Constant-Time Random Access. DCC 2014: 405 - [c38]Travis Gagie, Christopher Hoobin, Simon J. Puglisi:
Block Graphs in Practice. ICABD 2014: 30-36 - [c37]Travis Gagie, Giovanni Manzini, Daniel Valenzuela:
Compressed Spaced Suffix Arrays. ICABD 2014: 37-45 - [c36]Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Yakov Nekrich, Simon J. Puglisi:
LZ77-Based Self-indexing with Faster Pattern Matching. LATIN 2014: 731-742 - [c35]Héctor Ferrada, Travis Gagie, Simon Gog, Simon J. Puglisi:
Relative Lempel-Ziv with Constant-Time Random Access. SPIRE 2014: 13-17 - [c34]Djamal Belazzougui, Travis Gagie, Simon Gog, Giovanni Manzini, Jouni Sirén:
Relative FM-Indexes. SPIRE 2014: 52-64 - [i51]Gabriele Fici, Travis Gagie, Juha Kärkkäinen, Dominik Kempa:
A Subquadratic Algorithm for Minimum Palindromic Factorization. CoRR abs/1403.2431 (2014) - [i50]Travis Gagie, Giovanni Manzini, Jouni Sirén:
Reusing an FM-index. CoRR abs/1404.4814 (2014) - [i49]Travis Gagie:
Suffix Arrays for Spaced-SNP Databases. CoRR abs/1407.0114 (2014) - [i48]Travis Gagie, Aleksi Hartikainen, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Counting in Practice. CoRR abs/1409.6780 (2014) - [i47]Travis Gagie, Gonzalo Navarro, Yakov Nekrich, Alberto Ordóñez Pereira:
Efficient and Compact Representations of Prefix Codes. CoRR abs/1410.3438 (2014) - [i46]Christina Boucher, Alexander Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane:
Variable-Order de Bruijn Graphs. CoRR abs/1411.2718 (2014) - [i45]Travis Gagie, Javier I. González-Nova, Susana Ladra, Gonzalo Navarro, Diego Seco:
Faster Compressed Quadtrees. CoRR abs/1411.2785 (2014) - [i44]Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Queries on LZ-Bounded Encodings. CoRR abs/1412.0967 (2014) - [i43]Travis Gagie, Simon J. Puglisi:
Searching and Indexing Genomic Databases via Kernelization. CoRR abs/1412.1591 (2014) - 2013
- [j18]Pawel Gawrychowski, Travis Gagie:
Minimax trees in linear time with applications. Eur. J. Comb. 34(1): 82-90 (2013) - [j17]Travis Gagie, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi:
Colored range queries and document retrieval. Theor. Comput. Sci. 483: 36-50 (2013) - [c33]Travis Gagie:
On the Value of Multiple Read/Write Streams for Data Compression. Information Theory, Combinatorics, and Search Theory 2013: 284-297 - [c32]Travis Gagie, Pawel Gawrychowski, Yakov Nekrich:
Heaviest Induced Ancestors and Longest Common Substrings. CCCG 2013 - [c31]Travis Gagie, Wing-Kai Hon, Tsung-Han Ku:
New Algorithms for Position Heaps. CPM 2013: 95-106 - [c30]Travis Gagie, Kalle Karhu, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén:
Document Listing on Repetitive Collections. CPM 2013: 107-119 - [c29]Travis Gagie, Danny Hermelin, Gad M. Landau, Oren Weimann:
Binary Jumbled Pattern Matching on Trees and Tree-Like Structures. ESA 2013: 517-528 - [c28]Ferdinando Cicalese, Travis Gagie, Emanuele Giaquinta, Eduardo Sany Laber, Zsuzsanna Lipták, Romeo Rizzi, Alexandru I. Tomescu:
Indexes for Jumbled Pattern Matching in Strings, Trees and Graphs. SPIRE 2013: 56-63 - [c27]Djamal Belazzougui, Travis Gagie, Gonzalo Navarro:
Better Space Bounds for Parameterized Range Majority and Minority. WADS 2013: 121-132 - [i42]Travis Gagie, Danny Hermelin, Gad M. Landau, Oren Weimann:
Binary Jumbled Pattern Matching on Trees and Tree-Like Structures. CoRR abs/1301.6127 (2013) - [i41]Ferdinando Cicalese, Travis Gagie, Emanuele Giaquinta, Eduardo Sany Laber, Zsuzsanna Lipták, Romeo Rizzi, Alexandru I. Tomescu:
Indexes for Jumbled Pattern Matching in Strings, Trees and Graphs. CoRR abs/1304.5560 (2013) - [i40]Travis Gagie, Pawel Gawrychowski, Yakov Nekrich:
Heaviest Induced Ancestors and Longest Common Substrings. CoRR abs/1305.3164 (2013) - [i39]Héctor Ferrada, Travis Gagie, Tommi Hirvola, Simon J. Puglisi:
Hybrid Indexes for Repetitive Datasets. CoRR abs/1306.4037 (2013) - [i38]Héctor Ferrada, Travis Gagie, Tommi Hirvola, Simon J. Puglisi:
AliBI: An Alignment-Based Index for Genomic Datasets. CoRR abs/1307.6462 (2013) - [i37]Travis Gagie, Giovanni Manzini, Daniel Valenzuela:
Compressed Spaced Suffix Arrays. CoRR abs/1312.3422 (2013) - 2012
- [j16]Paolo Ferragina, Travis Gagie, Giovanni Manzini:
Lightweight Data Indexing and Compression in External Memory. Algorithmica 63(3): 707-730 (2012) - [j15]Travis Gagie:
A Note on Sequence Prediction over Large Alphabets. Algorithms 5(1): 50-55 (2012) - [j14]Hideo Bannai, Travis Gagie, Tomohiro I, Shunsuke Inenaga, Gad M. Landau, Moshe Lewenstein:
An efficient algorithm to test square-freeness of strings compressed by straight-line programs. Inf. Process. Lett. 112(19): 711-714 (2012) - [j13]Travis Gagie:
Bounds from a card trick. J. Discrete Algorithms 10: 2-4 (2012) - [j12]Travis Gagie, Gonzalo Navarro, Simon J. Puglisi:
New algorithms on wavelet trees and applications to information retrieval. Theor. Comput. Sci. 426: 25-41 (2012) - [c26]Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Yakov Nekrich, Simon J. Puglisi:
A Faster Grammar-Based Self-index. LATA 2012: 240-251 - [c25]Johannes Fischer, Travis Gagie, Tsvi Kopelowitz, Moshe Lewenstein, Veli Mäkinen, Leena Salmela, Niko Välimäki:
Forbidden Patterns. LATIN 2012: 327-337 - [c24]Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela, Jorma Tarhio:
Indexed Multi-pattern Matching. LATIN 2012: 399-407 - [i36]Travis Gagie, Pawel Gawrychowski:
Linear-Space Substring Range Counting over Polylogarithmic Alphabets. CoRR abs/1202.3208 (2012) - [i35]Travis Gagie:
On the Value of Multiple Read/Write Streams for Data Compression. CoRR abs/1204.1215 (2012) - [i34]Travis Gagie:
Sequential-Access FM-Indexes. CoRR abs/1205.1195 (2012) - [i33]Djamal Belazzougui, Travis Gagie, Gonzalo Navarro:
Better Space Bounds for Parameterized Range Majority and Minority. CoRR abs/1210.1765 (2012) - [i32]Travis Gagie:
Grammar-Based Construction of Indexes for Binary Jumbled Pattern Matching. CoRR abs/1210.8386 (2012) - [i31]Travis Gagie, Wing-Kai Hon, Tsung-Han Ku:
New Algorithms for Position Heaps. CoRR abs/1212.4613 (2012) - 2011
- [j11]Ferdinando Cicalese, Travis Gagie, Eduardo Sany Laber, Martin Milanic:
Competitive Boolean function evaluation: Beyond monotonicity, and the symmetric case. Discret. Appl. Math. 159(11): 1070-1078 (2011) - [j10]Travis Gagie, Yakov Nekrich:
Tight bounds for online stable sorting. J. Discrete Algorithms 9(2): 176-181 (2011) - [c23]Travis Gagie, Juha Kärkkäinen:
Counting Colours in Compressed Strings. CPM 2011: 197-207 - [c22]Travis Gagie, Pawel Gawrychowski, Simon J. Puglisi:
Faster Approximate Pattern Matching in Compressed Repetitive Texts. ISAAC 2011: 653-662 - [c21]Travis Gagie, Meng He, J. Ian Munro, Patrick K. Nicholson:
Finding Frequent Elements in Compressed 2D Arrays and Strings. SPIRE 2011: 295-300 - [i30]Travis Gagie, Pawel Gawrychowski, Simon J. Puglisi:
Faster Approximate Pattern Matching in Compressed Repetitive Texts. CoRR abs/1109.2930 (2011) - [i29]Travis Gagie, Pawel Gawrychowski:
A Faster LZ77-Based Index. CoRR abs/1109.3954 (2011) - [i28]Travis Gagie, Juha Kärkkäinen, Yakov Nekrich, Simon J. Puglisi:
A Compressed Self-Index for Genomic Databases. CoRR abs/1111.1355 (2011) - 2010
- [j9]Travis Gagie, Giovanni Manzini:
Move-to-Front, Distance Coding, and Inversion Frequencies revisited. Theor. Comput. Sci. 411(31-33): 2925-2944 (2010) - [c20]Ferdinando Cicalese, Travis Gagie, Anthony J. Macula, Martin Milanic, Eberhard Triesch:
A Better Bouncer's Algorithm. FUN 2010: 113-120 - [c19]Jérémy Barbay, Travis Gagie, Gonzalo Navarro, Yakov Nekrich:
Alphabet Partitioning for Compressed Rank/Select and Applications. ISAAC (2) 2010: 315-326 - [c18]Arash Farzan, Travis Gagie, Gonzalo Navarro:
Entropy-Bounded Representation of Point Grids. ISAAC (2) 2010: 327-338 - [c17]Travis Gagie, Pawel Gawrychowski:
Grammar-Based Compression in a Streaming Model. LATA 2010: 273-284 - [c16]Paolo Ferragina, Travis Gagie, Giovanni Manzini:
Lightweight Data Indexing and Compression in External Memory. LATIN 2010: 697-710 - [c15]Travis Gagie, Gonzalo Navarro, Yakov Nekrich:
Fast and Compact Prefix Codes. SOFSEM 2010: 419-427 - [c14]Travis Gagie, Gonzalo Navarro, Simon J. Puglisi:
Colored Range Queries and Document Retrieval. SPIRE 2010: 67-81 - [i27]Ferdinando Cicalese, Travis Gagie, Eduardo Sany Laber, Martin Milanic:
Competitive Boolean Function Evaluation: Beyond Monotonicity, and the Symmetric Case. CoRR abs/1006.4136 (2010) - [i26]Travis Gagie, Juha Kärkkäinen:
Counting Colours in Compressed Strings. CoRR abs/1011.3480 (2010) - [i25]Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela:
Pattern Kits. CoRR abs/1011.3491 (2010) - [i24]Travis Gagie, Gonzalo Navarro, Simon J. Puglisi:
New Algorithms on Wavelet Trees and Applications to Information Retrieval. CoRR abs/1011.4532 (2010) - [i23]Travis Gagie:
Bounds from a Card Trick. CoRR abs/1011.4609 (2010)
2000 – 2009
- 2009
- [b1]Travis Gagie:
New algorithms and lower bounds for sequential access data compression. Bielefeld University, 2009 - [j8]Travis Gagie:
A New Algorithm for Building Alphabetic Minimax Trees. Fundam. Informaticae 97(3): 321-329 (2009) - [j7]Travis Gagie:
Compressed depth sequences. Theor. Comput. Sci. 410(8-10): 958-962 (2009) - [c13]Travis Gagie:
On the Value of Multiple Read/Write Streams for Data Compression. CPM 2009: 68-77 - [c12]Travis Gagie, Marek Karpinski, Yakov Nekrich:
Low-Memory Adaptive Prefix Coding. DCC 2009: 13-22 - [c11]Pawel Gawrychowski, Travis Gagie:
Minimax Trees in Linear Time with Applications. IWOCA 2009: 278-288 - [c10]Travis Gagie, Simon J. Puglisi, Andrew Turpin:
Range Quantile Queries: Another Virtue of Wavelet Trees. SPIRE 2009: 1-6 - [c9]Travis Gagie, Yakov Nekrich:
Worst-Case Optimal Adaptive Prefix Coding. WADS 2009: 315-326 - [i22]Pawel Gawrychowski, Travis Gagie:
Minimax Trees in Linear Time with Applications. Search Methodologies 2009 - [i21]Travis Gagie:
New Algorithms and Lower Bounds for Sequential-Access Data Compression. CoRR abs/0902.0133 (2009) - [i20]Travis Gagie:
Another Virtue of Wavelet Trees. CoRR abs/0903.4726 (2009) - [i19]Travis Gagie, Gonzalo Navarro, Yakov Nekrich:
Fast and Compact Prefix Codes. CoRR abs/0905.3107 (2009) - [i18]Travis Gagie, Yakov Nekrich:
Tight Bounds for Online Stable Sorting. CoRR abs/0907.0741 (2009) - [i17]Paolo Ferragina, Travis Gagie, Giovanni Manzini:
Lightweight Data Indexing and Compression in External Memory. CoRR abs/0909.4341 (2009) - [i16]Jérémy Barbay, Travis Gagie, Gonzalo Navarro, Yakov Nekrich:
Alphabet Partitioning for Compressed Rank/Select with Applications. CoRR abs/0911.4981 (2009) - [i15]Travis Gagie:
Grammar-Based Compression in a Streaming Model. CoRR abs/0912.0850 (2009) - [i14]Travis Gagie:
A Lower Bound on the Complexity of Approximating the Entropy of a Markov Source. CoRR abs/0912.5079 (2009) - 2008
- [j6]Travis Gagie:
Dynamic asymmetric communication. Inf. Process. Lett. 108(6): 352-355 (2008) - [j5]Travis Gagie:
Sorting streamed multisets. Inf. Process. Lett. 108(6): 418-421 (2008) - [r1]Travis Gagie, Giovanni Manzini:
Dictionary-Based Data Compression. Encyclopedia of Algorithms 2008 - [i13]Travis Gagie:
A New Algorithm for Building Alphabetic Minimax Trees. CoRR abs/0810.5064 (2008) - [i12]Travis Gagie, Marek Karpinski, Yakov Nekrich:
Low-Memory Adaptive Prefix Coding. CoRR abs/0811.3602 (2008) - [i11]Pawel Gawrychowski, Travis Gagie:
Minimax Trees in Linear Time. CoRR abs/0812.2868 (2008) - [i10]Travis Gagie, Yakov Nekrich:
Worst-Case Optimal Adaptive Prefix Coding. CoRR abs/0812.3306 (2008) - 2007
- [j4]Travis Gagie:
Dynamic Shannon coding. Inf. Process. Lett. 102(2-3): 113-117 (2007) - [c8]Travis Gagie, Giovanni Manzini:
Move-to-Front, Distance Coding, and Inversion Frequencies Revisited. CPM 2007: 71-82 - [c7]Travis Gagie:
Sorting streamed multisets. ICTCS 2007: 130-138 - [c6]Travis Gagie, Giovanni Manzini:
Space-Conscious Compression. MFCS 2007: 206-217 - [i9]Travis Gagie:
A nearly tight memory-redundancy trade-off for one-pass compression. CoRR abs/0708.1877 (2007) - [i8]Travis Gagie:
Empirical entropy in context. CoRR abs/0708.2084 (2007) - [i7]Travis Gagie:
Bounds for Compression in Streaming Models. CoRR abs/0711.3338 (2007) - 2006
- [j3]Travis Gagie:
Compressing probability distributions. Inf. Process. Lett. 97(4): 133-137 (2006) - [j2]Travis Gagie:
Large alphabets and incompressibility. Inf. Process. Lett. 99(6): 246-251 (2006) - [c5]Travis Gagie:
Dynamic Asymmetric Communication. DCC 2006: 447 - [c4]Travis Gagie:
Dynamic Asymmetric Communication. SIROCCO 2006: 310-318 - [i6]Travis Gagie:
On the space complexity of one-pass compression. CoRR abs/cs/0611099 (2006) - 2005
- [j1]Travis Gagie:
Restructuring binary search trees revisited. Inf. Process. Lett. 95(3): 418-421 (2005) - [i5]Travis Gagie:
Dynamic Shannon Coding. CoRR abs/cs/0503085 (2005) - [i4]Travis Gagie:
Compressing Probability Distributions. CoRR abs/cs/0506016 (2005) - [i3]Travis Gagie:
Dynamic Asymmetric Communication. CoRR abs/cs/0506025 (2005) - [i2]Travis Gagie:
Sorting a Low-Entropy Sequence. CoRR abs/cs/0506027 (2005) - [i1]Travis Gagie:
Large Alphabets and Incompressibility. CoRR abs/cs/0506056 (2005) - 2004
- [c3]Travis Gagie:
Dynamic Shannon Coding. Data Compression Conference 2004: 540 - [c2]Travis Gagie:
Dynamic Shannon Coding. ESA 2004: 359-370 - 2003
- [c1]Travis Gagie:
New Ways to Construct Binary Search Trees. ISAAC 2003: 537-543
Coauthor Index
[c103] [i126] [i123] [c99] [i120] [i113] [j60] [j57] [i111] [i108] [c84] [c81] [c80] [c79] [j47] [j46] [c77] [i95] [i94] [j43] [j42] [c74] [c73] [i92] [i91] [i90] [i88] [c64] [i84] [i77] [j29] [j26] [c60] [c58] [c52] [r3] [i66] [i61] [c41] [i53] [c37] [c34] [i50] [i37] [j16] [j9] [c16] [i17] [r1] [c8] [c6]
[j69] [c110] [c107] [c106] [c103] [i126] [i123] [i122] [j65] [c93] [i115] [i114] [j60] [j59] [j58] [j57] [i111] [i102] [j56] [j55] [j54] [c84] [c82] [c81] [i100] [j52] [j50] [j49] [j48] [j44] [c77] [i95] [i94] [j40] [c76] [c75] [c73] [c72] [r4] [i93] [i92] [i90] [i89] [i88] [j39] [j37] [c70] [c69] [c68] [c67] [c65] [e1] [i85] [i83] [i82] [i81] [i80] [i79] [i78] [j32] [c62] [c59] [c56] [c55] [i75] [i72] [i71] [i70] [c52] [i66] [i65] [i64] [i62] [i59] [j22] [c46] [c45] [i52] [j21] [j20] [i48] [i47] [i45] [j17] [c30] [c27] [j12] [i33] [c19] [c18] [c15] [c14] [i24] [i19] [i16]
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